ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags22o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GDA1_SCHPO (Q9UT35) Guanosine-diphosphatase (EC 3.6.1.42) (GDPase) 34 0.41
2KLF16_HUMAN (Q9BXK1) Krueppel-like factor 16 (Transcription fact... 33 0.54
3SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-su... 32 1.2
4SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-su... 32 1.6
5SCNAA_RAT (P37089) Amiloride-sensitive sodium channel alpha-subu... 32 2.0
6CT165_MOUSE (Q9DA57) Protein C20orf165 homolog 30 4.6
7GFPT2_RAT (Q4KMC4) Glucosamine--fructose-6-phosphate aminotransf... 30 4.6
8DAPA_ARCFU (O29352) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 30 4.6
9SOX14_DROME (P40656) Putative transcription factor SOX-14 30 6.0
10GFPT2_MOUSE (Q9Z2Z9) Glucosamine--fructose-6-phosphate aminotran... 30 6.0
11ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phyt... 30 7.8
12MSHR_SEMEN (Q864I8) Melanocyte-stimulating hormone receptor (MSH... 30 7.8

>GDA1_SCHPO (Q9UT35) Guanosine-diphosphatase (EC 3.6.1.42) (GDPase)|
          Length = 556

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 429 PRFVEDGHSRFDGTSEYKLDKNG---KIYQH 512
           PRF  DG S  DG  +Y LD NG   ++YQH
Sbjct: 296 PRFASDGESLVDGDHKYVLDYNGEQYELYQH 326



to top

>KLF16_HUMAN (Q9BXK1) Krueppel-like factor 16 (Transcription factor BTEB4)|
           (Basic transcription element-binding protein 4)
           (BTE-binding protein 4) (Novel Sp1-like zinc finger
           transcription factor 2) (Transcription factor NSLP2)
          Length = 252

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 201 PPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPAQG 46
           PPAASG     + +        L D    PG  P   +P + ++AASSP+ G
Sbjct: 62  PPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSSG 113



to top

>SCNAA_RABIT (O97741) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 640

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 231 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPL-PDAESPPGTLP*SLAPRTEAAAASSP 55
           W P R   GA   AS   +P S   S F PHP  P    P  TLP SL     A A   P
Sbjct: 570 WSPGRGAGGAREVAS---SPVSALPSRFCPHPTSPSVPQPGPTLPPSLTAPPPAYATLGP 626



to top

>SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 699

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 24/60 (40%), Positives = 26/60 (43%)
 Frame = -2

Query: 231 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSPA 52
           W P R  +GA   AS   TP S   S F PHP     SPP +LP        A  A  PA
Sbjct: 620 WSPGRGARGAREVAS---TPASSFPSRFCPHP----TSPPPSLPQQGTTPPLALTAPPPA 672



to top

>SCNAA_RAT (P37089) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 698

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = -2

Query: 231 WVPRRIRQGAPPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP 100
           W P R  +GA   AS   TP S   S F PHP     SPP +LP
Sbjct: 620 WSPGRGARGAREVAS---TPASSFPSRFCPHP----TSPPPSLP 656



to top

>CT165_MOUSE (Q9DA57) Protein C20orf165 homolog|
          Length = 226

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -2

Query: 201 PPAASGWRTPCSRSTSAFL-----PHPLPDAESPPGTLP*SLAPRTEAAAA 64
           P  + GW  PCSRS + +L     P PL      PG LP S     + AA+
Sbjct: 99  PLESLGWADPCSRSRAPYLGGPSRPRPLLLCGLSPGVLPISSEAGGKEAAS 149



to top

>GFPT2_RAT (Q4KMC4) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate
           aminotransferase 2) (D-fructose-6-phosphate
           amidotransferase 2) (GFAT 2) (GFAT2)
          Length = 681

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 360 IDIATIWQPVDNVIMVRWIVHGIPRFVEDGHSRFDGTSEYKLDKNGKIYQHK 515
           +D+   ++    +   RW  HG+P  V     R D  +E+ +  NG I  +K
Sbjct: 75  MDLKVEFETHFGIAHTRWATHGVPNVVNSHPQRSDKDNEFVVIHNGIITNYK 126



to top

>DAPA_ARCFU (O29352) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 289

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
 Frame = -3

Query: 380 PYSSNVNPQGLEENLAGKAQRPEYPFIAIN---------THEFTERIFE-DNIFSVNVKA 231
           PY +  N +GL ++    A     P I  N         T E   R+ E DNIF +   +
Sbjct: 102 PYYNKPNAEGLYQHYKAVASEVSIPIIVYNVPSRTGINTTPELVRRLAEIDNIFGIKEAS 161

Query: 230 GFLAEYVRELLPQRPD 183
           G L + + E++   PD
Sbjct: 162 GNLKQ-ISEIIRTTPD 176



to top

>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 225 PRRIRQGAPPAASGWRTPCSRSTSAFLP-HPLPDAESPPGTLP*SLAPRTEAAAASSPA 52
           P  +R G  P      TP   +T      HP P A+S P TLP   +P    A++ SPA
Sbjct: 13  PLSLRPGTVPTVPA-TTPARPATITIQRRHPAPKADSTPHTLP-PFSPSPSPASSPSPA 69



to top

>GFPT2_MOUSE (Q9Z2Z9) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate
           aminotransferase 2) (D-fructose-6-phosphate
           amidotransferase 2) (GFAT 2) (GFAT2)
          Length = 681

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 360 IDIATIWQPVDNVIMVRWIVHGIPRFVEDGHSRFDGTSEYKLDKNGKIYQHK 515
           +D+   ++    +   RW  HG+P  V     R D  +E+ +  NG I  +K
Sbjct: 75  MDLKVEFETHFGIAHTRWATHGVPNAVNSHPQRSDKDNEFVVIHNGIITNYK 126



to top

>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like|
           protein)
          Length = 349

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 204 APPAASGWRTPCSRSTSAFLPHPLPDAESPPGTLP*SLAPRTEAAAASSP 55
           +PPA     +P S S++     P P A     T+P S AP T    + +P
Sbjct: 216 SPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSSAPMTSPPGSMAP 265



to top

>MSHR_SEMEN (Q864I8) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 317

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 285 VGIDSYKRIFWALRFTGQIFFKALWIDIATIW 380
           + +D Y  IF+ALR+   +  +  W  +A IW
Sbjct: 138 IAVDRYISIFYALRYHSIVTLRRAWRVVAAIW 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,382,902
Number of Sequences: 219361
Number of extensions: 1916149
Number of successful extensions: 6792
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6761
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top