ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22m20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 102 catcaggagttttggagttggacagcttaattgcaagagttgaagcactccgggttgtga 161 ||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||| | Sbjct: 3250990 catcaggagctttgaagttgcgaagcttaattgcaagagttgaagcactccatgttgtaa 3251049 Query: 162 tattggatgtcaaggaccgccaagataaggagtttactgaattcgctgctaaattggagt 221 || |||||| ||| | ||||| |||||||||||||||||||| | |||| || |||| Sbjct: 3251050 tactggatgccaaaggccgccgagataaggagtttactgaatctgttgctcaactggaag 3251109 Query: 222 cagcgaatctggaaattcaagatcttaaatcaagaaaaggctc 264 | || ||| ||||||||||||| |||||| ||||||||||||| Sbjct: 3251110 cggcaaatatggaaattcaagagcttaaagcaagaaaaggctc 3251152 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 293 gaggatgataggcaaaaatatgacgctgacaactctaaagggaagcaagcacagatcatg 352 ||||||||||||||||| ||||| ||||| ||||| |||||||| || | |||||||||| Sbjct: 3251175 gaggatgataggcaaaagtatgatgctgataactccaaagggaaacatgtacagatcatg 3251234 Query: 353 aaagatatcgaacttgatca 372 ||||| |||||||||||||| Sbjct: 3251235 aaagacatcgaacttgatca 3251254
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 102 catcaggagttttggagttggacagcttaattgcaagagttgaagcactccgggttgtga 161 ||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||| | Sbjct: 3251101 catcaggagctttgaagttgcgaagcttaattgcaagagttgaagcactccatgttgtaa 3251160 Query: 162 tattggatgtcaaggaccgccaagataaggagtttactgaattcgctgctaaattggagt 221 || |||||| ||| | ||||| |||||||||||||||||||| | |||| || |||| Sbjct: 3251161 tactggatgccaaaggccgccgagataaggagtttactgaatctgttgctcaactggaag 3251220 Query: 222 cagcgaatctggaaattcaagatcttaaatcaagaaaaggctc 264 | || ||| ||||||||||||| |||||| ||||||||||||| Sbjct: 3251221 cggcaaatatggaaattcaagagcttaaagcaagaaaaggctc 3251263 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 293 gaggatgataggcaaaaatatgacgctgacaactctaaagggaagcaagcacagatcatg 352 ||||||||||||||||| ||||| ||||| ||||| |||||||| || | |||||||||| Sbjct: 3251286 gaggatgataggcaaaagtatgatgctgataactccaaagggaaacatgtacagatcatg 3251345 Query: 353 aaagatatcgaacttgatca 372 ||||| |||||||||||||| Sbjct: 3251346 aaagacatcgaacttgatca 3251365
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 102 catcaggagttttggagttggacagcttaattgcaagagttgaagcactccgggttgtga 161 ||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||| | Sbjct: 75863 catcaggagctttgaagttgcgaagcttaattgcaagagttgaagcactccatgttgtaa 75922 Query: 162 tattggatgtcaaggaccgccaagataaggagtttactgaattcgctgctaaattggagt 221 || |||||| ||| | ||||| |||||||||||||||||||| | |||| || |||| Sbjct: 75923 tactggatgccaaaggccgccgagataaggagtttactgaatctgttgctcaactggaag 75982 Query: 222 cagcgaatctggaaattcaagatcttaaatcaagaaaaggctc 264 | || ||| ||||||||||||| |||||| ||||||||||||| Sbjct: 75983 cggcaaatatggaaattcaagagcttaaagcaagaaaaggctc 76025 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 293 gaggatgataggcaaaaatatgacgctgacaactctaaagggaagcaagcacagatcatg 352 ||||||||||||||||| ||||| ||||| ||||| |||||||| || | |||||||||| Sbjct: 76048 gaggatgataggcaaaagtatgatgctgataactccaaagggaaacatgtacagatcatg 76107 Query: 353 aaagatatcgaacttgatca 372 ||||| |||||||||||||| Sbjct: 76108 aaagacatcgaacttgatca 76127
>ref|NM_196546.1| Oryza sativa (japonica cultivar-group) putative centromere protein (OSJNBa0075H14.2), mRNA Length = 6102 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 329 aaagggaagcaagcacagatcatgaaagatatcgaacttgatca 372 ||||||||||| | |||||| ||||| ||||||||||||||||| Sbjct: 5254 aaagggaagcaggtacagatgatgaaggatatcgaacttgatca 5297
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 329 aaagggaagcaagcacagatcatgaaagatatcgaacttgatca 372 ||||||||||| | |||||| ||||| ||||||||||||||||| Sbjct: 14391246 aaagggaagcaggtacagatgatgaaggatatcgaacttgatca 14391203
>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14, complete sequence Length = 155420 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 329 aaagggaagcaagcacagatcatgaaagatatcgaacttgatca 372 ||||||||||| | |||||| ||||| ||||||||||||||||| Sbjct: 5609 aaagggaagcaggtacagatgatgaaggatatcgaacttgatca 5566
>dbj|AK063303.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F05, full insert sequence Length = 1623 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 329 aaagggaagcaagcacagatcatgaaagatatcgaacttgatca 372 ||||||||||| | |||||| ||||| ||||||||||||||||| Sbjct: 415 aaagggaagcaggtacagatgatgaaggatatcgaacttgatca 458
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 329 aaagggaagcaagcacagatcatgaaagatatcgaacttgatca 372 ||||||||||| | |||||| ||||| ||||||||||||||||| Sbjct: 14399488 aaagggaagcaggtacagatgatgaaggatatcgaacttgatca 14399445
>gb|U53338.1| Caenorhabditis elegans cosmid C05E11, complete sequence Length = 37799 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 32 ctttcagataaaaaagtcaattt 54 ||||||||||||||||||||||| Sbjct: 26784 ctttcagataaaaaagtcaattt 26806
>gb|BT017178.1| Zea mays clone EL01N0369C02.c mRNA sequence Length = 1624 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 329 aaagggaagcaagcacagatcatgaaagatat 360 ||||||||||||| ||||||||||| ||||| Sbjct: 515 aaagggaagcaagtccagatcatgaaggatat 546
>ref|XM_594034.2| PREDICTED: Bos taurus similar to Gamma-taxilin (Lipopolysaccharide specific response protein 5), transcript variant 1 (LOC515927), mRNA Length = 2195 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 gaagcaagcacagatcatgaaaga 357 ||||||||| |||||||||||||| Sbjct: 554 gaagcaagcccagatcatgaaaga 577
>ref|XM_865719.1| PREDICTED: Bos taurus similar to Gamma-taxilin (Lipopolysaccharide specific response protein 5), transcript variant 3 (LOC515927), mRNA Length = 2100 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 gaagcaagcacagatcatgaaaga 357 ||||||||| |||||||||||||| Sbjct: 558 gaagcaagcccagatcatgaaaga 581
>gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, complete sequence Length = 220622 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 aaagggaagcaagcacagat 348 |||||||||||||||||||| Sbjct: 180096 aaagggaagcaagcacagat 180115
>gb|AC123933.4| Mus musculus BAC clone RP23-339F7 from chromosome 2, complete sequence Length = 201267 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccatttactttcagataaaa 44 |||||||||||||||||||| Sbjct: 40564 ccatttactttcagataaaa 40583
>gb|AC116582.3| Mus musculus BAC clone RP23-340C13 from 9, complete sequence Length = 214625 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 aaagggaagcaagcacagat 348 |||||||||||||||||||| Sbjct: 203970 aaagggaagcaagcacagat 203951
>emb|BX544884.8| Zebrafish DNA sequence from clone DKEY-227M3 in linkage group 8, complete sequence Length = 160755 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 atttactttcagataaaaaa 46 |||||||||||||||||||| Sbjct: 140171 atttactttcagataaaaaa 140190
>gb|AC104961.7| Homo sapiens chromosome 18, clone RP11-958F21, complete sequence Length = 184371 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 agatcttaaatcaagaaaag 260 |||||||||||||||||||| Sbjct: 18421 agatcttaaatcaagaaaag 18440
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aagtcaatttggagcttgta 64 |||||||||||||||||||| Sbjct: 35850649 aagtcaatttggagcttgta 35850630
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aagtcaatttggagcttgta 64 |||||||||||||||||||| Sbjct: 115107 aagtcaatttggagcttgta 115088
>gb|AY104134.1| Zea mays PCO141944 mRNA sequence Length = 1041 Score = 40.1 bits (20), Expect = 5.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 329 aaagggaagcaagcacagatcatgaaagatat 360 ||||||||||||| ||||||||||| ||||| Sbjct: 109 aaagggaagcaagtccagatcatgaaggatat 140
>emb|CR847961.12| Zebrafish DNA sequence from clone DKEY-154B7 in linkage group 5, complete sequence Length = 237051 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tcagataaaaaagtcaattt 54 |||||||||||||||||||| Sbjct: 53689 tcagataaaaaagtcaattt 53670
>emb|AL928991.9| Mouse DNA sequence from clone RP23-455F5 on chromosome 2, complete sequence Length = 149871 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ccatttactttcagataaaa 44 |||||||||||||||||||| Sbjct: 130775 ccatttactttcagataaaa 130756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,331,461 Number of Sequences: 3902068 Number of extensions: 3331461 Number of successful extensions: 63300 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63194 Number of HSP's gapped (non-prelim): 103 length of query: 374 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 352 effective length of database: 17,147,199,772 effective search space: 6035814319744 effective search space used: 6035814319744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
