ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22l19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473840.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 256 bits (129), Expect = 7e-65 Identities = 183/201 (91%) Strand = Plus / Plus Query: 33 catgtacctataaactcgagtatagagttcgtcatacttgccagcgatggattatggaag 92 |||||||| ||||| || || |||||||||||||||||||||||||||||| |||||||| Sbjct: 754 catgtaccaataaattcaagcatagagttcgtcatacttgccagcgatggactatggaag 813 Query: 93 gtgatgaagaaccaggaagccgtggacctcgtgaagtcgacaaaggacccccaggcagca 152 || |||||||||||||||||||| || || |||||||||| |||||||||||||||||| Sbjct: 814 gtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcagca 873 Query: 153 gccaagcggctgacgaccgaggcgctcgcgaggaagagcaaggacgatatctcctgcatc 212 || ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct: 874 gcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgcatc 933 Query: 213 gttatccgcttccgctgctga 233 || ||||| |||||||||||| Sbjct: 934 gtcatccgattccgctgctga 954
>dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full insert sequence Length = 1585 Score = 250 bits (126), Expect = 4e-63 Identities = 183/202 (90%) Strand = Plus / Plus Query: 33 catgtacctataaactcgagtatagagttcgtcatacttgccagcgatggattatggaag 92 |||||||| |||| || || |||||||||||||||||||||||||||||| |||||||| Sbjct: 1028 catgtaccaataagttcaagcatagagttcgtcatacttgccagcgatggactatggaag 1087 Query: 93 gtgatgaagaaccaggaagccgtggacctcgtgaagtcgacaaaggacccccaggcagca 152 || |||||||||||||||||||| || || |||||||||| |||||||||||||||||| Sbjct: 1088 gtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcagca 1147 Query: 153 gccaagcggctgacgaccgaggcgctcgcgaggaagagcaaggacgatatctcctgcatc 212 || ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct: 1148 gcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgcatc 1207 Query: 213 gttatccgcttccgctgctgaa 234 || ||||| ||||||||||||| Sbjct: 1208 gtcatccgattccgctgctgaa 1229
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 182 bits (92), Expect = 9e-43 Identities = 131/144 (90%) Strand = Plus / Minus Query: 91 aggtgatgaagaaccaggaagccgtggacctcgtgaagtcgacaaaggacccccaggcag 150 |||| |||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 177153 aggtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcag 177094 Query: 151 cagccaagcggctgacgaccgaggcgctcgcgaggaagagcaaggacgatatctcctgca 210 |||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 177093 cagcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgca 177034 Query: 211 tcgttatccgcttccgctgctgaa 234 |||| ||||| ||||||||||||| Sbjct: 177033 tcgtcatccgattccgctgctgaa 177010 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 33 catgtacctataaactcgagtatagagttcgtcatacttgccagcgatggattatggaag 92 |||||||| ||||| || || |||||||||||||||||||||||||||||| |||||||| Sbjct: 177534 catgtaccaataaattcaagcatagagttcgtcatacttgccagcgatggactatggaag 177475 Query: 93 gt 94 || Sbjct: 177474 gt 177473
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 182 bits (92), Expect = 9e-43 Identities = 131/144 (90%) Strand = Plus / Minus Query: 91 aggtgatgaagaaccaggaagccgtggacctcgtgaagtcgacaaaggacccccaggcag 150 |||| |||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 7000 aggtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcag 6941 Query: 151 cagccaagcggctgacgaccgaggcgctcgcgaggaagagcaaggacgatatctcctgca 210 |||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 6940 cagcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgca 6881 Query: 211 tcgttatccgcttccgctgctgaa 234 |||| ||||| ||||||||||||| Sbjct: 6880 tcgtcatccgattccgctgctgaa 6857 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 33 catgtacctataaactcgagtatagagttcgtcatacttgccagcgatggattatggaag 92 |||||||| ||||| || || |||||||||||||||||||||||||||||| |||||||| Sbjct: 7381 catgtaccaataaattcaagcatagagttcgtcatacttgccagcgatggactatggaag 7322 Query: 93 gt 94 || Sbjct: 7321 gt 7320
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 182 bits (92), Expect = 9e-43 Identities = 131/144 (90%) Strand = Plus / Minus Query: 91 aggtgatgaagaaccaggaagccgtggacctcgtgaagtcgacaaaggacccccaggcag 150 |||| |||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 30909632 aggtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcag 30909573 Query: 151 cagccaagcggctgacgaccgaggcgctcgcgaggaagagcaaggacgatatctcctgca 210 |||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 30909572 cagcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgca 30909513 Query: 211 tcgttatccgcttccgctgctgaa 234 |||| ||||| ||||||||||||| Sbjct: 30909512 tcgtcatccgattccgctgctgaa 30909489 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 33 catgtacctataaactcgagtatagagttcgtcatacttgccagcgatggattatggaag 92 |||||||| ||||| || || |||||||||||||||||||||||||||||| |||||||| Sbjct: 30910013 catgtaccaataaattcaagcatagagttcgtcatacttgccagcgatggactatggaag 30909954 Query: 93 gt 94 || Sbjct: 30909953 gt 30909952
>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete sequence Length = 134586 Score = 182 bits (92), Expect = 9e-43 Identities = 131/144 (90%) Strand = Plus / Minus Query: 91 aggtgatgaagaaccaggaagccgtggacctcgtgaagtcgacaaaggacccccaggcag 150 |||| |||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 86626 aggtaatgaagaaccaggaagccgtcgatcttgtgaagtcgatcaaggacccccaggcag 86567 Query: 151 cagccaagcggctgacgaccgaggcgctcgcgaggaagagcaaggacgatatctcctgca 210 |||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 86566 cagcgaagcgactgacgaccgaagcgcttgcgaggaagagcaaggacgacatctcctgca 86507 Query: 211 tcgttatccgcttccgctgctgaa 234 |||| ||||| ||||||||||||| Sbjct: 86506 tcgtcatccgattccgctgctgaa 86483 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 33 catgtacctataaactcgagtatagagttcgtcatacttgccagcgatggattatggaag 92 |||||||| ||||| || || |||||||||||||||||||||||||||||| |||||||| Sbjct: 87007 catgtaccaataaattcaagcatagagttcgtcatacttgccagcgatggactatggaag 86948 Query: 93 gt 94 || Sbjct: 86947 gt 86946
>gb|AE004956.1| Pseudomonas aeruginosa PAO1, section 517 of 529 of the complete genome Length = 11660 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 89 gaaggtgatgaagaaccaggaag 111 ||||||||||||||||||||||| Sbjct: 7407 gaaggtgatgaagaaccaggaag 7385
>gb|AC116815.15| Mus musculus chromosome 5, clone RP24-357H22, complete sequence Length = 179737 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 460 gtctatcattcatctgtgcatatatcacac 489 |||| |||||||| |||||||||||||||| Sbjct: 93432 gtctctcattcatgtgtgcatatatcacac 93461
>ref|XM_368607.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00637.4) partial mRNA Length = 1875 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 142 cccaggcagcagccaagcggct 163 |||||||||||||||||||||| Sbjct: 1047 cccaggcagcagccaagcggct 1068
>gb|AC157929.6| Mus musculus chromosome 5, clone RP24-122G17, complete sequence Length = 193178 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 460 gtctatcattcatctgtgcatatatcacac 489 |||| |||||||| |||||||||||||||| Sbjct: 184469 gtctctcattcatgtgtgcatatatcacac 184498
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 69 cttgccagcgatggattatggaaggtgatg 98 ||||| || ||||||||||||||||||||| Sbjct: 19191081 cttgcaagtgatggattatggaaggtgatg 19191052 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 184 ggaagagcaaggacgatatctcctgcatcgtt 215 |||| ||||| ||||| ||||||||||||||| Sbjct: 19190035 ggaaaagcaaagacgacatctcctgcatcgtt 19190004
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 69 cttgccagcgatggattatggaaggtgatg 98 ||||| || ||||||||||||||||||||| Sbjct: 114476 cttgcaagtgatggattatggaaggtgatg 114447 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 184 ggaagagcaaggacgatatctcctgcatcgtt 215 |||| ||||| ||||| ||||||||||||||| Sbjct: 113430 ggaaaagcaaagacgacatctcctgcatcgtt 113399
>gb|DQ190053.1| Cystobacter fuscus MmxC (mmxC) and MmxB (mmxB) genes, partial cds Length = 12757 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 gacgaccgaggcgctcgcgag 184 ||||||||||||||||||||| Sbjct: 9616 gacgaccgaggcgctcgcgag 9636
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 caagcggctgacgaccgaggcgct 178 ||||| |||||||||||||||||| Sbjct: 235325 caagccgctgacgaccgaggcgct 235302
>ref|XM_478310.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 184 ggaagagcaaggacgatatctcctgcatcgtt 215 |||| ||||| ||||| ||||||||||||||| Sbjct: 839 ggaaaagcaaagacgacatctcctgcatcgtt 870
>gb|AY985531.1| Uncultured bacterium clone C506 16S ribosomal RNA gene, partial sequence Length = 1386 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 aatctgtggaacatctcgtt 527 |||||||||||||||||||| Sbjct: 57 aatctgtggaacatctcgtt 38
>emb|AL109740.27|HSDJ38L1 Human DNA sequence from clone RP1-38L1 on chromosome 1p34.2-36.11, complete sequence Length = 65581 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 gttgattgtgatggtaaatt 556 |||||||||||||||||||| Sbjct: 6539 gttgattgtgatggtaaatt 6558
>gb|AC164177.6| Mus musculus 10 BAC RP23-102O12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196230 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 acaggcttgagattagtaga 385 |||||||||||||||||||| Sbjct: 53552 acaggcttgagattagtaga 53571
>gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 209599 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 acaggcttgagattagtaga 385 |||||||||||||||||||| Sbjct: 201077 acaggcttgagattagtaga 201096 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,622,532 Number of Sequences: 3902068 Number of extensions: 3622532 Number of successful extensions: 62890 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62787 Number of HSP's gapped (non-prelim): 103 length of query: 581 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 558 effective length of database: 17,143,297,704 effective search space: 9565960118832 effective search space used: 9565960118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
