Clone Information

BLAST Search Result

Clone Name	bags23c09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK099764.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	394	e-106
2	dbj\|AK103794.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	394	e-106
3	dbj\|AK121899.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	387	e-104
4	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	210	4e-51
5	dbj\|AP003620.3\| Oryza sativa (japonica cultivar-group) genomic D...	210	4e-51
6	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	44	0.59
7	ref\|XM_712823.1\| Candida albicans SC5314 putative transporter/se...	44	0.59
8	ref\|XM_712757.1\| Candida albicans SC5314 putative transporter/se...	44	0.59
9	gb\|AC146719.32\| Medicago truncatula clone mth2-17f11, complete s...	44	0.59
10	gb\|AC151571.1\| Latimeria menadoensis clone VMRC4-140H19, complet...	42	2.3
11	gb\|AC018449.11\| Homo sapiens 3 BAC RP11-26G10 (Roswell Park Canc...	42	2.3
12	emb\|BX936398.1\| Yersinia pseudotuberculosis IP32953 genome, comp...	42	2.3
13	emb\|BX511223.6\| Zebrafish DNA sequence from clone DKEYP-96B6 in ...	42	2.3
14	gb\|AC034242.6\| Homo sapiens chromosome 5 clone CTD-2514M18, comp...	42	2.3
15	gb\|AE001437.1\| Clostridium acetobutylicum ATCC 824, complete genome	42	2.3
16	gb\|AC113326.9\| Mus musculus chromosome 1, clone RP23-454G7, comp...	42	2.3
17	gb\|CP000013.1\| Borrelia garinii PBi, complete genome	40	9.2
18	gb\|AC149417.1\| Phakopsora pachyrhizi clone JGIAFNA-77J13, comple...	40	9.2
19	gb\|AE008560.1\| Streptococcus pneumoniae R6 section 176 of 184 of...	40	9.2
20	gb\|AC027644.9\| Homo sapiens BAC clone RP11-792A8 from 7, complet...	40	9.2
21	emb\|AL662904.4\| Human DNA sequence from clone RP11-157N3 on chro...	40	9.2
22	emb\|AL080241.14\|HSA541J16 Human DNA sequence from clone RP11-541...	40	9.2
23	gb\|AC158506.9\| Pan troglodytes clone rp43-145f17, complete sequence	40	9.2
24	dbj\|AP007171.1\| Aspergillus oryzae RIB40 genomic DNA, SC011	40	9.2
25	gb\|AY546326.1\| Isognomostoma isognomostoma internal transcribed ...	40	9.2
26	gb\|AC068561.2\|AC068561 Mus musculus strain C57BL6/J chromosome 6...	40	9.2
27	gb\|AF162137.2\|AF162137 Mus musculus WNT-2 gene, partial cds; put...	40	9.2
28	gb\|AC153952.4\| Mus musculus 10 BAC RP24-82M14 (Roswell Park Canc...	40	9.2
29	gb\|AE010299.1\| Methanosarcina acetivorans str. C2A, complete genome	40	9.2
30	emb\|BX897685.6\| Zebrafish DNA sequence from clone CH211-234H8, c...	40	9.2
31	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
32	dbj\|AP002910.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
33	gb\|AC073525.25\| Homo sapiens 12 BAC RP11-81K13 (Roswell Park Can...	40	9.2
34	gb\|AE005672.2\| Streptococcus pneumoniae TIGR4, complete genome	40	9.2
35	gb\|AC158647.2\| Mus musculus 6 BAC RP23-275N13 (Roswell Park Canc...	40	9.2
36	dbj\|AK069337.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.2
37	gb\|AE000657.1\| Aquifex aeolicus VF5, complete genome	40	9.2
38	emb\|AL591973.1\| Listeria monocytogenes strain EGD, complete geno...	40	9.2
39	gb\|CP000183.1\| Drosophila melanogaster genomic scaffold 21100002...	40	9.2
40	gb\|AC127238.5\| Mus musculus BAC clone RP24-378P20 from 7, comple...	40	9.2
41	dbj\|AP006627.1\| Bacillus clausii KSM-K16 DNA, complete genome	40	9.2
42	gb\|AE017262.2\| Listeria monocytogenes str. 4b F2365, complete ge...	40	9.2
43	gb\|AC171001.2\| Mus musculus BAC clone RP23-317I13 from chromosom...	40	9.2
44	emb\|AL805921.7\| Mouse DNA sequence from clone RP23-293N9 on chro...	40	9.2

>dbj|AK099764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094N16, full
            insert sequence
          Length = 2836

 Score =  394 bits (199), Expect = e-106
 Identities = 532/643 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    gcaaaaaggaagatagtaaattgcagaatgtgcagcgtccaattgaagttccaaaggaaa 60
            ||||||||| |||| |||||||||| ||||||||   || || ||||| | |||| | ||
Sbjct: 626  gcaaaaagggagatggtaaattgcaaaatgtgcaagctcaaactgaagcttcaaatggaa 685

                                                                        
Query: 61   aactgcattcagtagtgttggaagaggtgaaggaagaactttcagctgatgaattgtttg 120
            || | || |||  |||| |||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 686  aattacaatcaaaagtgctggaggaggtgaaggaggaactttcagctgaggaattatttg 745

                                                                        
Query: 121  agaaaaagaagtctcagcttgctgaattagggatggccatgcttgaagatcctgaatcaa 180
            ||||||||||| | ||||| |||||| |||||||| | ||||||||||||||||||||| 
Sbjct: 746  agaaaaagaaggcccagctggctgaaatagggatgtctatgcttgaagatcctgaatcac 805

                                                                        
Query: 181  acattagatctctgaatgatttgctaattatatgcaacgatacagaccaaacggttgtta 240
            | ||||||||||| |||||| || |||  |||||||| || | |||||| | ||||||||
Sbjct: 806  atattagatctctaaatgatatgttaaacatatgcaatgacaaagaccagaaggttgtta 865

                                                                        
Query: 241  aacttggtattatgtccttgcttgctgtgttcagggacataattcctagttatcggatta 300
            ||||| || | ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 866  aacttagtctgatgtccttgcttgctgtgttcagggacattattcctagttaccgcatta 925

                                                                        
Query: 301  ggcagctgacggaaaaagagcttgccgtagaagtttcgaaagaagtgaagaagacgagat 360
            ||||| |||| |||||||||||| | ||||| ||||| ||||| || || |||| |||||
Sbjct: 926  ggcagttgacagaaaaagagcttacggtagaggtttcaaaagatgtaaaaaagatgagat 985

                                                                        
Query: 361  attatgagtacacgcttattcgttcctacaaggcatacctgcagaaattgatatcattgg 420
            ||||||| ||||| ||| |||| |||||||||||||||||||| || || || || ||||
Sbjct: 986  attatgaatacacacttcttcgctcctacaaggcatacctgcaaaagttaatctccttgg 1045

                                                                        
Query: 421  agaagcaaccctatttttatcttgtggcagttcgttgcttgtgtagtttattagatgctg 480
            ||||||||||  ||||||    | |||| ||||||||| |||||| |||| ||||| |||
Sbjct: 1046 agaagcaaccaaatttttccgctctggctgttcgttgcatgtgtactttactagatactg 1105

                                                                        
Query: 481  ccccacactttaaccaccgcgaaagcttactggccagtgtggtcagaaatttaagctcct 540
            | ||||| || |||  ||| |||||  |||| ||||| ||||  ||||||||||| ||  
Sbjct: 1106 ctccacatttcaacttccgtgaaagtatacttgccagcgtggcaagaaatttaagttctc 1165

                                                                        
Query: 541  cgaatgatgtagcaaggaaactatgttccgaggcaataagatctctatttagaaatgaag 600
            |  |||||| ||  |||||| | ||||  ||  | ||||| |||||||||  | ||||||
Sbjct: 1166 cagatgatgcagtgaggaaaatgtgttgtgaaacgataaggtctctatttgtagatgaag 1225

                                                       
Query: 601  gaaaacatcgtggtgaggcaactgttgaagcagtaagattgat 643
            |||| |||||||||||||||||||||||||| || ||||||||
Sbjct: 1226 gaaagcatcgtggtgaggcaactgttgaagctgtgagattgat 1268

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>dbj|AK103794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O08, full
            insert sequence
          Length = 3063

 Score =  394 bits (199), Expect = e-106
 Identities = 532/643 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    gcaaaaaggaagatagtaaattgcagaatgtgcagcgtccaattgaagttccaaaggaaa 60
            ||||||||| |||| |||||||||| ||||||||   || || ||||| | |||| | ||
Sbjct: 565  gcaaaaagggagatggtaaattgcaaaatgtgcaagctcaaactgaagcttcaaatggaa 624

                                                                        
Query: 61   aactgcattcagtagtgttggaagaggtgaaggaagaactttcagctgatgaattgtttg 120
            || | || |||  |||| |||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 625  aattacaatcaaaagtgctggaggaggtgaaggaggaactttcagctgaggaattatttg 684

                                                                        
Query: 121  agaaaaagaagtctcagcttgctgaattagggatggccatgcttgaagatcctgaatcaa 180
            ||||||||||| | ||||| |||||| |||||||| | ||||||||||||||||||||| 
Sbjct: 685  agaaaaagaaggcccagctggctgaaatagggatgtctatgcttgaagatcctgaatcac 744

                                                                        
Query: 181  acattagatctctgaatgatttgctaattatatgcaacgatacagaccaaacggttgtta 240
            | ||||||||||| |||||| || |||  |||||||| || | |||||| | ||||||||
Sbjct: 745  atattagatctctaaatgatatgttaaacatatgcaatgacaaagaccagaaggttgtta 804

                                                                        
Query: 241  aacttggtattatgtccttgcttgctgtgttcagggacataattcctagttatcggatta 300
            ||||| || | ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 805  aacttagtctgatgtccttgcttgctgtgttcagggacattattcctagttaccgcatta 864

                                                                        
Query: 301  ggcagctgacggaaaaagagcttgccgtagaagtttcgaaagaagtgaagaagacgagat 360
            ||||| |||| |||||||||||| | ||||| ||||| ||||| || || |||| |||||
Sbjct: 865  ggcagttgacagaaaaagagcttacggtagaggtttcaaaagatgtaaaaaagatgagat 924

                                                                        
Query: 361  attatgagtacacgcttattcgttcctacaaggcatacctgcagaaattgatatcattgg 420
            ||||||| ||||| ||| |||| |||||||||||||||||||| || || || || ||||
Sbjct: 925  attatgaatacacacttcttcgctcctacaaggcatacctgcaaaagttaatctccttgg 984

                                                                        
Query: 421  agaagcaaccctatttttatcttgtggcagttcgttgcttgtgtagtttattagatgctg 480
            ||||||||||  ||||||    | |||| ||||||||| |||||| |||| ||||| |||
Sbjct: 985  agaagcaaccaaatttttccgctctggctgttcgttgcatgtgtactttactagatactg 1044

                                                                        
Query: 481  ccccacactttaaccaccgcgaaagcttactggccagtgtggtcagaaatttaagctcct 540
            | ||||| || |||  ||| |||||  |||| ||||| ||||  ||||||||||| ||  
Sbjct: 1045 ctccacatttcaacttccgtgaaagtatacttgccagcgtggcaagaaatttaagttctc 1104

                                                                        
Query: 541  cgaatgatgtagcaaggaaactatgttccgaggcaataagatctctatttagaaatgaag 600
            |  |||||| ||  |||||| | ||||  ||  | ||||| |||||||||  | ||||||
Sbjct: 1105 cagatgatgcagtgaggaaaatgtgttgtgaaacgataaggtctctatttgtagatgaag 1164

                                                       
Query: 601  gaaaacatcgtggtgaggcaactgttgaagcagtaagattgat 643
            |||| |||||||||||||||||||||||||| || ||||||||
Sbjct: 1165 gaaagcatcgtggtgaggcaactgttgaagctgtgagattgat 1207

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>dbj|AK121899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105F16, full
            insert sequence
          Length = 2880

 Score =  387 bits (195), Expect = e-104
 Identities = 531/643 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    gcaaaaaggaagatagtaaattgcagaatgtgcagcgtccaattgaagttccaaaggaaa 60
            ||||||||| |||| |||||||||| ||||||||   || || ||||| | |||| | ||
Sbjct: 565  gcaaaaagggagatggtaaattgcaaaatgtgcaagctcaaactgaagcttcaaatggaa 624

                                                                        
Query: 61   aactgcattcagtagtgttggaagaggtgaaggaagaactttcagctgatgaattgtttg 120
            || | || |||  |||| |||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 625  aattacaatcaaaagtgctggaggaggtgaaggaggaactttcagctgaggaattatttg 684

                                                                        
Query: 121  agaaaaagaagtctcagcttgctgaattagggatggccatgcttgaagatcctgaatcaa 180
            ||||||||||| | ||||| |||||| |||||||| | ||||||||||||||||||||| 
Sbjct: 685  agaaaaagaaggcccagctggctgaaatagggatgtctatgcttgaagatcctgaatcac 744

                                                                        
Query: 181  acattagatctctgaatgatttgctaattatatgcaacgatacagaccaaacggttgtta 240
            | ||||||||||| |||||| || |||  |||||||| || | ||||||   ||||||||
Sbjct: 745  atattagatctctaaatgatatgttaaacatatgcaatgacaaagaccaggaggttgtta 804

                                                                        
Query: 241  aacttggtattatgtccttgcttgctgtgttcagggacataattcctagttatcggatta 300
            ||||| || | ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 805  aacttagtctgatgtccttgcttgctgtgttcagggacattattcctagttaccgcatta 864

                                                                        
Query: 301  ggcagctgacggaaaaagagcttgccgtagaagtttcgaaagaagtgaagaagacgagat 360
            ||||| |||| |||||||||||| | ||||| ||||| ||||| || || |||| |||||
Sbjct: 865  ggcagttgacagaaaaagagcttacggtagaggtttcaaaagatgtaaaaaagatgagat 924

                                                                        
Query: 361  attatgagtacacgcttattcgttcctacaaggcatacctgcagaaattgatatcattgg 420
            ||||||| ||||| ||| |||| |||||||||||||||||||| || || || || ||||
Sbjct: 925  attatgaatacacacttcttcgctcctacaaggcatacctgcaaaagttaatctccttgg 984

                                                                        
Query: 421  agaagcaaccctatttttatcttgtggcagttcgttgcttgtgtagtttattagatgctg 480
            ||||||||||  ||||||    | |||| ||||||||| |||||| |||| ||||| |||
Sbjct: 985  agaagcaaccaaatttttccgctctggctgttcgttgcatgtgtactttactagatactg 1044

                                                                        
Query: 481  ccccacactttaaccaccgcgaaagcttactggccagtgtggtcagaaatttaagctcct 540
            | ||||| || |||  ||| |||||  |||| ||||| ||||  ||||||||||| ||  
Sbjct: 1045 ctccacatttcaacttccgtgaaagtatacttgccagcgtggcaagaaatttaagttctc 1104

                                                                        
Query: 541  cgaatgatgtagcaaggaaactatgttccgaggcaataagatctctatttagaaatgaag 600
            |  |||||| ||  |||||| | ||||  ||  | ||||| |||||||||  | ||||||
Sbjct: 1105 cagatgatgcagtgaggaaaatgtgttgtgaaacgataaggtctctatttgtagatgaag 1164

                                                       
Query: 601  gaaaacatcgtggtgaggcaactgttgaagcagtaagattgat 643
            |||| |||||||||||||||||||||||||| || ||||||||
Sbjct: 1165 gaaagcatcgtggtgaggcaactgttgaagctgtgagattgat 1207

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  210 bits (106), Expect = 4e-51
 Identities = 181/206 (87%)
 Strand = Plus / Plus

                                                                            
Query: 84       gaggtgaaggaagaactttcagctgatgaattgtttgagaaaaagaagtctcagcttgct 143
                ||||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||| |||
Sbjct: 17289352 gaggtgaaggaggaactttcagctgaggaattatttgagaaaaagaaggcccagctggct 17289411

                                                                            
Query: 144      gaattagggatggccatgcttgaagatcctgaatcaaacattagatctctgaatgatttg 203
                ||| |||||||| | ||||||||||||||||||||| | ||||||||||| |||||| ||
Sbjct: 17289412 gaaatagggatgtctatgcttgaagatcctgaatcacatattagatctctaaatgatatg 17289471

                                                                            
Query: 204      ctaattatatgcaacgatacagaccaaacggttgttaaacttggtattatgtccttgctt 263
                 |||  |||||||| || | |||||| | ||||||||||||| || | ||||||||||||
Sbjct: 17289472 ttaaacatatgcaatgacaaagaccagaaggttgttaaacttagtctgatgtccttgctt 17289531

                                          
Query: 264      gctgtgttcagggacataattcctag 289
                ||||||||||||||||| ||||||||
Sbjct: 17289532 gctgtgttcagggacattattcctag 17289557



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                            
Query: 288      agttatcggattaggcagctgacggaaaaagagcttgccgtagaagtttcgaaagaagtg 347
                ||||| || ||||||||| |||| |||||||||||| | ||||| ||||| ||||| || 
Sbjct: 17289638 agttaccgcattaggcagttgacagaaaaagagcttacggtagaggtttcaaaagatgta 17289697

                                                              
Query: 348      aagaagacgagatattatgagtacacgcttattcgttcctacaagg 393
                || |||| |||||||||||| ||||| ||| |||| ||||||||||
Sbjct: 17289698 aaaaagatgagatattatgaatacacacttcttcgctcctacaagg 17289743



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                            
Query: 576      ataagatctctatttagaaatgaaggaaaacatcgtggtgaggcaactgttgaagcagta 635
                ||||| |||||||||  | |||||||||| |||||||||||||||||||||||||| || 
Sbjct: 17290573 ataaggtctctatttgtagatgaaggaaagcatcgtggtgaggcaactgttgaagctgtg 17290632

                        
Query: 636      agattgat 643
                ||||||||
Sbjct: 17290633 agattgat 17290640



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 116/145 (80%)
 Strand = Plus / Plus

                                                                            
Query: 391      aggcatacctgcagaaattgatatcattggagaagcaaccctatttttatcttgtggcag 450
                ||||||||||||| || || || || ||||||||||||||  ||||||    | |||| |
Sbjct: 17290126 aggcatacctgcaaaagttaatctccttggagaagcaaccaaatttttccgctctggctg 17290185

                                                                            
Query: 451      ttcgttgcttgtgtagtttattagatgctgccccacactttaaccaccgcgaaagcttac 510
                |||||||| |||||| |||| ||||| |||| ||||| || |||  ||| |||||  |||
Sbjct: 17290186 ttcgttgcatgtgtactttactagatactgctccacatttcaacttccgtgaaagtatac 17290245

                                         
Query: 511      tggccagtgtggtcagaaatttaag 535
                | ||||| ||||  |||||||||||
Sbjct: 17290246 ttgccagcgtggcaagaaatttaag 17290270

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>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H06
          Length = 142832

 Score =  210 bits (106), Expect = 4e-51
 Identities = 181/206 (87%)
 Strand = Plus / Plus

                                                                         
Query: 84    gaggtgaaggaagaactttcagctgatgaattgtttgagaaaaagaagtctcagcttgct 143
             ||||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||| |||
Sbjct: 25945 gaggtgaaggaggaactttcagctgaggaattatttgagaaaaagaaggcccagctggct 26004

                                                                         
Query: 144   gaattagggatggccatgcttgaagatcctgaatcaaacattagatctctgaatgatttg 203
             ||| |||||||| | ||||||||||||||||||||| | ||||||||||| |||||| ||
Sbjct: 26005 gaaatagggatgtctatgcttgaagatcctgaatcacatattagatctctaaatgatatg 26064

                                                                         
Query: 204   ctaattatatgcaacgatacagaccaaacggttgttaaacttggtattatgtccttgctt 263
              |||  |||||||| || | |||||| | ||||||||||||| || | ||||||||||||
Sbjct: 26065 ttaaacatatgcaatgacaaagaccagaaggttgttaaacttagtctgatgtccttgctt 26124

                                       
Query: 264   gctgtgttcagggacataattcctag 289
             ||||||||||||||||| ||||||||
Sbjct: 26125 gctgtgttcagggacattattcctag 26150



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 90/106 (84%)
 Strand = Plus / Plus

                                                                         
Query: 288   agttatcggattaggcagctgacggaaaaagagcttgccgtagaagtttcgaaagaagtg 347
             ||||| || ||||||||| |||| |||||||||||| | ||||| ||||| ||||| || 
Sbjct: 26231 agttaccgcattaggcagttgacagaaaaagagcttacggtagaggtttcaaaagatgta 26290

                                                           
Query: 348   aagaagacgagatattatgagtacacgcttattcgttcctacaagg 393
             || |||| |||||||||||| ||||| ||| |||| ||||||||||
Sbjct: 26291 aaaaagatgagatattatgaatacacacttcttcgctcctacaagg 26336



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                         
Query: 576   ataagatctctatttagaaatgaaggaaaacatcgtggtgaggcaactgttgaagcagta 635
             ||||| |||||||||  | |||||||||| |||||||||||||||||||||||||| || 
Sbjct: 27166 ataaggtctctatttgtagatgaaggaaagcatcgtggtgaggcaactgttgaagctgtg 27225

                     
Query: 636   agattgat 643
             ||||||||
Sbjct: 27226 agattgat 27233



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 116/145 (80%)
 Strand = Plus / Plus

                                                                         
Query: 391   aggcatacctgcagaaattgatatcattggagaagcaaccctatttttatcttgtggcag 450
             ||||||||||||| || || || || ||||||||||||||  ||||||    | |||| |
Sbjct: 26719 aggcatacctgcaaaagttaatctccttggagaagcaaccaaatttttccgctctggctg 26778

                                                                         
Query: 451   ttcgttgcttgtgtagtttattagatgctgccccacactttaaccaccgcgaaagcttac 510
             |||||||| |||||| |||| ||||| |||| ||||| || |||  ||| |||||  |||
Sbjct: 26779 ttcgttgcatgtgtactttactagatactgctccacatttcaacttccgtgaaagtatac 26838

                                      
Query: 511   tggccagtgtggtcagaaatttaag 535
             | ||||| ||||  |||||||||||
Sbjct: 26839 ttgccagcgtggcaagaaatttaag 26863

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 104     agctgatgaattgtttgagaaa 125
               ||||||||||||||||||||||
Sbjct: 1425337 agctgatgaattgtttgagaaa 1425358

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>ref|XM_712823.1| Candida albicans SC5314 putative transporter/sensor (CaO19_3225),
            mRNA
          Length = 3069

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 400  tgcagaaattgatatcattgga 421
            ||||||||||||||||||||||
Sbjct: 2217 tgcagaaattgatatcattgga 2238

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>ref|XM_712757.1| Candida albicans SC5314 putative transporter/sensor (CaO19_10735),
            mRNA
          Length = 3069

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 400  tgcagaaattgatatcattgga 421
            ||||||||||||||||||||||
Sbjct: 2217 tgcagaaattgatatcattgga 2238

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>gb|AC146719.32| Medicago truncatula clone mth2-17f11, complete sequence
          Length = 127364

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 574   caataagatctctatttagaaa 595
             ||||||||||||||||||||||
Sbjct: 93446 caataagatctctatttagaaa 93467

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>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence
          Length = 187392

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   tgatgaattgtttgagaaaaa 127
             |||||||||||||||||||||
Sbjct: 82824 tgatgaattgtttgagaaaaa 82804

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>gb|AC018449.11| Homo sapiens 3 BAC RP11-26G10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157426

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   aatgatttgctaattatatgc 215
             |||||||||||||||||||||
Sbjct: 29974 aatgatttgctaattatatgc 29954

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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 388    acaaggcatacctgcagaaat 408
              |||||||||||||||||||||
Sbjct: 272998 acaaggcatacctgcagaaat 273018

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>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14,
             complete sequence
          Length = 190254

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 602   aaaacatcgtggtgaggcaac 622
             |||||||||||||||||||||
Sbjct: 57649 aaaacatcgtggtgaggcaac 57629

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>gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, complete sequence
          Length = 221452

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   agggacataattcctagttat 293
             |||||||||||||||||||||
Sbjct: 93199 agggacataattcctagttat 93219

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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 124     aaaagaagtctcagcttgctg 144
               |||||||||||||||||||||
Sbjct: 3370556 aaaagaagtctcagcttgctg 3370536

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>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence
          Length = 192734

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 584    tctatttagaaatgaaggaaaacat 608
              |||||| ||||||||||||||||||
Sbjct: 129512 tctattaagaaatgaaggaaaacat 129536

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>gb|CP000013.1| Borrelia garinii PBi, complete genome
          Length = 904246

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    tatttttatcttgtggcagt 451
              ||||||||||||||||||||
Sbjct: 306060 tatttttatcttgtggcagt 306041

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>gb|AC149417.1| Phakopsora pachyrhizi clone JGIAFNA-77J13, complete sequence
          Length = 32547

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   aaaagaagtctcagcttgct 143
             ||||||||||||||||||||
Sbjct: 11489 aaaagaagtctcagcttgct 11508

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>gb|AE008560.1| Streptococcus pneumoniae R6 section 176 of 184 of the complete genome
          Length = 10483

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  gatgaattgtttgagaaaaa 127
            ||||||||||||||||||||
Sbjct: 8707 gatgaattgtttgagaaaaa 8688

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>gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complete sequence
          Length = 188207

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    ctgatgaattgtttgagaaa 125
              ||||||||||||||||||||
Sbjct: 119240 ctgatgaattgtttgagaaa 119221

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>emb|AL662904.4| Human DNA sequence from clone RP11-157N3 on chromosome 1 Contains the
             3' end of a novel gene, complete sequence
          Length = 111042

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   tctatttagaaatgaaggaa 603
             ||||||||||||||||||||
Sbjct: 45279 tctatttagaaatgaaggaa 45260

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>emb|AL080241.14|HSA541J16 Human DNA sequence from clone RP11-541J16 on chromosome 22 Contains STSs
              and GSSs, complete sequence
          Length = 104846

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 625    ttgaagcagtaagattgata 644
              ||||||||||||||||||||
Sbjct: 102164 ttgaagcagtaagattgata 102183

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>gb|AC158506.9| Pan troglodytes clone rp43-145f17, complete sequence
          Length = 155707

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 625    ttgaagcagtaagattgata 644
              ||||||||||||||||||||
Sbjct: 107082 ttgaagcagtaagattgata 107063

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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gcaaaaaggaagatagtaaa 20
              ||||||||||||||||||||
Sbjct: 526580 gcaaaaaggaagatagtaaa 526599

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>gb|AY546326.1| Isognomostoma isognomostoma internal transcribed spacer 1, partial
           sequence
          Length = 390

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 304 agctgacggaaaaagagcttgccg 327
           ||||||||||||||||||| ||||
Sbjct: 103 agctgacggaaaaagagctcgccg 126

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>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete
              sequence
          Length = 230839

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     aggaaaaactgcattcagta 74
              ||||||||||||||||||||
Sbjct: 185888 aggaaaaactgcattcagta 185869

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>gb|AF162137.2|AF162137 Mus musculus WNT-2 gene, partial cds; putative ankyrin-related protein
             and cystic fibrosis transmembrane conductance regulator
             (CFTR) genes, complete cds; and unknown gene
          Length = 357856

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aggaaaaactgcattcagta 74
             ||||||||||||||||||||
Sbjct: 19097 aggaaaaactgcattcagta 19078

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>gb|AC153952.4| Mus musculus 10 BAC RP24-82M14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183398

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 585    ctatttagaaatgaaggaaa 604
              ||||||||||||||||||||
Sbjct: 134168 ctatttagaaatgaaggaaa 134187

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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 581    atctctatttagaaatgaag 600
              ||||||||||||||||||||
Sbjct: 558478 atctctatttagaaatgaag 558459

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>emb|BX897685.6| Zebrafish DNA sequence from clone CH211-234H8, complete sequence
          Length = 179286

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   aaaagaagtctcagcttgctgaat 147
             ||||||||||||| ||||||||||
Sbjct: 28965 aaaagaagtctcaccttgctgaat 28942

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 53       aaaggaaaaactgcattcag 72
                ||||||||||||||||||||
Sbjct: 25974106 aaaggaaaaactgcattcag 25974087

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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aaaggaaaaactgcattcag 72
             ||||||||||||||||||||
Sbjct: 70173 aaaggaaaaactgcattcag 70154

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>gb|AC073525.25| Homo sapiens 12 BAC RP11-81K13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 142475

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 631   cagtaagattgatatcagct 650
             ||||||||||||||||||||
Sbjct: 91946 cagtaagattgatatcagct 91965

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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     gatgaattgtttgagaaaaa 127
               ||||||||||||||||||||
Sbjct: 2070472 gatgaattgtttgagaaaaa 2070453

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>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208007

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     aggaaaaactgcattcagta 74
              ||||||||||||||||||||
Sbjct: 112426 aggaaaaactgcattcagta 112407

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>dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F07, full
            insert sequence
          Length = 1887

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   aaaggaaaaactgcattcag 72
            ||||||||||||||||||||
Sbjct: 1887 aaaggaaaaactgcattcag 1868

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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tggaagaggtgaaggaagaa 98
              ||||||||||||||||||||
Sbjct: 404078 tggaagaggtgaaggaagaa 404097

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>emb|AL591973.1| Listeria monocytogenes strain EGD, complete genome, segment 1/12
          Length = 200050

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   ttggtattatgtccttgcttgctg 267
             |||||||||||| |||||||||||
Sbjct: 17504 ttggtattatgtacttgcttgctg 17527

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>gb|CP000183.1| Drosophila melanogaster genomic scaffold 211000022280458
          Length = 100390

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 332   agtttcgaaagaagtgaagaagac 355
             ||||||||||||||| ||||||||
Sbjct: 62275 agtttcgaaagaagtcaagaagac 62252

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>gb|AC127238.5| Mus musculus BAC clone RP24-378P20 from 7, complete sequence
          Length = 224224

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aaaaaggaagatagtaaatt 22
             ||||||||||||||||||||
Sbjct: 45205 aaaaaggaagatagtaaatt 45186

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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     tgatgaattgtttgagaaaa 126
               ||||||||||||||||||||
Sbjct: 2126980 tgatgaattgtttgagaaaa 2126961

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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   ttggtattatgtccttgcttgctg 267
             |||||||||||| |||||||||||
Sbjct: 19586 ttggtattatgtacttgcttgctg 19609

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>gb|AC171001.2| Mus musculus BAC clone RP23-317I13 from chromosome 7, complete sequence
          Length = 183576

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aaaaaggaagatagtaaatt 22
             ||||||||||||||||||||
Sbjct: 40547 aaaaaggaagatagtaaatt 40566

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>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete
             sequence
          Length = 162090

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   tttgagaaaaagaagtctca 136
             ||||||||||||||||||||
Sbjct: 63506 tttgagaaaaagaagtctca 63525


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,702,082
Number of Sequences: 3902068
Number of extensions: 6702082
Number of successful extensions: 144303
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143820
Number of HSP's gapped (non-prelim): 478
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result