>MRAY_THIDN (Q30Q39) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 353

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 41  FDFLAFKNDIQFWNKNKSMEGLSAKSVVL---NFICQLIIFLYLLDN 172
           F  + FK+DI    KN+++ GL AK+ ++    F   + IFLY L +
Sbjct: 103 FSIIGFKDDIAKIKKNENLAGLKAKTKLILQTTFALIISIFLYTLSD 149

>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 17/144 (11%)
 Frame = +2

Query: 50   LAFKNDIQFWNKNKSMEGLSAKSVVLNF-----------------ICQLIIFLYLLDNDT 178
            L+F N    WN     E    K+ +LNF                 I  L+IF++L     
Sbjct: 1143 LSFHNFKLKWNLRFFNEINYKKNYLLNFLWSDFNLINNCNNLYWVIFSLVIFIFLYYQKI 1202

Query: 179  SWMILASSGVGVCIEFWKIGKAMHVEIDRSGKIPMLRFRDRESYAQNKTKEYDALAMKYL 358
              +I+ S     C   WK  + +    DRS  +   +   R   A NKT+      + Y 
Sbjct: 1203 FSIIIGSD----CFHLWKNFEIIQYLTDRSRSLYFTKLTRRNKTALNKTEN----LLSYF 1254

Query: 359  TYVLLFLMAGFAIYSLKYEKHKSW 430
               L   +     Y L  +  K W
Sbjct: 1255 FQNLTHYITNIKFYLLTKKNLKKW 1278

>RBN_CHLTE (Q8KCT5) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)|
          Length = 422

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +2

Query: 380 MAGFAIYSLKYEKHKSWYSWILSSLTSCVYMFGFIMMCPQLF 505
           +AG  + ++ +E  K W+++ +SS  +  +++G + + P LF
Sbjct: 215 LAGGVLAAVLFELAKRWFTFYVSSFATFEHIYGALSVVPMLF 256

>RFBX_YERPS (Q05347) Putative O-antigen export protein|
          Length = 437

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 350 KYLTYVLLFLMAGFAIYSLKYEKHKSWYSWILSSLTSCVYMFGFIMMCP 496
           K  +++ L    G   Y + + +HK W S I+ +L+S V +  F+M  P
Sbjct: 128 KVASFIFLTTSIGNLAYKIWFSEHKGWVSNIIPALSSIVGLV-FLMRLP 175

>PPID_BUCBP (Q89A98) Putative peptidyl-prolyl cis-trans isomerase D (EC|
           5.2.1.8) (PPIase D) (Rotamase D)
          Length = 511

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 591 NRSSIIVLRNL*VICLHGI*ATDFSL*LINNCGHIIIKPNM*TQLVREESIHEYQLLCF 415
           ++ S ++L  L +I    +  T+F+  L+ N     IK N  T++ REE I  Y L CF
Sbjct: 6   SKLSNLILLLLIIIIFISLILTNFNNYLLENLSEYEIKINN-TEISREEFIQRYNLECF 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,754,889
Number of Sequences: 219361
Number of extensions: 1725637
Number of successful extensions: 5490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5490
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)