ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23d15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3145 Score = 620 bits (313), Expect = e-174 Identities = 532/605 (87%) Strand = Plus / Plus Query: 45 tcatatgatgaaggttcccagacattctctttgaaattaagtcaagaagtgccacctacc 104 ||||| |||| | |||| |||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 1611 tcatacgatgcaagttctcagacattttctctgaaatttagtcaagaagtgccacctacc 1670 Query: 105 cctggccaaccgatgaaagagccaatgttcatacctgttgctgttggacttgttgattct 164 ||||||||||| | |||||||| |||||||| ||| ||||||| ||||||||||||||| Sbjct: 1671 cctggccaaccagttaaagagccgatgttcattcctattgctgtcggacttgttgattct 1730 Query: 165 accggagaagatatgcccctgacttccatctacagtgatgggatggtccaaacactctct 224 |||||| | ||||||||||| |||||||| ||||||||||||||| ||||| ||||| || Sbjct: 1731 accggaaaggatatgcccctaacttccatttacagtgatgggatgctccaatcactcact 1790 Query: 225 aatgatggtcatccagtcttcaccacagtgcttcagtttaagaagacggaggaagagttt 284 | |||||| || ||||||||||| || || ||||| ||||| |||| ||||||||| || Sbjct: 1791 agtgatggccagccagtcttcactactgttcttcaatttaataagaaggaggaagaattc 1850 Query: 285 atatttaataatgtacctgagagaccggttccttccttgttgaggggatacagtgctccc 344 |||||||| || ||||||||| ||| || ||||||||||||||||||||||||||||| Sbjct: 1851 atatttaacaacatacctgagaaaccagtgccttccttgttgaggggatacagtgctcct 1910 Query: 345 atccgtcttgattctgatctgactgagagtgacttgtatttcttacttgccaatgattca 404 | |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 1911 gttcgtcttgattctgatctgactgagagtgacttgtttttcctacttgccaatgattcg 1970 Query: 405 gatgaatttaacagatgggaagcaggtcaaatattggcacgcaaattgatgttcagtctt 464 |||||||||||||| |||||||| ||||| | || |||| ||| ||||| |||||||| Sbjct: 1971 gatgaatttaacaggtgggaagctggtcaggtgctgtcacgtaaactgatgctcagtctt 2030 Query: 465 gtggctgacttccaacaacagaaaacactggcgctaaatacaaaatttgttgatggactt 524 || ||||||||||| ||||||||||||||||| || || | |||||||||||||||||| Sbjct: 2031 gtagctgacttccagcaacagaaaacactggccctgaaccctaaatttgttgatggactt 2090 Query: 525 agagcaatcctgcgaagcacaagcttggataaagaattcattgcaaaagcaataactctg 584 ||| |||||||||| | ||||||||||||||||||||||||||| ||||| |||||| || Sbjct: 2091 agatcaatcctgcggaacacaagcttggataaagaattcattgcgaaagcgataactttg 2150 Query: 585 cctggtcaaggcgagattatggacatgatgtcaattgcagatcccgatgcagttcatgct 644 || |||||||| ||||||||||| |||||| || |||||||||| ||||||||||||||| Sbjct: 2151 ccgggtcaaggggagattatggatatgatgccagttgcagatcctgatgcagttcatgct 2210 Query: 645 gtccg 649 ||||| Sbjct: 2211 gtccg 2215
>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full insert sequence Length = 3181 Score = 620 bits (313), Expect = e-174 Identities = 532/605 (87%) Strand = Plus / Plus Query: 45 tcatatgatgaaggttcccagacattctctttgaaattaagtcaagaagtgccacctacc 104 ||||| |||| | |||| |||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 1647 tcatacgatgcaagttctcagacattttctctgaaatttagtcaagaagtgccacctacc 1706 Query: 105 cctggccaaccgatgaaagagccaatgttcatacctgttgctgttggacttgttgattct 164 ||||||||||| | |||||||| |||||||| ||| ||||||| ||||||||||||||| Sbjct: 1707 cctggccaaccagttaaagagccgatgttcattcctattgctgtcggacttgttgattct 1766 Query: 165 accggagaagatatgcccctgacttccatctacagtgatgggatggtccaaacactctct 224 |||||| | ||||||||||| |||||||| ||||||||||||||| ||||| ||||| || Sbjct: 1767 accggaaaggatatgcccctaacttccatttacagtgatgggatgctccaatcactcact 1826 Query: 225 aatgatggtcatccagtcttcaccacagtgcttcagtttaagaagacggaggaagagttt 284 | |||||| || ||||||||||| || || ||||| ||||| |||| ||||||||| || Sbjct: 1827 agtgatggccagccagtcttcactactgttcttcaatttaataagaaggaggaagaattc 1886 Query: 285 atatttaataatgtacctgagagaccggttccttccttgttgaggggatacagtgctccc 344 |||||||| || ||||||||| ||| || ||||||||||||||||||||||||||||| Sbjct: 1887 atatttaacaacatacctgagaaaccagtgccttccttgttgaggggatacagtgctcct 1946 Query: 345 atccgtcttgattctgatctgactgagagtgacttgtatttcttacttgccaatgattca 404 | |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 1947 gttcgtcttgattctgatctgactgagagtgacttgtttttcctacttgccaatgattcg 2006 Query: 405 gatgaatttaacagatgggaagcaggtcaaatattggcacgcaaattgatgttcagtctt 464 |||||||||||||| |||||||| ||||| | || |||| ||| ||||| |||||||| Sbjct: 2007 gatgaatttaacaggtgggaagctggtcaggtgctgtcacgtaaactgatgctcagtctt 2066 Query: 465 gtggctgacttccaacaacagaaaacactggcgctaaatacaaaatttgttgatggactt 524 || ||||||||||| ||||||||||||||||| || || | |||||||||||||||||| Sbjct: 2067 gtagctgacttccagcaacagaaaacactggccctgaaccctaaatttgttgatggactt 2126 Query: 525 agagcaatcctgcgaagcacaagcttggataaagaattcattgcaaaagcaataactctg 584 ||| |||||||||| | ||||||||||||||||||||||||||| ||||| |||||| || Sbjct: 2127 agatcaatcctgcggaacacaagcttggataaagaattcattgcgaaagcgataactttg 2186 Query: 585 cctggtcaaggcgagattatggacatgatgtcaattgcagatcccgatgcagttcatgct 644 || |||||||| ||||||||||| |||||| || |||||||||| ||||||||||||||| Sbjct: 2187 ccgggtcaaggggagattatggatatgatgccagttgcagatcctgatgcagttcatgct 2246 Query: 645 gtccg 649 ||||| Sbjct: 2247 gtccg 2251
>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full insert sequence Length = 2519 Score = 613 bits (309), Expect = e-172 Identities = 531/605 (87%) Strand = Plus / Plus Query: 45 tcatatgatgaaggttcccagacattctctttgaaattaagtcaagaagtgccacctacc 104 ||||| |||| | |||| |||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 1029 tcatacgatgcaagttctcagacattttctctgaaatttagtcaagaagtgccacctacc 1088 Query: 105 cctggccaaccgatgaaagagccaatgttcatacctgttgctgttggacttgttgattct 164 ||||||||||| | |||||||| |||||||| ||| ||||||| ||||||||||||||| Sbjct: 1089 cctggccaaccagttaaagagccgatgttcattcctattgctgtcggacttgttgattct 1148 Query: 165 accggagaagatatgcccctgacttccatctacagtgatgggatggtccaaacactctct 224 |||||| | ||||||||||| |||||||| ||||||||||||||| ||||| ||||| || Sbjct: 1149 accggaaaggatatgcccctaacttccatttacagtgatgggatgctccaatcactcact 1208 Query: 225 aatgatggtcatccagtcttcaccacagtgcttcagtttaagaagacggaggaagagttt 284 | |||||| || ||||||||||| || || ||||| ||||| |||| ||||||||| || Sbjct: 1209 agtgatggccagccagtcttcactactgttcttcaatttaataagaaggaggaagaattc 1268 Query: 285 atatttaataatgtacctgagagaccggttccttccttgttgaggggatacagtgctccc 344 |||||||| || ||||||||| ||| || ||||||||||||||||||||||||||||| Sbjct: 1269 atatttaacaacatacctgagaaaccagtgccttccttgttgaggggatacagtgctcct 1328 Query: 345 atccgtcttgattctgatctgactgagagtgacttgtatttcttacttgccaatgattca 404 | |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 1329 gttcgtcttgattctgatctgactgagagtgacttgtttttcctacttgccaatgattcg 1388 Query: 405 gatgaatttaacagatgggaagcaggtcaaatattggcacgcaaattgatgttcagtctt 464 |||||||||||||| |||||||| ||||| | || |||| ||| ||||| |||||||| Sbjct: 1389 gatgaatttaacaggtgggaagctggtcaggtgctgtcacgtaaactgatgctcagtctt 1448 Query: 465 gtggctgacttccaacaacagaaaacactggcgctaaatacaaaatttgttgatggactt 524 || ||||||||||| ||||||||||||||||| || || | |||||||||||||||||| Sbjct: 1449 gtagctgacttccagcaacagaaaacactggccctgaaccctaaatttgttgatggactt 1508 Query: 525 agagcaatcctgcgaagcacaagcttggataaagaattcattgcaaaagcaataactctg 584 ||| |||||||||| | ||||||||||||||||||||||||||| ||||| |||||| || Sbjct: 1509 agatcaatcctgcggaacacaagcttggataaagaattcattgcgaaagcgataactttg 1568 Query: 585 cctggtcaaggcgagattatggacatgatgtcaattgcagatcccgatgcagttcatgct 644 | |||||||| ||||||||||| |||||| || |||||||||| ||||||||||||||| Sbjct: 1569 cagggtcaaggggagattatggatatgatgccagttgcagatcctgatgcagttcatgct 1628 Query: 645 gtccg 649 ||||| Sbjct: 1629 gtccg 1633
>gb|AY105426.1| Zea mays PCO146438 mRNA sequence Length = 3165 Score = 507 bits (256), Expect = e-140 Identities = 508/592 (85%) Strand = Plus / Plus Query: 58 gttcccagacattctctttgaaattaagtcaagaagtgccacctacccctggccaaccga 117 |||| |||||||||||||||||| | || |||||||| ||||| || |||||||| ||| Sbjct: 1733 gttctcagacattctctttgaaacttagccaagaagtaccacccactcctggccagccgg 1792 Query: 118 tgaaagagccaatgttcatacctgttgctgttggacttgttgattctaccggagaagata 177 | || ||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct: 1793 ttaaggagcctatgttcatacctgttgctgttggacttgttgactctactggaaaagata 1852 Query: 178 tgcccctgacttccatctacagtgatgggatggtccaaacactctctaatgatggtcatc 237 ||||||| |||||| | ||||||||||| | |||||||| |||||| |||||| || | Sbjct: 1853 tgcccctcacttccgtttacagtgatggaagtctccaaacagtctctactgatggccagc 1912 Query: 238 cagtcttcaccacagtgcttcagtttaagaagacggaggaagagtttatatttaataatg 297 |||||||||| || |||||||||||||| |||| || ||||||||||| ||||| || Sbjct: 1913 cagtcttcactactgtgcttcagtttaaaaagaaagaagaagagtttatgtttaaaaaca 1972 Query: 298 tacctgagagaccggttccttccttgttgaggggatacagtgctcccatccgtcttgatt 357 | |||||||| || |||||||| ||||| |||||||| |||||||| ||||||| |||| Sbjct: 1973 ttcctgagaggccagttccttctttgttaaggggatatagtgctcctgtccgtctagatt 2032 Query: 358 ctgatctgactgagagtgacttgtatttcttacttgccaatgattcagatgaatttaaca 417 ||||||||| |||| ||||| | | |||||| ||||||| ||| || ||||||||||||| Sbjct: 2033 ctgatctgagtgagggtgacctatttttcttgcttgccagtgactcggatgaatttaaca 2092 Query: 418 gatgggaagcaggtcaaatattggcacgcaaattgatgttcagtcttgtggctgacttcc 477 |||||||||| || ||| | |||||||| || |||||| ||||||| || ||||| |||| Sbjct: 2093 gatgggaagctggccaagttttggcacgtaagttgatgctcagtctcgtagctgatttcc 2152 Query: 478 aacaacagaaaacactggcgctaaatacaaaatttgttgatggacttagagcaatcctgc 537 | |||||||||||||||| |||||| | |||||||||||||| ||||| |||| |||| Sbjct: 2153 agcaacagaaaacactggttctaaatccgaaatttgttgatgggattagatcaattctgc 2212 Query: 538 gaagcacaagcttggataaagaattcattgcaaaagcaataactctgcctggtcaaggcg 597 | | ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| | Sbjct: 2213 gcaacacaagcttggataaggaattcattgcgaaagcaataactttgcctggtcaagggg 2272 Query: 598 agattatggacatgatgtcaattgcagatcccgatgcagttcatgctgtccg 649 |||||||||| |||||| | |||||||||| |||||||||||||||||||| Sbjct: 2273 agattatggatatgatggaagttgcagatcctgatgcagttcatgctgtccg 2324
>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence Length = 2068 Score = 460 bits (232), Expect = e-126 Identities = 503/592 (84%), Gaps = 1/592 (0%) Strand = Plus / Plus Query: 58 gttcccagacattctctttgaaattaagtcaagaagtgccacctacccctggccaaccga 117 |||| |||||||||||||||||| | || |||||||| ||||| || |||||||| ||| Sbjct: 608 gttctcagacattctctttgaaacttagccaagaagtaccacccactcctggccagccgg 667 Query: 118 tgaaagagccaatgttcatacctgttgctgttggacttgttgattctaccggagaagata 177 | || ||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct: 668 ttaaggagcctatgttcatacctgttgctgttggacttgttgactctactggaaaagata 727 Query: 178 tgcccctgacttccatctacagtgatgggatggtccaaacactctctaatgatggtcatc 237 ||||||| |||||| | ||||||||||| | ||||| || |||||| |||||| || | Sbjct: 728 tgcccctcacttccgtttacagtgatggaagtctccaa-cagtctctactgatggccagc 786 Query: 238 cagtcttcaccacagtgcttcagtttaagaagacggaggaagagtttatatttaataatg 297 |||||||||| || |||||||||| |||| || ||||||||||| ||||| || Sbjct: 787 cagtcttcactacccgttttcagtttaaaaagaaagaagaagagtttatgtttaaaaaca 846 Query: 298 tacctgagagaccggttccttccttgttgaggggatacagtgctcccatccgtcttgatt 357 | |||||||| || |||||||| ||||| |||||||| |||||||| ||||||| |||| Sbjct: 847 ttcctgagaggccagttccttctttgttaaggggatatagtgctcctgtccgtctagatt 906 Query: 358 ctgatctgactgagagtgacttgtatttcttacttgccaatgattcagatgaatttaaca 417 ||||||||| |||| ||||| | | |||||| ||||||| ||| || ||||||||||||| Sbjct: 907 ctgatctgagtgagggtgacctatttttcttgcttgccagtgactcggatgaatttaaca 966 Query: 418 gatgggaagcaggtcaaatattggcacgcaaattgatgttcagtcttgtggctgacttcc 477 |||||||||| || ||| | |||||||| || |||||| ||||||| || ||||| |||| Sbjct: 967 gatgggaagctggccaagttttggcacgtaagttgatgctcagtctcgtagctgatttcc 1026 Query: 478 aacaacagaaaacactggcgctaaatacaaaatttgttgatggacttagagcaatcctgc 537 | |||||||||||||||| |||||| | |||||||||||||| ||||| |||| |||| Sbjct: 1027 agcaacagaaaacactggttctaaatccgaaatttgttgatgggattagatcaattctgc 1086 Query: 538 gaagcacaagcttggataaagaattcattgcaaaagcaataactctgcctggtcaaggcg 597 | | ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| | Sbjct: 1087 gcaacacaagcttggataaggaattcattgcgaaagcaataactttgcctggtcaagggg 1146 Query: 598 agattatggacatgatgtcaattgcagatcccgatgcagttcatgctgtccg 649 |||||||||| |||||| | |||||||||| |||||||||||||||||||| Sbjct: 1147 agattatggatatgatggaagttgcagatcctgatgcagttcatgctgtccg 1198
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 194 bits (98), Expect = 3e-46 Identities = 161/182 (88%) Strand = Plus / Minus Query: 84 agtcaagaagtgccacctacccctggccaaccgatgaaagagccaatgttcatacctgtt 143 |||||||||||||||||||||||||||||||| | |||||||| |||||||| ||| || Sbjct: 28168743 agtcaagaagtgccacctacccctggccaaccagttaaagagccgatgttcattcctatt 28168684 Query: 144 gctgttggacttgttgattctaccggagaagatatgcccctgacttccatctacagtgat 203 ||||| ||||||||||||||||||||| | ||||||||||| |||||||| ||||||||| Sbjct: 28168683 gctgtcggacttgttgattctaccggaaaggatatgcccctaacttccatttacagtgat 28168624 Query: 204 gggatggtccaaacactctctaatgatggtcatccagtcttcaccacagtgcttcagttt 263 |||||| ||||| ||||| ||| |||||| || ||||||||||| || || ||||| ||| Sbjct: 28168623 gggatgctccaatcactcactagtgatggccagccagtcttcactactgttcttcaattt 28168564 Query: 264 aa 265 || Sbjct: 28168563 aa 28168562 Score = 180 bits (91), Expect = 4e-42 Identities = 133/147 (90%) Strand = Plus / Minus Query: 272 ggaggaagagtttatatttaataatgtacctgagagaccggttccttccttgttgagggg 331 ||||||||| || |||||||| || ||||||||| ||| || ||||||||||||||||| Sbjct: 28168250 ggaggaagaattcatatttaacaacatacctgagaaaccagtgccttccttgttgagggg 28168191 Query: 332 atacagtgctcccatccgtcttgattctgatctgactgagagtgacttgtatttcttact 391 |||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||| Sbjct: 28168190 atacagtgctcctgttcgtcttgattctgatctgactgagagtgacttgtttttcctact 28168131 Query: 392 tgccaatgattcagatgaatttaacag 418 |||||||||||| |||||||||||||| Sbjct: 28168130 tgccaatgattcggatgaatttaacag 28168104 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 442 cacgcaaattgatgttcagtcttgtggctgacttccaacaacagaaaacactggcgctaa 501 |||| ||| ||||| |||||||||| ||||||||||| ||||||||||||||||| || | Sbjct: 28168002 cacgtaaactgatgctcagtcttgtagctgacttccagcaacagaaaacactggccctga 28167943 Query: 502 atacaaaatttgttgatggacttagagcaatcctgcgaagcacaagcttggataaag 558 | | ||||||||||||||||||||| |||||||||| | ||||||||||||||||| Sbjct: 28167942 accctaaatttgttgatggacttagatcaatcctgcggaacacaagcttggataaag 28167886 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Minus Query: 558 gaattcattgcaaaagcaataactctgcctggtcaaggcgagattatggacatgatgtca 617 ||||||||||| ||||| |||||| |||| |||||||| ||||||||||| |||||| || Sbjct: 28167808 gaattcattgcgaaagcgataactttgccgggtcaaggggagattatggatatgatgcca 28167749 Query: 618 attgcagatcccgatgcagttcatgctgtccg 649 |||||||||| |||||||||||||||||||| Sbjct: 28167748 gttgcagatcctgatgcagttcatgctgtccg 28167717
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 194 bits (98), Expect = 3e-46 Identities = 161/182 (88%) Strand = Plus / Minus Query: 84 agtcaagaagtgccacctacccctggccaaccgatgaaagagccaatgttcatacctgtt 143 |||||||||||||||||||||||||||||||| | |||||||| |||||||| ||| || Sbjct: 52216 agtcaagaagtgccacctacccctggccaaccagttaaagagccgatgttcattcctatt 52157 Query: 144 gctgttggacttgttgattctaccggagaagatatgcccctgacttccatctacagtgat 203 ||||| ||||||||||||||||||||| | ||||||||||| |||||||| ||||||||| Sbjct: 52156 gctgtcggacttgttgattctaccggaaaggatatgcccctaacttccatttacagtgat 52097 Query: 204 gggatggtccaaacactctctaatgatggtcatccagtcttcaccacagtgcttcagttt 263 |||||| ||||| ||||| ||| |||||| || ||||||||||| || || ||||| ||| Sbjct: 52096 gggatgctccaatcactcactagtgatggccagccagtcttcactactgttcttcaattt 52037 Query: 264 aa 265 || Sbjct: 52036 aa 52035 Score = 180 bits (91), Expect = 4e-42 Identities = 133/147 (90%) Strand = Plus / Minus Query: 272 ggaggaagagtttatatttaataatgtacctgagagaccggttccttccttgttgagggg 331 ||||||||| || |||||||| || ||||||||| ||| || ||||||||||||||||| Sbjct: 51723 ggaggaagaattcatatttaacaacatacctgagaaaccagtgccttccttgttgagggg 51664 Query: 332 atacagtgctcccatccgtcttgattctgatctgactgagagtgacttgtatttcttact 391 |||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||| Sbjct: 51663 atacagtgctcctgttcgtcttgattctgatctgactgagagtgacttgtttttcctact 51604 Query: 392 tgccaatgattcagatgaatttaacag 418 |||||||||||| |||||||||||||| Sbjct: 51603 tgccaatgattcggatgaatttaacag 51577 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 442 cacgcaaattgatgttcagtcttgtggctgacttccaacaacagaaaacactggcgctaa 501 |||| ||| ||||| |||||||||| ||||||||||| ||||||||||||||||| || | Sbjct: 51475 cacgtaaactgatgctcagtcttgtagctgacttccagcaacagaaaacactggccctga 51416 Query: 502 atacaaaatttgttgatggacttagagcaatcctgcgaagcacaagcttggataaag 558 | | ||||||||||||||||||||| |||||||||| | ||||||||||||||||| Sbjct: 51415 accctaaatttgttgatggacttagatcaatcctgcggaacacaagcttggataaag 51359 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Minus Query: 558 gaattcattgcaaaagcaataactctgcctggtcaaggcgagattatggacatgatgtca 617 ||||||||||| ||||| |||||| |||| |||||||| ||||||||||| |||||| || Sbjct: 51281 gaattcattgcgaaagcgataactttgccgggtcaaggggagattatggatatgatgcca 51222 Query: 618 attgcagatcccgatgcagttcatgctgtccg 649 |||||||||| |||||||||||||||||||| Sbjct: 51221 gttgcagatcctgatgcagttcatgctgtccg 51190
>emb|AJ234438.1|HVU234438 Hordeum vulgare partial mRNA; clone cMWG0721 Length = 376 Score = 174 bits (88), Expect = 2e-40 Identities = 88/88 (100%) Strand = Plus / Minus Query: 564 attgcaaaagcaataactctgcctggtcaaggcgagattatggacatgatgtcaattgca 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 attgcaaaagcaataactctgcctggtcaaggcgagattatggacatgatgtcaattgca 317 Query: 624 gatcccgatgcagttcatgctgtccgga 651 |||||||||||||||||||||||||||| Sbjct: 316 gatcccgatgcagttcatgctgtccgga 289
>ref|NM_202354.1| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.2 mRNA, complete cds Length = 3331 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 544 caagcttggataaagaattcattgcaaaagcaataactctgcctggtcaaggcgagatta 603 |||||||||| || ||||| || || ||||||||||| || ||||| | || ||||| | Sbjct: 2141 caagcttggacaaggaatttatagccaaagcaataacactacctggggagggagagataa 2200 Query: 604 tggacatgatgtcaattgcagatcccgatgcagttcatgctgt 646 ||||||||||| | | || ||||| ||||| ||||||||||| Sbjct: 2201 tggacatgatggccgtggcggatcctgatgctgttcatgctgt 2243
>ref|NM_105053.3| Arabidopsis thaliana membrane alanyl aminopeptidase AT1G63770 transcript variant AT1G63770.1 mRNA, complete cds Length = 3229 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 544 caagcttggataaagaattcattgcaaaagcaataactctgcctggtcaaggcgagatta 603 |||||||||| || ||||| || || ||||||||||| || ||||| | || ||||| | Sbjct: 2141 caagcttggacaaggaatttatagccaaagcaataacactacctggggagggagagataa 2200 Query: 604 tggacatgatgtcaattgcagatcccgatgcagttcatgctgt 646 ||||||||||| | | || ||||| ||||| ||||||||||| Sbjct: 2201 tggacatgatggccgtggcggatcctgatgctgttcatgctgt 2243
>gb|BT010361.1| Arabidopsis thaliana At1g63770 mRNA, complete cds Length = 2652 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 544 caagcttggataaagaattcattgcaaaagcaataactctgcctggtcaaggcgagatta 603 |||||||||| || ||||| || || ||||||||||| || ||||| | || ||||| | Sbjct: 1853 caagcttggacaaggaatttatagccaaagcaataacactacctggggagggagagataa 1912 Query: 604 tggacatgatgtcaattgcagatcccgatgcagttcatgctgt 646 ||||||||||| | | || ||||| ||||| ||||||||||| Sbjct: 1913 tggacatgatggccgtggcggatcctgatgctgttcatgctgt 1955
>gb|AY960336.1| Arabidopsis thaliana M1 aminopeptidase mRNA, complete cds, alternatively spliced Length = 3051 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 544 caagcttggataaagaattcattgcaaaagcaataactctgcctggtcaaggcgagatta 603 |||||||||| || ||||| || || ||||||||||| || ||||| | || ||||| | Sbjct: 2081 caagcttggacaaggaatttatagccaaagcaataacactacctggggagggagagataa 2140 Query: 604 tggacatgatgtcaattgcagatcccgatgcagttcatgctgt 646 ||||||||||| | | || ||||| ||||| ||||||||||| Sbjct: 2141 tggacatgatggccgtggcggatcctgatgctgttcatgctgt 2183
>gb|BT002074.1| Arabidopsis thaliana putative aminopeptidase (At1g63770) mRNA, complete cds Length = 3056 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 544 caagcttggataaagaattcattgcaaaagcaataactctgcctggtcaaggcgagatta 603 |||||||||| || ||||| || || ||||||||||| || ||||| | || ||||| | Sbjct: 2083 caagcttggacaaggaatttatagccaaagcaataacactacctggggagggagagataa 2142 Query: 604 tggacatgatgtcaattgcagatcccgatgcagttcatgctgt 646 ||||||||||| | | || ||||| ||||| ||||||||||| Sbjct: 2143 tggacatgatggccgtggcggatcctgatgctgttcatgctgt 2185
>gb|AC133182.3| Mus musculus BAC clone RP24-181H19 from chromosome 18, complete sequence Length = 163378 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 ttcttacttgccaatgattcag 405 |||||||||||||||||||||| Sbjct: 37535 ttcttacttgccaatgattcag 37514
>gb|AC111031.8| Mus musculus chromosome 18, clone RP23-447L21, complete sequence Length = 177570 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 384 ttcttacttgccaatgattcag 405 |||||||||||||||||||||| Sbjct: 65993 ttcttacttgccaatgattcag 66014
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 594 ggcgagattatggacatgatg 614 ||||||||||||||||||||| Sbjct: 4772165 ggcgagattatggacatgatg 4772185
>gb|AC146001.2| Pan troglodytes BAC clone RP43-148A6 from 7, complete sequence Length = 154218 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 ggaggaagagtttatatttaa 292 ||||||||||||||||||||| Sbjct: 48570 ggaggaagagtttatatttaa 48590
>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete sequence Length = 87575 Score = 42.1 bits (21), Expect = 2.2 Identities = 63/77 (81%) Strand = Plus / Plus Query: 570 aaagcaataactctgcctggtcaaggcgagattatggacatgatgtcaattgcagatccc 629 ||||||||||| || ||||| | || ||||| |||||||||||| | | || ||||| Sbjct: 9547 aaagcaataacactacctggggagggagagataatggacatgatggccgtggcggatcct 9606 Query: 630 gatgcagttcatgctgt 646 ||||| ||||||||||| Sbjct: 9607 gatgctgttcatgctgt 9623
>emb|AL163872.2|CNS05TBN Human chromosome 14 DNA sequence BAC R-76E12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168486 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 180 cccctgacttccatctacagtgatg 204 ||||||||||||||||| ||||||| Sbjct: 78935 cccctgacttccatctaaagtgatg 78911
>dbj|AK116555.1| Ciona intestinalis cDNA, clone:citb040n19, full insert sequence Length = 1843 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 124 agccaatgttcatacctgttgctgttgga 152 |||||||| ||||||||||||||| |||| Sbjct: 601 agccaatggtcatacctgttgctgatgga 629
>emb|AL355098.3|CNS05TCH Human chromosome 14 DNA sequence BAC R-241E13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 153094 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 180 cccctgacttccatctacagtgatg 204 ||||||||||||||||| ||||||| Sbjct: 143820 cccctgacttccatctaaagtgatg 143796
>ref|XM_515882.1| PREDICTED: Pan troglodytes low density lipoprotein-related protein 2 (LOC459713), mRNA Length = 16471 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 ttcttacttgccaatgattc 403 |||||||||||||||||||| Sbjct: 5353 ttcttacttgccaatgattc 5372
>ref|XM_368118.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01126.4) partial mRNA Length = 4215 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ttaagaagacggaggaagag 281 |||||||||||||||||||| Sbjct: 2822 ttaagaagacggaggaagag 2841
>gb|AC134611.4| Mus musculus BAC clone RP23-98D8 from chromosome 15, complete sequence Length = 198894 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ccctgacttccatctacagt 200 |||||||||||||||||||| Sbjct: 165677 ccctgacttccatctacagt 165696
>gb|AC122058.4| Mus musculus BAC clone RP24-468G7 from chromosome 14, complete sequence Length = 143331 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gaagagtttatatttaataa 295 |||||||||||||||||||| Sbjct: 43562 gaagagtttatatttaataa 43543
>gb|AY286492.1| Danio rerio prickle1 mRNA, complete cds Length = 2698 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cttgtatttcttacttgcca 396 |||||||||||||||||||| Sbjct: 1564 cttgtatttcttacttgcca 1545
>emb|AL353616.14| Human DNA sequence from clone RP11-274B18 on chromosome 9 Contains the 3' end of the PGM5 gene for phosphoglucomutase 5 (PGMRP), a novel gene (MGC34760), a squamous cell carcinoma antigen recognized by T cell (SART2) pseudogene and 2 novel genes, complete sequence Length = 169993 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tccaacaacagaaaacactg 494 |||||||||||||||||||| Sbjct: 9728 tccaacaacagaaaacactg 9709
>gb|AY265358.1| Homo sapiens glycoprotein receptor gp330/megalin precursor, mRNA, complete cds Length = 14044 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 ttcttacttgccaatgattc 403 |||||||||||||||||||| Sbjct: 4199 ttcttacttgccaatgattc 4218
>gb|AY265357.1| Homo sapiens glycoprotein receptor gp330/megalin precursor, mRNA, complete cds Length = 14042 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 ttcttacttgccaatgattc 403 |||||||||||||||||||| Sbjct: 4202 ttcttacttgccaatgattc 4221
>gb|AC153008.4| Mus musculus BAC clone RP23-457I7 from chromosome 15, complete sequence Length = 171878 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ccctgacttccatctacagt 200 |||||||||||||||||||| Sbjct: 28963 ccctgacttccatctacagt 28982
>gb|AE014177.1| Mus musculus piebald deletion region section 5 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gaagagtttatatttaataa 295 |||||||||||||||||||| Sbjct: 280847 gaagagtttatatttaataa 280828
>gb|AC182393.2| Pan troglodytes BAC clone CH251-503C15 from chromosome 9, complete sequence Length = 230693 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tccaacaacagaaaacactg 494 |||||||||||||||||||| Sbjct: 226247 tccaacaacagaaaacactg 226228
>gb|AC104978.2| Homo sapiens chromosome 11, clone RP11-244O16, complete sequence Length = 154105 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 aaattgatgttcagtcttgt 466 |||||||||||||||||||| Sbjct: 105763 aaattgatgttcagtcttgt 105782
>ref|NM_183342.2| Danio rerio prickle-like 1 (Drosophila) (prickle1), mRNA Length = 2698 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cttgtatttcttacttgcca 396 |||||||||||||||||||| Sbjct: 1564 cttgtatttcttacttgcca 1545
>ref|NM_004525.1| Homo sapiens low density lipoprotein-related protein 2 (LRP2), mRNA Length = 14392 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 ttcttacttgccaatgattc 403 |||||||||||||||||||| Sbjct: 4239 ttcttacttgccaatgattc 4258
>gb|AC007556.3| Homo sapiens BAC clone RP11-18C9 from 2, complete sequence Length = 167358 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ttcttacttgccaatgattc 403 |||||||||||||||||||| Sbjct: 147702 ttcttacttgccaatgattc 147683
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ttcttacttgccaatgattc 403 |||||||||||||||||||| Sbjct: 426690 ttcttacttgccaatgattc 426671
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 atttgttgatggacttagag 528 |||||||||||||||||||| Sbjct: 2496839 atttgttgatggacttagag 2496820
>gb|U33837.1|HSU33837 Human glycoprotein receptor gp330 precursor, mRNA, complete cds Length = 14392 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 ttcttacttgccaatgattc 403 |||||||||||||||||||| Sbjct: 4239 ttcttacttgccaatgattc 4258 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,478,577 Number of Sequences: 3902068 Number of extensions: 6478577 Number of successful extensions: 122705 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122523 Number of HSP's gapped (non-prelim): 178 length of query: 651 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 628 effective length of database: 17,143,297,704 effective search space: 10765990958112 effective search space used: 10765990958112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
