ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags23b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EDNRB_RABIT (Q9N0W7) Endothelin B receptor precursor (ET-B) (End... 33 1.0
2HMEN_DROME (P02836) Segmentation polarity homeobox protein engra... 32 1.8
3STK36_PONPY (Q5RAJ5) Serine/threonine-protein kinase 36 (EC 2.7.... 30 8.9
4STK36_HUMAN (Q9NRP7) Serine/threonine-protein kinase 36 (EC 2.7.... 30 8.9
5THIO_CHLPN (Q9Z7P5) Thioredoxin (TRX) 30 8.9

>EDNRB_RABIT (Q9N0W7) Endothelin B receptor precursor (ET-B) (Endothelin|
           receptor Non-selective type)
          Length = 441

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +1

Query: 112 STPLPAHATALKKMTTPAASTLRARRGMGELS-----CKIPKQSGVTAAAPRRQPIPCLS 276
           S P         ++ TP+  T   R     L       +IPK+ G TA APRR P PC  
Sbjct: 33  SAPATPPLLGASEILTPSTKTSWPRDSNASLPRSSAPAEIPKE-GRTAGAPRRTPPPCQR 91

Query: 277 PVVLRLR*SSFSFLN 321
           P  ++    +F ++N
Sbjct: 92  PTEIK---DTFKYIN 103



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>HMEN_DROME (P02836) Segmentation polarity homeobox protein engrailed|
          Length = 552

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
 Frame = +1

Query: 70  VSRPVASKACSFLGSTPLPAHATALKKMTTPAASTLRARRGMGELSCKIPKQ-------- 225
           +++P  S + S L S P  ++A+ +   ++ A S+  +  G    +  +           
Sbjct: 314 MTQPPLSSSASSLASPPPASNASTISSTSSVATSSSSSSSGCSSAASSLNSSPSSRLGAS 373

Query: 226 -SGVTAAAPRRQPIPCLSPV 282
            SGV A++P+ QPIP  S V
Sbjct: 374 GSGVNASSPQPQPIPPPSAV 393



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>STK36_PONPY (Q5RAJ5) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused|
           homolog)
          Length = 1315

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 209 ARFPSKAVSLLQHQGGNQSLA*VQWYCAFASLLLASLTMHALVSFNL 349
           A  P   +SLL+H   + SL    WY  F   L+A +  +   +FNL
Sbjct: 499 AGLPGLLLSLLRHSQESNSLQQQSWYGTFLQDLMAVIQAYFACTFNL 545



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>STK36_HUMAN (Q9NRP7) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused|
           homolog)
          Length = 1315

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 209 ARFPSKAVSLLQHQGGNQSLA*VQWYCAFASLLLASLTMHALVSFNL 349
           A  P   +SLL+H   + SL    WY  F   L+A +  +   +FNL
Sbjct: 499 AGLPGLLLSLLRHSQESNSLQQQSWYGTFLQDLMAVIQAYFACTFNL 545



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>THIO_CHLPN (Q9Z7P5) Thioredoxin (TRX)|
          Length = 102

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 264 DWLPPWC--CSSDTALLGNLAAELPH 193
           D+   WC  C   T +L NLAAELPH
Sbjct: 22  DFFAEWCGPCRMLTPILENLAAELPH 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,645,650
Number of Sequences: 219361
Number of extensions: 1867928
Number of successful extensions: 4582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4580
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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