>YDOC_SCHPO (O13732) Hypothetical protein C15A10.12c in chromosome I|
          Length = 117

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
 Frame = +3

Query: 108 IVCVAVVGHQNNPLYLQSFTEADDAL--KLHHVVHCSLDVIDERVNNPKRSAPTLNETFL 281
           +V +++ G ++  LYL+     +  L  +  ++   SLDVI++ VN+ +R   T N+ FL
Sbjct: 6   LVFLSIAGPKDEQLYLEIIDPKEKHLLARYQYLGELSLDVINDLVNDGER---TSNDCFL 62

Query: 282 GLLYPTENYKVYGYLTNTKVKFLMV--TTDLDVKDADAR 392
           GLL   E+   Y + +NTKVKF++     D  VK+ + R
Sbjct: 63  GLLGVEEDISTYAFYSNTKVKFILAVKAPDYVVKETEIR 101

>TRS20_YEAST (P38334) Transport protein particle 20 kDa subunit (TRAPP 20 kDa|
           subunit)
          Length = 175

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 35/165 (21%)
 Frame = +3

Query: 120 AVVGHQNNPLYLQSFTEAD-------DALKLH-HVVHCSLDVIDE---RVNNPK------ 248
           A++G ++NP+Y   FT A+       D  +L+  ++H SLD++++   ++N         
Sbjct: 6   AIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQLNGNG 65

Query: 249 -------------RSAPTLNETFLGLLYPTENYKVYGYLTNTKVKFLMV-----TTDLDV 374
                        R+    +  +LG +       +  Y++ + +KF+M+      + + +
Sbjct: 66  GNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSVVI 125

Query: 375 KDADARNFFRKFHAAYVDAVSNPFHVPGKKIASRSFGARVSTIVK 509
            D + R+F+++ H  YV  + NPF+     I S +F +RV T+ +
Sbjct: 126 DDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLAR 170

>TPPC2_HUMAN (O14582) Trafficking protein particle complex protein 2 (Sedlin)|
           (MBP-1-interacting protein 2A) (MIP-2A)
          Length = 140

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
 Frame = +3

Query: 123 VVGHQNNPLYLQSFTEA------DDALKLHH-VVHCSLDVIDERVNNPKRSAPTLNETFL 281
           +VGH +NP++   F  A      DD   L+  + H +LD++DE +          N  +L
Sbjct: 9   IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMW-------LSNNMYL 61

Query: 282 GLLYPTENYKVYGYLTNTKVKFLMVTTDLDVKDADA-RNFFRKFHAAYVDAVSNPFHVPG 458
             +     + V  ++T   ++F+M+    D++  D  +NFF   +  Y+    NPF+ P 
Sbjct: 62  KTVDKFNEWFVSAFVTAGHMRFIMLH---DIRQEDGIKNFFTDVYDLYIKFSMNPFYEPN 118

Query: 459 KKIASRSFGARVSTIVK 509
             I S +F  +V  + K
Sbjct: 119 SPIRSSAFDRKVQFLGK 135

>TPPC2_MOUSE (Q9CQP2) Trafficking protein particle complex protein 2 (Sedlin)|
          Length = 140

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
 Frame = +3

Query: 123 VVGHQNNPLYLQSFT------EADDALKLHH-VVHCSLDVIDERVNNPKRSAPTLNETFL 281
           +VGH +NP++   F         DD   L+  + H +LD++DE +          N  +L
Sbjct: 9   IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMW-------LSNNMYL 61

Query: 282 GLLYPTENYKVYGYLTNTKVKFLMVTTDLDVKDADA-RNFFRKFHAAYVDAVSNPFHVPG 458
             +     + V  ++T   ++F+M+    DV+  D  +NFF   +  Y+    NPF+ P 
Sbjct: 62  KTVDKFNEWFVSAFVTAGHMRFIMLH---DVRQEDGIKNFFTDVYDLYIKFAMNPFYEPN 118

Query: 459 KKIASRSFGARVSTIVK 509
             I S +F  +V  + K
Sbjct: 119 SPIRSSAFDRKVQFLGK 135

>FBX28_HUMAN (Q9NVF7) F-box only protein 28|
          Length = 368

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 25/79 (31%), Positives = 40/79 (50%)
 Frame = +3

Query: 6   QPPSIRRAPPSRCSRVNCRPADSAAPDQLPSGNMIVCVAVVGHQNNPLYLQSFTEADDAL 185
           QPP      P   S+    PA + APDQLP  N +V + +V  +N    + SF   D+  
Sbjct: 32  QPPPPAPQHPQPGSQA--LPAPALAPDQLPQNNTLVALPIVAIEN----ILSFMSYDEIS 85

Query: 186 KLHHVVHCSLDVIDERVNN 242
           +L  +V   +D++ +R+ N
Sbjct: 86  QL-RLVCKRMDLVCQRMLN 103

>NHR79_CAEEL (O18141) Nuclear hormone receptor family member nhr-79|
          Length = 463

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -2

Query: 548 GRLVLTDSP*AKGFHYGAHS----RAEASRRDLLPRDVERVRDGIHVCSMELPEKISGIR 381
           G+ ++ DSP A  +H+GA S     A   R   + +  E + DG+H C ++         
Sbjct: 4   GKCMVCDSPNATNYHFGAQSCKACAAFFRRSIAMDQCYECLGDGVHSCKID--------- 54

Query: 380 IFHIKISCNH*KFDLC 333
              ++++C H +   C
Sbjct: 55  -HTLRLNCRHCRLKKC 69

>CYC_CRIFA (P00078) Cytochrome c|
          Length = 113

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 216 DVIDERVNNPKRSAPTLNETFLGLLYPTENYKVYGYLTNTK 338
           DV+D  + NPK+  P    +F G+  P E   V  YL   K
Sbjct: 72  DVLDVYLENPKKFMPGTKMSFAGMKKPQERADVIAYLETLK 112

>CYC_CRION (P00077) Cytochrome c|
          Length = 112

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 216 DVIDERVNNPKRSAPTLNETFLGLLYPTENYKVYGYLTNTK 338
           +V+D  + NPK+  P    +F G+  P E   +  YL N K
Sbjct: 72  EVLDVYLENPKKFMPGTKMSFAGIKKPQERADLIAYLENLK 112

>ENGB_METKA (Q8TYT5) Probable GTP-binding protein engB|
          Length = 203

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -2

Query: 584 GIDRLPVMGKSTGRLVLTDSP*AKGFHYGAHSRAEASRRDLLPRDVE---RVRDGIHVCS 414
           G+ R PV  +  G LVL D P   GF  G   R +   +DL+ R +E    +   IHV  
Sbjct: 35  GVTRKPVFHELDGELVLVDMP-GFGFMSGVPRRYQERVKDLIVRYLEEKDNILFAIHVVD 93

Query: 413 ME-LPE 399
            + LPE
Sbjct: 94  AKALPE 99

>CBP1_HORVU (P07519) Serine carboxypeptidase 1 precursor (EC 3.4.16.5) (Serine|
           carboxypeptidase I) (Carboxypeptidase C) (CP-MI)
           [Contains: Serine carboxypeptidase 1 chain A (Serine
           carboxypeptidase I chain A); Serine carboxypeptidase 1
           chain B (Serine car
          Length = 499

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 369 DVKDA-DARNFFRKFHAAYVDAVSNPFHVPGKKIASRSFGARVSTIVKSFGSGTVG*NQP 545
           D+K A D+  F  K+   Y + +SNPF++ G+  A    G  V T+      G  G  +P
Sbjct: 156 DLKTATDSHTFLLKWFQLYPEFLSNPFYIAGESYA----GVYVPTLSHEVVKGIQGGAKP 211

Query: 546 SCAF 557
           +  F
Sbjct: 212 TINF 215

>NUGM_CANMA (Q00673) Probable NADH-ubiquinone oxidoreductase 30.4 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-30KD) (CI-31KD) (Alkane-inducible protein 1)
          Length = 276

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = +3

Query: 153 LQSFTEADDALKLHHVVHCSLDVIDERVNNPKRSAPTLNETFLGLLYPTENYKV 314
           L+SFT ++  L  H       D+++  VNN  R  PT  E ++ L+ PTE YKV
Sbjct: 17  LRSFTTSNVRLSAHEE-----DLVN--VNNLPRPKPT--ENYVPLINPTEKYKV 61

>YAW5_SCHPO (Q10180) Hypothetical protein C3F10.05c in chromosome I|
          Length = 326

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 214 REQWTTWWSLRASSASVKLWRYSGLFWWPTT 122
           R+ W+ WWSL   +     W    L W P T
Sbjct: 63  RDLWSIWWSLSRKATRFYRWLSRSLKWRPVT 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,469,908
Number of Sequences: 219361
Number of extensions: 1647246
Number of successful extensions: 4731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)