>S35C2_MOUSE (Q8VCX2) Solute carrier family 35 member C2 (Ovarian cancer|
           overexpressed gene 1 protein)
          Length = 364

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
 Frame = +1

Query: 106 KAALDAGAWMFNVVTSVGIIMVNKALMATHGFSFATTLTGMHFATTTLMT---------- 255
           KAAL  G  +     S+GI   NK L  T  F F   +T +H A   L +          
Sbjct: 13  KAALTLGLVLLYYCFSIGITFYNKWL--TKSFHFPLFMTMLHLAVIFLFSALSRALVQCS 70

Query: 256 -----LVMKWLGYVQPSHLPLSELVKFVFFANLSIVGMNVSLMWNSVGFYQIAKLSIIPL 420
                +V+ W  Y       L  +        L +   N S ++ +V  Y + K S +  
Sbjct: 71  SHKARVVLSWTDY-------LRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLF 123

Query: 421 LCIMEVLFE 447
           + I  ++F+
Sbjct: 124 ILIFSLIFK 132

>YAGC_SCHPO (Q09875) Hypothetical protein C12G12.12 in chromosome I|
          Length = 324

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 274 GYVQPSHLPLSELVKFVFFANLSIVG---MNVSLMWNSVGFYQIAKLSII 414
           GY    HLPL   V     A + I G   MNV L++ S   YQ+ + S+I
Sbjct: 63  GYESLDHLPLKHKVFMALPAIMDICGSTLMNVGLLYTSASIYQMTRGSLI 112

>YRDR_BACSU (O07086) Hypothetical transport protein yrdR|
          Length = 321

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 27/89 (30%), Positives = 41/89 (46%)
 Frame = +1

Query: 187 ATHGFSFATTLTGMHFATTTLMTLVMKWLGYVQPSHLPLSELVKFVFFANLSIVGMNVSL 366
           +T  +S  T L G   A T +MT ++   GYV    + +   +K+ F   +++ G+   L
Sbjct: 187 STLRYSTLTCLFGT--AITGIMTAILTAQGYVSVPSIKVIAAIKYDFLFMITLPGIIALL 244

Query: 367 MWNSVGFYQIAKLSIIPLLCIMEVLFENF 453
            WN    Y I  LS      I  +LF NF
Sbjct: 245 SWN----YGIKILS-----SINGILFINF 264

>MAF1_YEAST (P41910) Repressor of RNA polymerase III transcription MAF1|
          Length = 395

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
 Frame = +1

Query: 160 IIMVNKALMATHGFSFATTLTGMHFATTTLMTLVMK--------------WLGYVQPSHL 297
           +I +  A    H FS   ++    F  T+L T + K              W+  V  SH+
Sbjct: 238 LIAILNASYPDHDFS---SVEPTDFVKTSLKTFISKFENTLYSLGRQPEEWVWEVINSHM 294

Query: 298 PLSELVKFVFFANLSIVGMNVSLMWNSVGF 387
            LS+ V F +  + S +      +WN +GF
Sbjct: 295 TLSDCVLFQYSPSNSFLEDEPGYLWNLIGF 324

>ATR_CANAL (Q59LR2) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase MEC1) (Mitosis entry
           checkpoint protein 1) (ATR homolog)
          Length = 2325

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 292 HLPLSELVKFVFFANLS-IVGMNVSLMWNSVGFYQIAKLSIIPLLCIMEVLFENFR 456
           +L L + +K VF  + S  + +NVS+ WN +GF          L CI+E L ++FR
Sbjct: 238 NLNLLDCLKSVFILDQSSALVLNVSVGWNQIGFL---------LSCIVEYLQQDFR 284

>YIY4_SCHPO (Q9UUI8) Protein C22F8.04 in chromosome I|
          Length = 383

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = +1

Query: 142 VVTSVGIIMVNKALMATHGFSFATTLTGMHFATTTLMTLVMKWLGYVQPSHLPLS---EL 312
           +V ++ + ++NK   A +  +    +     A T+LM  +      V    L L+   +L
Sbjct: 97  IVFAILVTILNK--QALNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAIQL 154

Query: 313 VKFVFFANLSIVGMNVSLMWNSVGFYQIAKLSIIPLLCIM 432
            KF+F   L IV     L +  V FYQI++  ++P   ++
Sbjct: 155 KKFIFVKILGIVSKTYCLAFVPVSFYQISRGLLLPFTILL 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,849,592
Number of Sequences: 219361
Number of extensions: 1714664
Number of successful extensions: 4427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4427
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)