ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags23a13 |
|---|---|
| Clone Library Name | barley_pub |
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 121 bits (304), Expect = 1e-27 Identities = 70/165 (42%), Positives = 80/165 (48%) Frame = +1 Query: 4 KILKDDTTLDANKVAENSFLVIMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183 K+LKD+TTL+ N V ENSF+VIML Sbjct: 50 KVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTA 109 Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPAAAVTASGDADVYSQAASNLVSGGILEQ 363 A A AS DVY QAASNLV+G LE Sbjct: 110 SVPVPTSGTATAA-------------------APATAASVQTDVYGQAASNLVAGTTLES 150 Query: 364 TVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVE 498 TVQQILDMGGG+W+RD VVRALRAA+NNPERA++YLYSGIP E Sbjct: 151 TVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAE 195
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 120 bits (301), Expect = 3e-27 Identities = 67/165 (40%), Positives = 82/165 (49%) Frame = +1 Query: 4 KILKDDTTLDANKVAENSFLVIMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183 K+LKDDTTLD NKV ENSFLVIML Sbjct: 51 KVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAP 110 Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPAAAVTASGDADVYSQAASNLVSGGILEQ 363 +PA AV S +AD Y QA SNLV+G LE Sbjct: 111 VAPATTVPVTVSAPTPTATA----------SPAPAVAVSSEADNYGQATSNLVAGSNLEA 160 Query: 364 TVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVE 498 T+Q IL+MGGG W+RD+V+ AL AA+NNPERA++YLYSG+PE ++ Sbjct: 161 TIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMD 205
>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)| (AtRAD23-2) Length = 368 Score = 110 bits (276), Expect = 2e-24 Identities = 63/164 (38%), Positives = 77/164 (46%) Frame = +1 Query: 4 KILKDDTTLDANKVAENSFLVIMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183 K+LKD+TTL NKV E FLV+ML Sbjct: 51 KVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQ 110 Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPAAAVTASGDADVYSQAASNLVSGGILEQ 363 TP + +D Y QAAS LVSG +EQ Sbjct: 111 SIAVPASNS---------------------TPVQE-QPTAQSDTYGQAASTLVSGSSIEQ 148 Query: 364 TVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESV 495 VQQI++MGGG+W+++ V RALRAAYNNPERA+DYLYSGIPE+V Sbjct: 149 MVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETV 192
>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)| (AtRAD23-1) Length = 371 Score = 109 bits (272), Expect = 7e-24 Identities = 63/169 (37%), Positives = 79/169 (46%), Gaps = 4/169 (2%) Frame = +1 Query: 4 KILKDDTTLDANKVAENSFLVIMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183 K+LKD+T+L NKV E FLV+ML Sbjct: 51 KVLKDETSLVENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPS 110 Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPAAAVTA----SGDADVYSQAASNLVSGG 351 PA+ + A + D Y QAAS LVSG Sbjct: 111 TTQSS------------------------PVPASPIPAQEQPAAQTDTYGQAASTLVSGS 146 Query: 352 ILEQTVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVE 498 LEQ VQQI++MGGG+W+++ V RALRAAYNNPERA+DYLYSGIP++ E Sbjct: 147 SLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAE 195
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 102 bits (253), Expect = 1e-21 Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 1/76 (1%) Frame = +1 Query: 274 TPAA-AVTASGDADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYNNP 450 TPA + DVY QAASNL +G LE T+QQILDMGGGTW+R+ VV ALRAA+NNP Sbjct: 159 TPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNP 218 Query: 451 ERAIDYLYSGIPESVE 498 ERA++YLY+GIPE E Sbjct: 219 ERAVEYLYTGIPEQAE 234 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/24 (70%), Positives = 23/24 (95%) Frame = +1 Query: 4 KILKDDTTLDANKVAENSFLVIML 75 K+LKD+TT++ NKVAENSF+VIM+ Sbjct: 51 KVLKDETTIEENKVAENSFIVIMM 74
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 63.9 bits (154), Expect = 3e-10 Identities = 34/76 (44%), Positives = 50/76 (65%) Frame = +1 Query: 271 DTPAAAVTASGDADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYNNP 450 ++ + +V +SG + AAS LV+G E + +I+ MG +ER+ VV ALRA+YNNP Sbjct: 135 ESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNP 191 Query: 451 ERAIDYLYSGIPESVE 498 RA++YL +GIP S E Sbjct: 192 HRAVEYLLTGIPGSPE 207
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 63.5 bits (153), Expect = 4e-10 Identities = 34/73 (46%), Positives = 48/73 (65%) Frame = +1 Query: 280 AAAVTASGDADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYNNPERA 459 + +V +SG + AAS LV+G E + +I+ MG +ER+ VV ALRA+YNNP RA Sbjct: 138 SGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRA 194 Query: 460 IDYLYSGIPESVE 498 ++YL +GIP S E Sbjct: 195 VEYLLTGIPGSPE 207
>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 409 Score = 61.6 bits (148), Expect = 2e-09 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%) Frame = +1 Query: 274 TPAAAVTASGDA---DVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYN 444 +P A + SGD+ +++ A S LV+G E V +I+ MG +ER+ V+ ALRA++N Sbjct: 160 SPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFN 216 Query: 445 NPERAIDYLYSGIP 486 NP+RA++YL GIP Sbjct: 217 NPDRAVEYLLMGIP 230
>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 416 Score = 60.8 bits (146), Expect = 3e-09 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%) Frame = +1 Query: 274 TPAAAVTASGDA---DVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYN 444 +PA A + GD+ +++ A S LV+G E V +I+ MG +ER+ V+ ALRA++N Sbjct: 160 SPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFN 216 Query: 445 NPERAIDYLYSGIP 486 NP+RA++YL GIP Sbjct: 217 NPDRAVEYLLMGIP 230
>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)| Length = 368 Score = 57.0 bits (136), Expect = 4e-08 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Frame = +1 Query: 274 TPAAAVTASGDADVYSQA---ASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYN 444 T AAA ++ D S+A A+ L G V+ +++MG +ER V RA+RAA+N Sbjct: 117 TVAAAAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVEMG---YERSEVERAMRAAFN 173 Query: 445 NPERAIDYLYSGIPESV 495 NP+RA++YL +GIPE + Sbjct: 174 NPDRAVEYLLTGIPEDI 190
>RAD23_YEAST (P32628) UV excision repair protein RAD23| Length = 398 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/59 (44%), Positives = 42/59 (71%) Frame = +1 Query: 319 SQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESV 495 S + V G +T+++I++MG ++R+ V RALRAA+NNP+RA++YL GIPE++ Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENL 191
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 35.0 bits (79), Expect = 0.16 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Frame = +1 Query: 280 AAAVTASGDADVYSQAASNLVSGGILEQTVQQIL----DMGGGTWERDMVVRALRAAYNN 447 A +T G S AS + G+ Q ++I+ MG ++R+ ++ALRA NN Sbjct: 700 AEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMG---FQRNQAIQALRATNNN 756 Query: 448 PERAIDYLYS 477 ERA+D+++S Sbjct: 757 LERALDWIFS 766
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/44 (40%), Positives = 28/44 (63%) Frame = +1 Query: 358 EQTVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPE 489 E V I+ MG + RD ++ALRA N+ ERA+D+++S I + Sbjct: 725 EDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDD 765
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/44 (40%), Positives = 28/44 (63%) Frame = +1 Query: 358 EQTVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPE 489 E V I+ MG + RD ++ALRA N+ ERA+D+++S I + Sbjct: 725 EDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDD 765
>DDI1_YEAST (P40087) DNA damage-inducible protein DDI1 (v-SNARE-master 1)| Length = 428 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = +1 Query: 358 EQTVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLY 474 EQT++Q++D+G + RD VV+AL+ N E A L+ Sbjct: 392 EQTIKQLMDLG---FPRDAVVKALKQTNGNAEFAASLLF 427
>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = -1 Query: 314 TSASPDAVTAAAGVSET---AEGCALGGAGSDAATGACEGG 201 T A G+ ET A G A GG G D ATG +GG Sbjct: 450 TDGGAGGAGGAGGIGETDGSAGGVATGGEGGDGATGGVDGG 490
>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = -1 Query: 314 TSASPDAVTAAAGVSET---AEGCALGGAGSDAATGACEGG 201 T A G+ ET A G A GG G D ATG +GG Sbjct: 450 TDGGAGGAGGAGGIGETDGSAGGVATGGEGGDGATGGVDGG 490
>HMW1_MYCPN (Q50365) Cytadherence high molecular weight protein 1 (Cytadherence| accessory protein 1) Length = 1018 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = -2 Query: 586 PVEVQPEPGMEPAGFVPVEQEQVLEPQ 506 PVEVQPEP +E E QV+EPQ Sbjct: 447 PVEVQPEPVVETVQEAVAEPTQVVEPQ 473
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/56 (33%), Positives = 23/56 (41%) Frame = -2 Query: 568 EPGMEPAGFVPVEQEQVLEPQVGPLRIQVFQNTGSQ*PSQGCYTQHVKHGQPYHVP 401 +PG G+ P +Q + Q G Q T SQ P QG Q V GQ P Sbjct: 358 QPGQGQPGYYPTSPQQSGQGQPGYYPTSSQQPTQSQQPGQGQQGQQVGQGQQAQQP 413
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/56 (33%), Positives = 23/56 (41%) Frame = -2 Query: 568 EPGMEPAGFVPVEQEQVLEPQVGPLRIQVFQNTGSQ*PSQGCYTQHVKHGQPYHVP 401 +PG G+ P +Q + Q G Q T SQ P QG Q V GQ P Sbjct: 353 QPGQGQPGYYPTSPQQSGQGQPGYYPTSSQQPTQSQQPGQGQQGQQVGQGQQAQQP 408
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +1 Query: 286 AVTASGDADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYNNPERAID 465 A TA + +Y S V GGI++ + + D GGG + + + A+ + + AI Sbjct: 489 AATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIA 548 Query: 466 YLYSGIPESVE 498 S IP VE Sbjct: 549 EAES-IPVLVE 558
>CAPP2_CHLRE (Q6R2V6) Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEP| carboxylase 2) (PEPCase 2) (PEPC 2) Length = 1221 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -1 Query: 344 ETRFDAA*LYTSASPDAVTAAAGVSETAEGCALGGAGSDAATGACEGGD 198 +T DAA SA+ A AAAG A+G + GGA + A A D Sbjct: 346 QTATDAASHGGSAASAAAAAAAGGDVVADGTSGGGAAAAAGPAAAAAAD 394 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.130 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,275,515 Number of Sequences: 219361 Number of extensions: 969496 Number of successful extensions: 2542 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2536 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
