ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23c06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 696 bits (351), Expect = 0.0 Identities = 475/513 (92%), Gaps = 5/513 (0%) Strand = Plus / Plus Query: 49 tagagcaatggccgcccaggcaccggagatggaggtccccaagggtgccgagctcctgca 108 |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| || Sbjct: 28 tagagcaatggccgcccaggcaccggtgatggaggtccccaacgatgccgagctcc--ca 85 Query: 109 ggcacaggccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctg 168 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 agcacaggccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctg 145 Query: 169 cgccgtcaagctcggcatcccgacggcgatccacaacctcggcggggtctcctcgctggc 228 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | Sbjct: 146 cgccgtcaagctcggcatcccgacggcgatccacaacctcggtggcgtctcctcgctgcc 205 Query: 229 tgacctggcggccgcgctgtccatccccgcaagcaagcagccgttccttggccgcctgat 288 |||||||| || |||||||||||||| |||||||||||||||||||| ||||| || || Sbjct: 206 cgacctggcagctgcgctgtccatcccggcaagcaagcagccgttcctcggccgtcttat 265 Query: 289 gcgcgcgctggtcacctcaggcgtcttcgccaacggcggcaagaatgactctggggcaga 348 ||||||||||||||||||||||||||||||||||| || ||||| |||||| |||| || Sbjct: 266 gcgcgcgctggtcacctcaggcgtcttcgccaacg--ggaaagaacgactcttgggcgga 323 Query: 349 gctcttcggcctgaacccactgtcccgcatcctggtggacggcgtcgtcgcggacgagca 408 |||||| |||| ||||| ||||||||||||||||| || |||||||||||||| ||||| Sbjct: 324 -ctcttccgcctcaaccccctgtcccgcatcctggttgagggcgtcgtcgcggaggagca 382 Query: 409 ccacagccagacgtccttcgtgctggctgggacgtcccggcactacatggaagctgcgct 468 ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 383 ccacagccagacgtccttcgtactcgctgggacttcccggcactacatggaagctgcgct 442 Query: 469 gggcatggctgactggttcaagaaggacgccaccggaccggtgccatcggtgttcgagga 528 ||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| Sbjct: 443 ggggatggctgactggttcaagaaggacgccactggacccgtgccaacggtgttcgagga 502 Query: 529 cgtgcatagtgcgtccctcttcgacgagagcac 561 |||||| || ||||||||||||||||||||||| Sbjct: 503 cgtgcacagcgcgtccctcttcgacgagagcac 535
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 94 tgccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtc 153 ||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 63233 tgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtc 63292 Query: 154 catggggctccgctgcgccgtcaagctcggcatcccgacggcgatcca 201 |||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct: 63293 catgggcctccgctgcgccgtcgagctcggcatcccgaccacgatcca 63340 Score = 115 bits (58), Expect = 2e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 119200 ctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagccagacgtccttc 119259 Query: 428 gtgctggctgggacgtcccggcactacatggaagctgcgctgggcatggctgactggttc 487 ||||| || | |||||| ||||||||| | || || |||||||| ||| || |||||| Sbjct: 119260 gtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctggacgagtggttc 119319 Query: 488 aagaaggacg 497 | |||||||| Sbjct: 119320 aggaaggacg 119329 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 101 ctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatgggg 160 ||||| ||||| |||||| ||||||||||||||| ||| ||||||||||| ||||||| | Sbjct: 131503 ctcctacaggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcg 131444 Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||| ||||||||||||||||||||||| Sbjct: 131443 ctccggtgcgccgtcaagctcggcatccc 131415 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||| |||| | Sbjct: 118933 gagctgctgcaagcgcaggccgatctgtggcgccacagcctctactacctcacctccacg 118992 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 || |||||||||||| ||||||| |||||||| || || |||||| ||||||||| Sbjct: 118993 ggactccgctgcgccatcaagctgggcatccccaccgccatccaccgcctcggcgg 119048 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| || |||| Sbjct: 63501 ctgtcccgcatcctggttgacggcgtcgtcgccgacgagcaccatagccagaggtgcttc 63560 Query: 428 gtgctgg 434 || |||| Sbjct: 63561 gtcctgg 63567 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Plus Query: 520 gttcgaggacgtgcatagtgcgtccctcttcgacgagagcac 561 ||||||||||||||| | ||||| || |||||||||||||| Sbjct: 119352 gttcgaggacgtgcacggcgcgtcgctgttcgacgagagcac 119393 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Plus Query: 244 gctgtccatccccgcaagcaagcagccgttccttggccgcctgatgcgcg 293 ||||||| |||| || || |||||||||||||| ||||||| ||||||| Sbjct: 119079 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 119128
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Minus Query: 94 tgccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtc 153 ||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 11550555 tgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtc 11550496 Query: 154 catggggctccgctgcgccgtcaagctcggcatcccgacggcgatcca 201 |||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct: 11550495 catgggcctccgctgcgccgtcgagctcggcatcccgaccacgatcca 11550448 Score = 115 bits (58), Expect = 2e-22 Identities = 112/130 (86%) Strand = Plus / Minus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 11494588 ctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagccagacgtccttc 11494529 Query: 428 gtgctggctgggacgtcccggcactacatggaagctgcgctgggcatggctgactggttc 487 ||||| || | |||||| ||||||||| | || || |||||||| ||| || |||||| Sbjct: 11494528 gtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctggacgagtggttc 11494469 Query: 488 aagaaggacg 497 | |||||||| Sbjct: 11494468 aggaaggacg 11494459 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 101 ctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatgggg 160 ||||| ||||| |||||| ||||||||||||||| ||| ||||||||||| ||||||| | Sbjct: 11482285 ctcctacaggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcg 11482344 Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||| ||||||||||||||||||||||| Sbjct: 11482345 ctccggtgcgccgtcaagctcggcatccc 11482373 Score = 111 bits (56), Expect = 3e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| |||||||||||||| |||||||||| | | | |||||||||| ||||| Sbjct: 7139001 gagctgctgcaagcacaggccgacctatggcgccacagcttctcctacctcacggccatg 7138942 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 | |||||||||||||| ||||||||||||||| || || |||||| ||||||||| Sbjct: 7138941 gcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgcctcggcgg 7138886 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Minus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||| |||| | Sbjct: 11494855 gagctgctgcaagcgcaggccgatctgtggcgccacagcctctactacctcacctccacg 11494796 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 || |||||||||||| ||||||| |||||||| || || |||||| ||||||||| Sbjct: 11494795 ggactccgctgcgccatcaagctgggcatccccaccgccatccaccgcctcggcgg 11494740 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Minus Query: 97 cgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccat 156 |||||| ||||| || |||||||||||||||||||||| ||| |||| | |||||||||| Sbjct: 11331656 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11331597 Query: 157 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 202 || | ||| ||||||||||||||||||||||| || || |||||| Sbjct: 11331596 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccac 11331551 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| || |||| Sbjct: 11550287 ctgtcccgcatcctggttgacggcgtcgtcgccgacgagcaccatagccagaggtgcttc 11550228 Query: 428 gtgctgg 434 || |||| Sbjct: 11550227 gtcctgg 11550221 Score = 79.8 bits (40), Expect = 9e-12 Identities = 118/144 (81%) Strand = Plus / Minus Query: 113 caggccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctgcgcc 172 |||||||| ||||||||||||||||| | ||||||||| |||||| ||||| |||||| Sbjct: 11303032 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11302973 Query: 173 gtcaagctcggcatcccgacggcgatccacaacctcggcggggtctcctcgctggctgac 232 ||| | ||||||||||| || || |||||| || |||||| | | |||||||| | ||| Sbjct: 11302972 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11302913 Query: 233 ctggcggccgcgctgtccatcccc 256 || | ||||||||||| ||||| Sbjct: 11302912 ctcgtcaccgcgctgtccctcccc 11302889 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 97 cgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccat 156 |||||| ||||| || ||||||||| ||| |||||||| ||| |||| | |||||||||| Sbjct: 11355304 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11355245 Query: 157 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 202 || | | | ||||||||||||||||||||||| || || |||||| Sbjct: 11355244 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccac 11355199 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Minus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtc 153 ||||| ||||| ||||||||||| || |||||||||| ||| | |||| ||||||| Sbjct: 11439601 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtc 11439546 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Minus Query: 244 gctgtccatccccgcaagcaagcagccgttccttggccgcctgatgcgcg 293 ||||||| |||| || || |||||||||||||| ||||||| ||||||| Sbjct: 11494709 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11494660 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 gttcgaggacgtgcatagtgcgtccctcttcgacgagagcac 561 ||||||||||||||| | ||||| || |||||||||||||| Sbjct: 11494436 gttcgaggacgtgcacggcgcgtcgctgttcgacgagagcac 11494395 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 368 ctgtcccgcatcctggtggacggcgtcg 395 |||||||||||||| || |||||||||| Sbjct: 7138731 ctgtcccgcatcctcgtcgacggcgtcg 7138704
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Minus Query: 94 tgccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtc 153 ||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 11629744 tgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtc 11629685 Query: 154 catggggctccgctgcgccgtcaagctcggcatcccgacggcgatcca 201 |||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct: 11629684 catgggcctccgctgcgccgtcgagctcggcatcccgaccacgatcca 11629637 Score = 115 bits (58), Expect = 2e-22 Identities = 112/130 (86%) Strand = Plus / Minus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 11573777 ctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagccagacgtccttc 11573718 Query: 428 gtgctggctgggacgtcccggcactacatggaagctgcgctgggcatggctgactggttc 487 ||||| || | |||||| ||||||||| | || || |||||||| ||| || |||||| Sbjct: 11573717 gtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctggacgagtggttc 11573658 Query: 488 aagaaggacg 497 | |||||||| Sbjct: 11573657 aggaaggacg 11573648 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 101 ctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatgggg 160 ||||| ||||| |||||| ||||||||||||||| ||| ||||||||||| ||||||| | Sbjct: 11561474 ctcctacaggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcg 11561533 Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||| ||||||||||||||||||||||| Sbjct: 11561534 ctccggtgcgccgtcaagctcggcatccc 11561562 Score = 111 bits (56), Expect = 3e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| |||||||||||||| |||||||||| | | | |||||||||| ||||| Sbjct: 7204972 gagctgctgcaagcacaggccgacctatggcgccacagcttctcctacctcacggccatg 7204913 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 | |||||||||||||| ||||||||||||||| || || |||||| ||||||||| Sbjct: 7204912 gcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgcctcggcgg 7204857 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Minus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||| |||| | Sbjct: 11574044 gagctgctgcaagcgcaggccgatctgtggcgccacagcctctactacctcacctccacg 11573985 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 || |||||||||||| ||||||| |||||||| || || |||||| ||||||||| Sbjct: 11573984 ggactccgctgcgccatcaagctgggcatccccaccgccatccaccgcctcggcgg 11573929 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Minus Query: 97 cgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccat 156 |||||| ||||| || |||||||||||||||||||||| ||| |||| | |||||||||| Sbjct: 11410845 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11410786 Query: 157 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 202 || | ||| ||||||||||||||||||||||| || || |||||| Sbjct: 11410785 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccac 11410740 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| || |||| Sbjct: 11629476 ctgtcccgcatcctggttgacggcgtcgtcgccgacgagcaccatagccagaggtgcttc 11629417 Query: 428 gtgctgg 434 || |||| Sbjct: 11629416 gtcctgg 11629410 Score = 79.8 bits (40), Expect = 9e-12 Identities = 118/144 (81%) Strand = Plus / Minus Query: 113 caggccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctgcgcc 172 |||||||| ||||||||||||||||| | ||||||||| |||||| ||||| |||||| Sbjct: 11382221 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11382162 Query: 173 gtcaagctcggcatcccgacggcgatccacaacctcggcggggtctcctcgctggctgac 232 ||| | ||||||||||| || || |||||| || |||||| | | |||||||| | ||| Sbjct: 11382161 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11382102 Query: 233 ctggcggccgcgctgtccatcccc 256 || | ||||||||||| ||||| Sbjct: 11382101 ctcgtcaccgcgctgtccctcccc 11382078 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 97 cgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccat 156 |||||| ||||| || ||||||||| ||| |||||||| ||| |||| | |||||||||| Sbjct: 11434493 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11434434 Query: 157 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 202 || | | | ||||||||||||||||||||||| || || |||||| Sbjct: 11434433 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccac 11434388 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Minus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtc 153 ||||| ||||| ||||||||||| || |||||||||| ||| | |||| ||||||| Sbjct: 11518790 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtc 11518735 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Minus Query: 244 gctgtccatccccgcaagcaagcagccgttccttggccgcctgatgcgcg 293 ||||||| |||| || || |||||||||||||| ||||||| ||||||| Sbjct: 11573898 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11573849 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 gttcgaggacgtgcatagtgcgtccctcttcgacgagagcac 561 ||||||||||||||| | ||||| || |||||||||||||| Sbjct: 11573625 gttcgaggacgtgcacggcgcgtcgctgttcgacgagagcac 11573584 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 368 ctgtcccgcatcctggtggacggcgtcg 395 |||||||||||||| || |||||||||| Sbjct: 7204702 ctgtcccgcatcctcgtcgacggcgtcg 7204675
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 115 bits (58), Expect = 2e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 4949 ctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagccagacgtccttc 5008 Query: 428 gtgctggctgggacgtcccggcactacatggaagctgcgctgggcatggctgactggttc 487 ||||| || | |||||| ||||||||| | || || |||||||| ||| || |||||| Sbjct: 5009 gtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctggacgagtggttc 5068 Query: 488 aagaaggacg 497 | |||||||| Sbjct: 5069 aggaaggacg 5078 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 101 ctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatgggg 160 ||||| ||||| |||||| ||||||||||||||| ||| ||||||||||| ||||||| | Sbjct: 17252 ctcctacaggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcg 17193 Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||| ||||||||||||||||||||||| Sbjct: 17192 ctccggtgcgccgtcaagctcggcatccc 17164 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||| |||| | Sbjct: 4682 gagctgctgcaagcgcaggccgatctgtggcgccacagcctctactacctcacctccacg 4741 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 || |||||||||||| ||||||| |||||||| || || |||||| ||||||||| Sbjct: 4742 ggactccgctgcgccatcaagctgggcatccccaccgccatccaccgcctcggcgg 4797 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Plus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtc 153 ||||| ||||| ||||||||||| || |||||||||| ||| | |||| ||||||| Sbjct: 59936 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtc 59991 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Plus Query: 520 gttcgaggacgtgcatagtgcgtccctcttcgacgagagcac 561 ||||||||||||||| | ||||| || |||||||||||||| Sbjct: 5101 gttcgaggacgtgcacggcgcgtcgctgttcgacgagagcac 5142 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Plus Query: 244 gctgtccatccccgcaagcaagcagccgttccttggccgcctgatgcgcg 293 ||||||| |||| || || |||||||||||||| ||||||| ||||||| Sbjct: 4828 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 4877
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 115 bits (58), Expect = 2e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 360 ctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagccagacgtccttc 419 Query: 428 gtgctggctgggacgtcccggcactacatggaagctgcgctgggcatggctgactggttc 487 ||||| || | |||||| ||||||||| | || || |||||||| ||| || |||||| Sbjct: 420 gtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctggacgagtggttc 479 Query: 488 aagaaggacg 497 | |||||||| Sbjct: 480 aggaaggacg 489 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||| |||| | Sbjct: 93 gagctgctgcaagcgcaggccgatctgtggcgccacagcctctactacctcacctccacg 152 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 || |||||||||||| ||||||| |||||||| || || |||||| ||||||||| Sbjct: 153 ggactccgctgcgccatcaagctgggcatccccaccgccatccaccgcctcggcgg 208 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Plus Query: 520 gttcgaggacgtgcatagtgcgtccctcttcgacgagagcac 561 ||||||||||||||| | ||||| || |||||||||||||| Sbjct: 512 gttcgaggacgtgcacggcgcgtcgctgttcgacgagagcac 553 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Plus Query: 244 gctgtccatccccgcaagcaagcagccgttccttggccgcctgatgcgcg 293 ||||||| |||| || || |||||||||||||| ||||||| ||||||| Sbjct: 239 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 288
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 115 bits (58), Expect = 2e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 368 ctgtcccgcatcctggtggacggcgtcgtcgcggacgagcaccacagccagacgtccttc 427 |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 365 ctgtcccgcatcctcgtcgatggcgtcgtcgccgacgagcaccacagccagacgtccttc 424 Query: 428 gtgctggctgggacgtcccggcactacatggaagctgcgctgggcatggctgactggttc 487 ||||| || | |||||| ||||||||| | || || |||||||| ||| || |||||| Sbjct: 425 gtgctcgccgcgacgtcgcggcactacctcgaggcggcgctggggctggacgagtggttc 484 Query: 488 aagaaggacg 497 | |||||||| Sbjct: 485 aggaaggacg 494 Score = 103 bits (52), Expect = 6e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||| |||| | Sbjct: 98 gagctgctgcaagcgcaggccgatctgtggcgccacagcctctactacctcacctccacg 157 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 || |||||||||||| ||||||| |||||||| || || |||||| ||||||||| Sbjct: 158 ggactccgctgcgccatcaagctgggcatccccaccgccatccaccgcctcggcgg 213 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Plus Query: 520 gttcgaggacgtgcatagtgcgtccctcttcgacgagagcac 561 ||||||||||||||| | ||||| || |||||||||||||| Sbjct: 517 gttcgaggacgtgcacggcgcgtcgctgttcgacgagagcac 558 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Plus Query: 244 gctgtccatccccgcaagcaagcagccgttccttggccgcctgatgcgcg 293 ||||||| |||| || || |||||||||||||| ||||||| ||||||| Sbjct: 244 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 293
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 113 bits (57), Expect = 6e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 101 ctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatgggg 160 ||||| ||||| |||||| ||||||||||||||| ||| ||||||||||| ||||||| | Sbjct: 112 ctcctacaggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcg 171 Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||| ||||||||||||||||||||||| Sbjct: 172 ctccggtgcgccgtcaagctcggcatccc 200
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 111 bits (56), Expect = 3e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| |||||||||||||| |||||||||| | | | |||||||||| ||||| Sbjct: 43554 gagctgctgcaagcacaggccgacctatggcgccacagcttctcctacctcacggccatg 43613 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 | |||||||||||||| ||||||||||||||| || || |||||| ||||||||| Sbjct: 43614 gcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgcctcggcgg 43669 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 368 ctgtcccgcatcctggtggacggcgtcg 395 |||||||||||||| || |||||||||| Sbjct: 43824 ctgtcccgcatcctcgtcgacggcgtcg 43851
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 111 bits (56), Expect = 3e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 98 gagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccatg 157 ||||| ||||| |||||||||||||| |||||||||| | | | |||||||||| ||||| Sbjct: 52221 gagctgctgcaagcacaggccgacctatggcgccacagcttctcctacctcacggccatg 52162 Query: 158 gggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcgg 213 | |||||||||||||| ||||||||||||||| || || |||||| ||||||||| Sbjct: 52161 gcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgcctcggcgg 52106 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 368 ctgtcccgcatcctggtggacggcgtcg 395 |||||||||||||| || |||||||||| Sbjct: 51951 ctgtcccgcatcctcgtcgacggcgtcg 51924
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 105 bits (53), Expect = 2e-19 Identities = 184/225 (81%), Gaps = 2/225 (0%) Strand = Plus / Plus Query: 95 gccgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtcc 154 |||||||| |||||||| |||||||||||||||||||||| ||| |||||||| || ||| Sbjct: 72 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 131 Query: 155 atggggctccgctgcgccgtcaagctcggcatcccgacggcgatccacaacctcggcggg 214 |||| |||| ||||| || ||||| ||||||||| || ||||||||||| ||| || Sbjct: 132 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc-gg 190 Query: 215 gtct-cctcgctggctgacctggcggccgcgctgtccatccccgcaagcaagcagccgtt 273 |||| || ||||| | ||||| | ||||||||||||| | || || ||||| ||||| Sbjct: 191 gtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgtt 250 Query: 274 ccttggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 318 ||| || ||| ||||||| ||||||||| || ||||||||||| Sbjct: 251 cctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 295
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Minus Query: 97 cgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccat 156 |||||| ||||| || |||||||||||||||||||||| ||| |||| | |||||||||| Sbjct: 118014 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 117955 Query: 157 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 202 || | ||| ||||||||||||||||||||||| || || |||||| Sbjct: 117954 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccac 117909 Score = 79.8 bits (40), Expect = 9e-12 Identities = 118/144 (81%) Strand = Plus / Minus Query: 113 caggccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctgcgcc 172 |||||||| ||||||||||||||||| | ||||||||| |||||| ||||| |||||| Sbjct: 89390 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 89331 Query: 173 gtcaagctcggcatcccgacggcgatccacaacctcggcggggtctcctcgctggctgac 232 ||| | ||||||||||| || || |||||| || |||||| | | |||||||| | ||| Sbjct: 89330 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 89271 Query: 233 ctggcggccgcgctgtccatcccc 256 || | ||||||||||| ||||| Sbjct: 89270 ctcgtcaccgcgctgtccctcccc 89247 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 97 cgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccat 156 |||||| ||||| || ||||||||| ||| |||||||| ||| |||| | |||||||||| Sbjct: 141662 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 141603 Query: 157 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 202 || | | | ||||||||||||||||||||||| || || |||||| Sbjct: 141602 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccac 141557
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 97 cgagctcctgcaggcacaggccgacctgtggcgccacaccctttactacctcacgtccat 156 |||||| ||||| || |||||||||||||||||||||| ||| |||| | |||||||||| Sbjct: 91 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 150 Query: 157 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 202 || | ||| ||||||||||||||||||||||| || || |||||| Sbjct: 151 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccac 196
>ref|NM_191262.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1137 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||||||||||||| ||||||||||||| Sbjct: 100 ctccgctgcgccgtcgagctcggcatccc 128
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||||||||||||| ||||||||||||| Sbjct: 31604095 ctccgctgcgccgtcgagctcggcatccc 31604123
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||||||||||||| ||||||||||||| Sbjct: 17827 ctccgctgcgccgtcgagctcggcatccc 17855
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 161 ctccgctgcgccgtcaagctcggcatccc 189 ||||||||||||||| ||||||||||||| Sbjct: 117118 ctccgctgcgccgtcgagctcggcatccc 117146
>ref|NM_187649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2874 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 383 gtggacggcgtcgtcgcggacg 404 |||||||||||||||||||||| Sbjct: 312 gtggacggcgtcgtcgcggacg 333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 383 gtggacggcgtcgtcgcggacg 404 |||||||||||||||||||||| Sbjct: 431057 gtggacggcgtcgtcgcggacg 431078
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 383 gtggacggcgtcgtcgcggacg 404 |||||||||||||||||||||| Sbjct: 431055 gtggacggcgtcgtcgcggacg 431076
>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03, complete sequence Length = 116214 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 383 gtggacggcgtcgtcgcggacg 404 |||||||||||||||||||||| Sbjct: 29517 gtggacggcgtcgtcgcggacg 29538
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 cggcgtcgtcgcggacgagca 408 ||||||||||||||||||||| Sbjct: 728957 cggcgtcgtcgcggacgagca 728977
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 gtcttcgccaacggcggcaag 331 ||||||||||||||||||||| Sbjct: 2577043 gtcttcgccaacggcggcaag 2577023
>gb|AY062000.1| Euglena sp. BAPS 2-2000 small subunit ribosomal RNA gene, partial sequence Length = 2299 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 gcatggctgactggttcaag 490 |||||||||||||||||||| Sbjct: 196 gcatggctgactggttcaag 177
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ctcctgcaggcacaggccga 120 |||||||||||||||||||| Sbjct: 491382 ctcctgcaggcacaggccga 491363
>ref|XM_478005.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 202 atgcgcgtgctggtcgcctcgggcgtcttcgc 233
>ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 205 atgcgcgtgctggtcgcctcgggcgtcttcgc 236
>ref|NM_016307.3| Homo sapiens paired related homeobox 2 (PRRX2), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ggcggccgcgctgtccatccccgc 258 |||||||||||||||||| ||||| Sbjct: 245 ggcggccgcgctgtccatgcccgc 222
>gb|BC014645.1| Homo sapiens paired related homeobox 2, mRNA (cDNA clone MGC:19843 IMAGE:4553935), complete cds Length = 1327 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ggcggccgcgctgtccatccccgc 258 |||||||||||||||||| ||||| Sbjct: 245 ggcggccgcgctgtccatgcccgc 222
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ggcgatccacaacctcggcg 212 |||||||||||||||||||| Sbjct: 1672630 ggcgatccacaacctcggcg 1672611
>ref|XM_547101.2| PREDICTED: Canis familiaris similar to dynein, axonemal, heavy polypeptide 3 (LOC489981), mRNA Length = 12444 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cctggcggccgcgctgtcca 251 |||||||||||||||||||| Sbjct: 18 cctggcggccgcgctgtcca 37
>gb|AF494422.1| Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF1-like protein mRNA, complete cds Length = 717 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 ggtggacggcgtcgtcgcggacga 405 ||||||||||||||||| |||||| Sbjct: 498 ggtggacggcgtcgtcgaggacga 475
>gb|AY345233.1| Oryza sativa transcription factor RCBF3 mRNA, complete cds Length = 850 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 ggtggacggcgtcgtcgcggacga 405 ||||||||||||||||| |||||| Sbjct: 560 ggtggacggcgtcgtcgaggacga 537
>emb|AL590369.18| Human DNA sequence from clone RP11-483H20 on chromosome 9 Contains the 5' end of a novel gene (FLJ35803), the 3' end of the gene for AD-003 protein (AD-003), the ASB6 gene for ankyrin repeat and SOCS box-containing 6 (FLJ20548), two novel genes, the gene for paired related homeobox protein (PRX2) (PMX2, PRRX2), the 3' end of the PTGES gene for prostaglandin E synthase (PGES, PIG12, MGST-IV, MGST1L1, TP53I12, MGST1-L1) and six CpG islands, complete sequence Length = 125756 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ggcggccgcgctgtccatccccgc 258 |||||||||||||||||| ||||| Sbjct: 50300 ggcggccgcgctgtccatgcccgc 50277
>emb|X15060.1|SGPHR Streptomyces griseus phr gene for photolyase (EC 4.1.99.3) Length = 2589 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 ggtggacggcgtcgtcgcggacga 405 |||||||||||||||| ||||||| Sbjct: 1215 ggtggacggcgtcgtcccggacga 1192
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 cgttccttggccgcctgatgcgcg 293 ||||||| |||||||||||||||| Sbjct: 108241 cgttcctgggccgcctgatgcgcg 108264
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ccactgtcccgcatcctggt 384 |||||||||||||||||||| Sbjct: 459216 ccactgtcccgcatcctggt 459197
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 acctggcggccgcgctgtcc 250 |||||||||||||||||||| Sbjct: 1760549 acctggcggccgcgctgtcc 1760568
>gb|DP000050.1| Felis catus target 126 genomic scaffold Length = 269350 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ggaagctgcgctgggcatgg 476 |||||||||||||||||||| Sbjct: 103061 ggaagctgcgctgggcatgg 103080
>gb|AF283309.1|AF283309 Euglena gracilis 18S small subunit ribosomal RNA gene, partial sequence Length = 2241 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 gcatggctgactggttcaag 490 |||||||||||||||||||| Sbjct: 168 gcatggctgactggttcaag 149
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgtcttcgccaacggcgg 327 |||||||||||||||||||| Sbjct: 218456 ggcgtcttcgccaacggcgg 218437
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ggtggacggcgtcgtcgcggacga 405 ||||||||||||||||| |||||| Sbjct: 20103263 ggtggacggcgtcgtcgaggacga 20103286
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 16295699 atgcgcgtgctggtcgcctcgggcgtcttcgc 16295668 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 16265053 atgcgcgtgctggtcgcctcgggcgtcttcgc 16265022 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 16219664 atgcgcgtgctggtcgcctcgggcgtcttcgc 16219695
>gb|AF061970.1|AF061970 Homo sapiens paired related homeobox protein (PRX2) mRNA, complete cds Length = 1110 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ggcggccgcgctgtccatccccgc 258 |||||||||||||||||| ||||| Sbjct: 48 ggcggccgcgctgtccatgcccgc 25
>gb|AF300970.1| Oryza sativa DRE-binding protein 1A mRNA, complete cds Length = 895 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 ggtggacggcgtcgtcgcggacga 405 ||||||||||||||||| |||||| Sbjct: 564 ggtggacggcgtcgtcgaggacga 541
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggccgcccaggcaccggag 76 |||||||||||||||||||| Sbjct: 5490093 tggccgcccaggcaccggag 5490074
>dbj|AP006859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05 Length = 41326 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ggtggacggcgtcgtcgcggacga 405 ||||||||||||||||| |||||| Sbjct: 38189 ggtggacggcgtcgtcgaggacga 38212
>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0473C09 Length = 141066 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 1755 atgcgcgtgctggtcgcctcgggcgtcttcgc 1724
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 116137 atgcgcgtgctggtcgcctcgggcgtcttcgc 116106 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 85491 atgcgcgtgctggtcgcctcgggcgtcttcgc 85460 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 287 atgcgcgcgctggtcacctcaggcgtcttcgc 318 ||||||| ||||||| |||| ||||||||||| Sbjct: 40102 atgcgcgtgctggtcgcctcgggcgtcttcgc 40133
>dbj|AK105599.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A04, full insert sequence Length = 955 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 ggtggacggcgtcgtcgcggacga 405 ||||||||||||||||| |||||| Sbjct: 612 ggtggacggcgtcgtcgaggacga 589
>dbj|AK071519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099L23, full insert sequence Length = 909 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 ggtggacggcgtcgtcgcggacga 405 ||||||||||||||||| |||||| Sbjct: 578 ggtggacggcgtcgtcgaggacga 555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,245,605 Number of Sequences: 3902068 Number of extensions: 3245605 Number of successful extensions: 58095 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57145 Number of HSP's gapped (non-prelim): 943 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
