>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     ctgccaatgccaatgctgctgc 53
              ||||||||||||||||||||||
Sbjct: 646569 ctgccaatgccaatgctgctgc 646548

>gb|AF387640.1| Coxiella burnetii dTDP-glucose-4,6 dehydratase, dehydratase-like
             protein, bifunctional ADP-heptose synthetase,
             UDP-glucose-6-dehydrogenase, UDP-glucose-4-epimerase,
             TPP-dependent acetoin dehydrogenase subunit a/b fusion
             protein, GDP-4-keto-6 deoxymannose epimerase/reductase,
             GDP-D-mannose dehydratase, glycosyl transferase,
             S-adenosyl-dependent methyl transferase, pyruvate
             dehydrogenase beta subunit, pyruvate dehydrogenase alpha
             subunit, glycosyl transferase, membrane sensor protein,
             membrane sensor protein, sulfotransferase, ATP
             sulfurylase, CysQ, keto acyl carrier protein reductase,
             transport protein permease, and LPS/O-antigen export
             permease genes, complete cds; tRNA-Lys gene, complete
             sequence; and unknown genes
          Length = 38584

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 32    ctgccaatgccaatgctgctgc 53
             ||||||||||||||||||||||
Sbjct: 29374 ctgccaatgccaatgctgctgc 29353

>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 336   tttcatttaatctttgtttctctag 360
             ||||||||||| |||||||||||||
Sbjct: 76381 tttcatttaatttttgtttctctag 76405

>gb|AC115045.13| Mus musculus chromosome 6, clone RP24-315D19, complete sequence
          Length = 177917

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 524   gtttaagtaaataaagggcat 544
             |||||||||||||||||||||
Sbjct: 65085 gtttaagtaaataaagggcat 65065

>gb|AC159547.4| Mus musculus 6 BAC RP23-235P6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204498

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 524    gtttaagtaaataaagggcat 544
              |||||||||||||||||||||
Sbjct: 201008 gtttaagtaaataaagggcat 200988

>gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete sequence
          Length = 112154

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   ttcttttagcttccttaacca 323
             |||||||||||||||||||||
Sbjct: 65765 ttcttttagcttccttaacca 65745

>gb|AC022306.6| Homo sapiens chromosome 15 clone RP11-295H24 map 15q21.1, complete
             sequence
          Length = 176827

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 455   gcagcaaaaaccatgttaaga 475
             |||||||||||||||||||||
Sbjct: 95137 gcagcaaaaaccatgttaaga 95117

>gb|AC164112.2| Mus musculus BAC clone RP23-266E12 from chromosome 16, complete
             sequence
          Length = 171693

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 326   catgcattagtttcatttaat 346
             |||||||||||||||||||||
Sbjct: 80477 catgcattagtttcatttaat 80497

>gb|DQ067240.1| Brassica napus clone CA35 AFLP fragment, mRNA sequence
          Length = 353

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  aagaaggtctctcgtcccgtc 84
           |||||||||||||||||||||
Sbjct: 172 aagaaggtctctcgtcccgtc 192

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 336      tttcatttaatctttgtttctctag 360
                ||||||||||| |||||||||||||
Sbjct: 19593306 tttcatttaatttttgtttctctag 19593330

>gb|AC026329.14| Homo sapiens 3 BAC RP11-325J6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 117404

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 184    agaagggggatgggggagctcagct 208
              ||||||||| |||||||||||||||
Sbjct: 101254 agaaggggggtgggggagctcagct 101230

>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 336  tttcatttaatctttgtttctctag 360
            ||||||||||| |||||||||||||
Sbjct: 2788 tttcatttaatttttgtttctctag 2812

>gb|AC006949.8|AC006949 Mus musculus chromosome 6, clone 454_F_16, complete sequence
          Length = 123423

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 524    gtttaagtaaataaagggcat 544
              |||||||||||||||||||||
Sbjct: 115323 gtttaagtaaataaagggcat 115303

>gb|AC158301.4| Mus musculus chromosome 5, clone RP24-71D19, complete sequence
          Length = 234479

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 456    cagcaaaaaccatgttaagatgtg 479
              |||| |||||||||||||||||||
Sbjct: 111959 cagctaaaaccatgttaagatgtg 111936

>ref|XM_622876.3| PREDICTED: Mus musculus armadillo repeat containing 3 (Armc3), mRNA
          Length = 2721

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   cctgccaatgccaatgctgctgca 54
            ||||| ||||||||||||||||||
Sbjct: 1129 cctgcaaatgccaatgctgctgca 1152

>ref|XM_994747.1| PREDICTED: Mus musculus armadillo repeat containing 3 (Armc3), mRNA
          Length = 2996

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   cctgccaatgccaatgctgctgca 54
            ||||| ||||||||||||||||||
Sbjct: 1404 cctgcaaatgccaatgctgctgca 1427

>ref|XM_912414.2| PREDICTED: Mus musculus armadillo repeat containing 3 (Armc3), mRNA
          Length = 2999

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   cctgccaatgccaatgctgctgca 54
            ||||| ||||||||||||||||||
Sbjct: 1407 cctgcaaatgccaatgctgctgca 1430

>ref|XM_130012.6| PREDICTED: Mus musculus armadillo repeat containing 3 (Armc3), mRNA
          Length = 2995

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   cctgccaatgccaatgctgctgca 54
            ||||| ||||||||||||||||||
Sbjct: 1403 cctgcaaatgccaatgctgctgca 1426

>gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosome 9, complete sequence
          Length = 187995

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   caccactgcctgcccatgcc 135
             ||||||||||||||||||||
Sbjct: 42767 caccactgcctgcccatgcc 42748

>gb|AY281357.1|AY281357S1 Uncultured Acidobacteria bacterium clone 46h5 genomic sequence
          Length = 14682

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   gcttccaaggcttgctcctt 104
            ||||||||||||||||||||
Sbjct: 6242 gcttccaaggcttgctcctt 6223

>gb|AC116773.8| Mus musculus chromosome 1, clone RP23-430H21, complete sequence
          Length = 210414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   gcaagaagggggatggggga 200
             ||||||||||||||||||||
Sbjct: 69972 gcaagaagggggatggggga 69953

>emb|CR759881.16| Zebrafish DNA sequence from clone CH211-165K16 in linkage group 18,
             complete sequence
          Length = 123400

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   ttagtttcatttaatctttg 351
             ||||||||||||||||||||
Sbjct: 95514 ttagtttcatttaatctttg 95495

>emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on chromosome X, complete
            sequence
          Length = 92522

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 346  tctttgtttctctaggttct 365
            ||||||||||||||||||||
Sbjct: 6954 tctttgtttctctaggttct 6973

>emb|AL078646.29|HSJ709L21 Human DNA sequence from clone RP4-709L21 on chromosome 1q42.13-43
             Contains part of the GALNT2 gene for
             UDP-N-acetyl-alpha-D-galactosamine:polypeptide
             N-acetylgalactosaminyltransferase 2 (GalNAc-T2), complete
             sequence
          Length = 129413

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   ctgcccatgccactgctctg 144
             ||||||||||||||||||||
Sbjct: 34616 ctgcccatgccactgctctg 34597

>ref|XM_785606.1| PREDICTED: Strongylocentrotus purpuratus similar to Tyrosine-protein
            phosphatase 10D precursor (Receptor-linked
            protein-tyrosine phosphatase 10D) (LOC585795), mRNA
          Length = 3381

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 143  tgaagaagatgacgactcca 162
            ||||||||||||||||||||
Sbjct: 1879 tgaagaagatgacgactcca 1860

>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8, complete
              sequence
          Length = 207382

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    cagtcatttgtaattttaca 427
              ||||||||||||||||||||
Sbjct: 176635 cagtcatttgtaattttaca 176616

>gb|AC116035.2| Homo sapiens chromosome 3 clone RP11-261F17, complete sequence
          Length = 170258

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     tgccaatgccaatgctgctg 52
              ||||||||||||||||||||
Sbjct: 153568 tgccaatgccaatgctgctg 153587

>emb|BX324135.14| Zebrafish DNA sequence from clone DKEY-16J16, complete sequence
          Length = 229936

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    ttctttcaatccctctcagt 411
              ||||||||||||||||||||
Sbjct: 176000 ttctttcaatccctctcagt 176019

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 52      gcacccggtgtgaagaaggt 71
               ||||||||||||||||||||
Sbjct: 1950283 gcacccggtgtgaagaaggt 1950264

>dbj|AK041744.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630034B15 product:hypothetical
            Armadillo/plakoglobin ARM repeat profile containing
            protein, full insert sequence
          Length = 2118

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   cctgccaatgccaatgctgctgca 54
            ||||| ||||||||||||||||||
Sbjct: 1227 cctgcaaatgccaatgctgctgca 1250

>dbj|AK014880.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4921513G22 product:CDNA FLJ32827 FIS,
            CLONE TESTI2003109, WEAKLY SIMILAR TO VACUOLAR PROTEIN 8
            (FRAGMENT) homolog [Homo sapiens], full insert sequence
          Length = 2808

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   cctgccaatgccaatgctgctgca 54
            ||||| ||||||||||||||||||
Sbjct: 1219 cctgcaaatgccaatgctgctgca 1242

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 29      tgcctgccaatgccaatgct 48
               ||||||||||||||||||||
Sbjct: 3666934 tgcctgccaatgccaatgct 3666915

>gb|AC068286.5| Homo sapiens BAC clone RP11-526G2 from 2, complete sequence
          Length = 137631

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 332  ttagtttcatttaatctttgtttc 355
            ||||||||||||| ||||||||||
Sbjct: 5336 ttagtttcatttattctttgtttc 5359

>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0014B15
          Length = 158821

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tgcctgccaatgccaatgct 48
             ||||||||||||||||||||
Sbjct: 61162 tgcctgccaatgccaatgct 61143

>gb|AC171178.2| Gallus gallus BAC clone CH261-77I20 from chromosome ul, complete sequence
          Length = 237797

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 614    cataaaacgcactcgctgca 633
              ||||||||||||||||||||
Sbjct: 157465 cataaaacgcactcgctgca 157484

>gb|AC157945.2| Mus musculus BAC clone RP23-289C11 from chromosome 9, complete sequence
          Length = 216396

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    caccactgcctgcccatgcc 135
              ||||||||||||||||||||
Sbjct: 154823 caccactgcctgcccatgcc 154804

>emb|AL671982.4| Mouse DNA sequence from clone RP23-132H1 on chromosome X, complete
             sequence
          Length = 190627

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   caagattcctagtgttcttt 397
             ||||||||||||||||||||
Sbjct: 21694 caagattcctagtgttcttt 21713


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,914,128
Number of Sequences: 3902068
Number of extensions: 6914128
Number of successful extensions: 159548
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159354
Number of HSP's gapped (non-prelim): 194
length of query: 680
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 657
effective length of database: 17,143,297,704
effective search space: 11263146591528
effective search space used: 11263146591528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)