ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags22l12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1NUSG_AQUAE (O67757) Transcription antitermination protein nusG 54 4e-07
2NUSG_THET8 (P35872) Transcription antitermination protein nusG 54 5e-07
3NUSG_TREPA (O83264) Transcription antitermination protein nusG 53 9e-07
4NUSG_BACSU (Q06795) Transcription antitermination protein nusG 51 3e-06
5NUSG_NEIMB (P65592) Transcription antitermination protein nusG 49 9e-06
6NUSG_NEIMA (P65591) Transcription antitermination protein nusG 49 9e-06
7NUSG_BACHD (Q9KGE7) Transcription antitermination protein nusG 48 2e-05
8NUSG_SYNY3 (P36265) Transcription antitermination protein nusG 48 3e-05
9NUSG_DEIRA (Q9RSS6) Transcription antitermination protein nusG 47 6e-05
10NUSG_STACA (P36264) Transcription antitermination protein nusG 47 6e-05
11NUSG_STAAW (P0A097) Transcription antitermination protein nusG 47 6e-05
12NUSG_STAAU (P0A098) Transcription antitermination protein nusG 47 6e-05
13NUSG_STAAS (Q6GBV1) Transcription antitermination protein nusG 47 6e-05
14NUSG_STAAR (Q6GJD2) Transcription antitermination protein nusG 47 6e-05
15NUSG_STAAN (P0A096) Transcription antitermination protein nusG 47 6e-05
16NUSG_STAAM (P0A095) Transcription antitermination protein nusG 47 6e-05
17NUSG_STAAC (Q5HID9) Transcription antitermination protein nusG 47 6e-05
18NUSG_STAES (Q8CQ85) Transcription antitermination protein nusG 46 8e-05
19NUSG_STAEQ (Q5HRL6) Transcription antitermination protein nusG 46 8e-05
20NUSG_PASMU (Q9CK84) Transcription antitermination protein nusG 45 2e-04
21NUSG_VIBCH (Q9KV35) Transcription antitermination protein nusG 45 2e-04
22NUSG_PSEAE (Q9HWC4) Transcription antitermination protein nusG 45 2e-04
23NUSG_THEMA (P29397) Transcription antitermination protein nusG 45 2e-04
24NUSG_VIBVU (Q8DD25) Transcription antitermination protein nusG 44 3e-04
25NUSG_STRGR (P36260) Transcription antitermination protein nusG 44 4e-04
26NUSG_STRCO (P36266) Transcription antitermination protein nusG 44 4e-04
27NUSG_YERPE (Q8ZAP0) Transcription antitermination protein nusG 44 5e-04
28NUSG_SHIFL (P0AFG2) Transcription antitermination protein nusG 44 5e-04
29NUSG_SALTY (P0AA02) Transcription antitermination protein nusG 44 5e-04
30NUSG_SALTI (P0AA03) Transcription antitermination protein nusG 44 5e-04
31NUSG_ECOLI (P0AFG0) Transcription antitermination protein nusG 44 5e-04
32NUSG_ECOL6 (P0AA01) Transcription antitermination protein nusG 44 5e-04
33NUSG_ECO57 (P0AFG1) Transcription antitermination protein nusG 44 5e-04
34NUSG_STRVG (P27309) Transcription antitermination protein nusG (... 44 5e-04
35NUSG_VIBPA (Q87KP9) Transcription antitermination protein nusG 44 5e-04
36NUSG_MYCTU (P65589) Transcription antitermination protein nusG 44 5e-04
37NUSG_MYCBO (P65590) Transcription antitermination protein nusG 44 5e-04
38NUSG_HAEIN (P43916) Transcription antitermination protein nusG 43 7e-04
39NUSG_BUCAI (P57151) Transcription antitermination protein nusG 43 9e-04
40NUSG_MYCLE (Q9CBK0) Transcription antitermination protein nusG 43 9e-04
41NUSG_BUCAP (Q8KA65) Transcription antitermination protein nusG 42 0.001
42NUSG_BUCBP (Q89B15) Transcription antitermination protein nusG 42 0.002
43NUSG_XYLFT (Q87A27) Transcription antitermination protein nusG 42 0.002
44NUSG_RICCN (Q92J91) Transcription antitermination protein nusG 42 0.002
45NUSG_LIBAS (P36262) Transcription antitermination protein nusG (... 41 0.003
46NUSG_XYLFA (Q9PA81) Transcription antitermination protein nusG 40 0.006
47NUSG_STRGB (P52852) Transcription antitermination protein nusG 40 0.008
48NUSG_CHLTR (O84322) Transcription antitermination protein nusG 40 0.008
49NUSG_CHLMU (Q9PK75) Transcription antitermination protein nusG 40 0.008
50NUSG_BORBU (O51355) Transcription antitermination protein nusG 40 0.008
51NUSG_HELPJ (Q9ZK20) Transcription antitermination protein nusG 39 0.010
52NUSG_RICPR (P50056) Transcription antitermination protein nusG 39 0.010
53NUSG_HELPY (P55976) Transcription antitermination protein nusG 38 0.022
54NUSG_LACLA (Q9CDV7) Transcription antitermination protein nusG 36 0.083
55NUSG_CAMJE (Q9PI36) Transcription antitermination protein nusG 34 0.41
56CAT2_CLOKL (P38942) 4-hydroxybutyrate coenzyme A transferase (EC... 32 1.2 
>NUSG_AQUAE (O67757) Transcription antitermination protein nusG|
          Length = 248

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 24/54 (44%), Positives = 38/54 (70%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           F  G  V V+ GPF  FTG++ EV  + +K+TV +++FG+ + V+LDFDQ+E +
Sbjct: 195 FEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI 248
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>NUSG_THET8 (P35872) Transcription antitermination protein nusG|
          Length = 184

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 25/51 (49%), Positives = 36/51 (70%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQI 564
           F  G  V V+SGPFA FTG++ E+  +  KV V +T+FG+E+ V+LDF Q+
Sbjct: 131 FREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQV 181
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>NUSG_TREPA (O83264) Transcription antitermination protein nusG|
          Length = 185

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = +1

Query: 409 TFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           TF +G  V ++ GPFA F+G + EV+ +  KV V +T+FG+ + V+L+  Q+EAL
Sbjct: 131 TFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELVQVEAL 185
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>NUSG_BACSU (Q06795) Transcription antitermination protein nusG|
          Length = 177

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           F L  +V V+ GPFA FTGS+ E+     KV V + +FG+E+ V+L+F QI+ L
Sbjct: 124 FELKETVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPVELEFTQIDKL 177
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>NUSG_NEIMB (P65592) Transcription antitermination protein nusG|
          Length = 178

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 23/55 (41%), Positives = 35/55 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           F +G  V V  GPFA F G + EV  +  K+ V + +FG+E+ V+L+F Q+E +N
Sbjct: 124 FEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKIN 178
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>NUSG_NEIMA (P65591) Transcription antitermination protein nusG|
          Length = 178

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 23/55 (41%), Positives = 35/55 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           F +G  V V  GPFA F G + EV  +  K+ V + +FG+E+ V+L+F Q+E +N
Sbjct: 124 FEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKIN 178
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>NUSG_BACHD (Q9KGE7) Transcription antitermination protein nusG|
          Length = 178

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 35/54 (64%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           F L  SV V  GPFA F G++ E+    +K+ V + +FG+E+ V+L+F QIE +
Sbjct: 125 FQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178
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>NUSG_SYNY3 (P36265) Transcription antitermination protein nusG|
          Length = 205

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 21/53 (39%), Positives = 35/53 (66%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           +G  + VLSGPF  F G ++EV  +  K+   +++FG+E+ V+L+F Q+E  N
Sbjct: 153 IGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQVEKQN 205
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>NUSG_DEIRA (Q9RSS6) Transcription antitermination protein nusG|
          Length = 190

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +1

Query: 421 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQI 564
           G  V V SGPFA F+G + EV     KV V +++FG+E+ V+LDF Q+
Sbjct: 141 GDMVRVTSGPFADFSGVVSEVNAPQAKVKVLVSIFGRETPVELDFSQV 188
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>NUSG_STACA (P36264) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAW (P0A097) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAU (P0A098) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAS (Q6GBV1) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAR (Q6GJD2) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAN (P0A096) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAM (P0A095) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAAC (Q5HID9) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIKSGPFANQVGEVQEIETDKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAES (Q8CQ85) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_STAEQ (Q5HRL6) Transcription antitermination protein nusG|
          Length = 182

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +G  V + SGPFA   G + E+     K+TV + +FG+E+ V+++FDQIE L
Sbjct: 131 VGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182
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>NUSG_PASMU (Q9CK84) Transcription antitermination protein nusG|
          Length = 183

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           F  G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E  N
Sbjct: 129 FQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEKTN 183
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>NUSG_VIBCH (Q9KV35) Transcription antitermination protein nusG|
          Length = 181

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 35/55 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           F  G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E L+
Sbjct: 127 FEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKLD 181
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>NUSG_PSEAE (Q9HWC4) Transcription antitermination protein nusG|
          Length = 177

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 33/52 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G +V V+ GPFA F G + EV  +  ++ V + +FG+ + V+L+F Q+E
Sbjct: 124 FEPGETVRVIDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQVE 175
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>NUSG_THEMA (P29397) Transcription antitermination protein nusG|
          Length = 353

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 1/187 (0%)
 Frame = +1

Query: 16  IQVKKRLKSGLISTKSKPLHPGLVFLYCTLNKELHDFIRDTEGCYGFIGATRGSXXXXXX 195
           +    R +  +  TK + L PG VF+   +N E ++F+R      GF+ +          
Sbjct: 213 VDYSTRKEIRIYKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSS---------- 262

Query: 196 XXXXXXAXXXXXXXXXXXXXXXXXXXXXXXLENWNNVGSFSKPVEDSELM-LINXXXXXX 372
                                                G    PV+D E+  ++       
Sbjct: 263 -------------------------------------GGQPVPVKDREMRPILRLAGLEE 285

Query: 373 XXXXXXGASSNDTFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLD 552
                        F +G  V ++SGPF  F G + E+  + +++ V +T+FG+E+ V L 
Sbjct: 286 YEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLH 345

Query: 553 FDQIEAL 573
             ++E +
Sbjct: 346 VSEVEKI 352
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>NUSG_VIBVU (Q8DD25) Transcription antitermination protein nusG|
          Length = 181

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 20/55 (36%), Positives = 36/55 (65%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           + +G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E L+
Sbjct: 127 YEVGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKLD 181
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>NUSG_STRGR (P36260) Transcription antitermination protein nusG|
          Length = 294

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F +G SV V  GPFA    ++ E+   +KKV   + +FG+E+ V+L FDQI+
Sbjct: 241 FEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVELSFDQIQ 292
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>NUSG_STRCO (P36266) Transcription antitermination protein nusG|
          Length = 300

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F +G SV V  GPFA    ++ E+   +KKV   + +FG+E+ V+L FDQI+
Sbjct: 247 FEVGDSVTVTDGPFATLQATINEINADSKKVKGLVEIFGRETPVELSFDQIQ 298
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>NUSG_YERPE (Q8ZAP0) Transcription antitermination protein nusG|
          Length = 180

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 127 FEPGELVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_SHIFL (P0AFG2) Transcription antitermination protein nusG|
          Length = 180

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 127 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_SALTY (P0AA02) Transcription antitermination protein nusG|
          Length = 180

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 127 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_SALTI (P0AA03) Transcription antitermination protein nusG|
          Length = 180

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 127 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_ECOLI (P0AFG0) Transcription antitermination protein nusG|
          Length = 180

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 127 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_ECOL6 (P0AA01) Transcription antitermination protein nusG|
          Length = 180

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 127 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_ECO57 (P0AFG1) Transcription antitermination protein nusG|
          Length = 180

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 127 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 178
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>NUSG_STRVG (P27309) Transcription antitermination protein nusG (Butanolide|
           receptor)
          Length = 299

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 22/52 (42%), Positives = 33/52 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F +G SV V  GPFA    ++ E+   +KKV   + +FG+E+ V+L FDQI+
Sbjct: 246 FEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQIQ 297
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>NUSG_VIBPA (Q87KP9) Transcription antitermination protein nusG|
          Length = 181

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/55 (36%), Positives = 35/55 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           +  G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E L+
Sbjct: 127 YEAGEVVRVNEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKLD 181
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>NUSG_MYCTU (P65589) Transcription antitermination protein nusG|
          Length = 238

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 36/180 (20%), Positives = 66/180 (36%)
 Frame = +1

Query: 34  LKSGLISTKSKPLHPGLVFLYCTLNKELHDFIRDTEGCYGFIGATRGSXXXXXXXXXXXX 213
           +K+G     ++ + PG + +   L  +    +R+T G  GF+GAT               
Sbjct: 92  IKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFL 151

Query: 214 AXXXXXXXXXXXXXXXXXXXXXXXLENWNNVGSFSKPVEDSELMLINXXXXXXXXXXXXG 393
                                   LE         +PV + +                  
Sbjct: 152 LPRGSTRKAAKGAASTAAAAEAGGLE---------RPVVEVD------------------ 184

Query: 394 ASSNDTFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
                 + +G SV V+ GPFA    ++ EV  + +K+ V +++FG+E+ V+L F Q+  +
Sbjct: 185 ------YEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238
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>NUSG_MYCBO (P65590) Transcription antitermination protein nusG|
          Length = 238

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 36/180 (20%), Positives = 66/180 (36%)
 Frame = +1

Query: 34  LKSGLISTKSKPLHPGLVFLYCTLNKELHDFIRDTEGCYGFIGATRGSXXXXXXXXXXXX 213
           +K+G     ++ + PG + +   L  +    +R+T G  GF+GAT               
Sbjct: 92  IKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFL 151

Query: 214 AXXXXXXXXXXXXXXXXXXXXXXXLENWNNVGSFSKPVEDSELMLINXXXXXXXXXXXXG 393
                                   LE         +PV + +                  
Sbjct: 152 LPRGSTRKAAKGAASTAAAAEAGGLE---------RPVVEVD------------------ 184

Query: 394 ASSNDTFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
                 + +G SV V+ GPFA    ++ EV  + +K+ V +++FG+E+ V+L F Q+  +
Sbjct: 185 ------YEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI 238
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>NUSG_HAEIN (P43916) Transcription antitermination protein nusG|
          Length = 185

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 19/52 (36%), Positives = 34/52 (65%)
 Frame = +1

Query: 421 GASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEALN 576
           G  V V  GPFA F G++ EV  +  ++ V +++FG+ + V+L+F Q+E ++
Sbjct: 134 GEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSMFGRATPVELEFGQVEKIH 185
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>NUSG_BUCAI (P57151) Transcription antitermination protein nusG|
          Length = 181

 Score = 42.7 bits (99), Expect = 9e-04
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  + V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 128 FEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVE 179
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>NUSG_MYCLE (Q9CBK0) Transcription antitermination protein nusG|
          Length = 228

 Score = 42.7 bits (99), Expect = 9e-04
 Identities = 19/54 (35%), Positives = 35/54 (64%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           + +G SV V+ GPFA    ++ EV  + +K+ V +++FG+E+ V+L F Q+  +
Sbjct: 175 YEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFSQVSKI 228
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>NUSG_BUCAP (Q8KA65) Transcription antitermination protein nusG|
          Length = 181

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  + V  GPFA F G + EV  +  ++ V +++FG+ + V+LDF Q+E
Sbjct: 128 FEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFRQVE 179
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>NUSG_BUCBP (Q89B15) Transcription antitermination protein nusG|
          Length = 181

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 19/52 (36%), Positives = 33/52 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G +V V  GPF+ F G + EV  +  ++ V +++FG+ + V+LDF Q++
Sbjct: 128 FEPGETVRVNDGPFSDFNGIVEEVDYEKNRLKVSVSIFGRSTPVELDFSQVK 179
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>NUSG_XYLFT (Q87A27) Transcription antitermination protein nusG|
          Length = 185

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V+ GPF  F G + EV  +  ++ V + +FG+ + VDLDF Q++
Sbjct: 132 FEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQVQ 183
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>NUSG_RICCN (Q92J91) Transcription antitermination protein nusG|
          Length = 192

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 17/58 (29%), Positives = 37/58 (63%)
 Frame = +1

Query: 394 ASSNDTFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           A ++  + +G  V V  GPF  F G++ E+ ++  ++ V + +FGK + ++L+F+Q++
Sbjct: 132 AKNSKLYEVGEIVTVTDGPFETFMGTVEEIDQEKNRLKVSVAIFGKATPIELNFNQVK 189
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>NUSG_LIBAS (P36262) Transcription antitermination protein nusG (Fragment)|
          Length = 70

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           F +G  V V  GPFA F G +  V  +  +V V++ +FG+ + V+L ++Q+E +
Sbjct: 16  FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEKI 69
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>NUSG_XYLFA (Q9PA81) Transcription antitermination protein nusG|
          Length = 185

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F  G  V V+ GPF  F G + EV  +  ++ V + +FG+ + VDL+F Q++
Sbjct: 132 FEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLEFGQVQ 183
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>NUSG_STRGB (P52852) Transcription antitermination protein nusG|
          Length = 309

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 23/52 (44%), Positives = 33/52 (63%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           F +GASV V  GPFA    ++ E+   +KKV   + +FG E+ V+L FDQI+
Sbjct: 257 FEVGASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSFDQIQ 307
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>NUSG_CHLTR (O84322) Transcription antitermination protein nusG|
          Length = 182

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 391 GASSNDTFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFV-DLDFDQIE 567
           G      F +G+ V +  G F  F G + EV     +++V +++FG+E+ V DL+F Q+E
Sbjct: 114 GVVQKHKFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVE 173
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>NUSG_CHLMU (Q9PK75) Transcription antitermination protein nusG|
          Length = 182

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 391 GASSNDTFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFV-DLDFDQIE 567
           G      F +G+ V +  G F  F G + EV     +++V +++FG+E+ V DL+F Q+E
Sbjct: 114 GVVQKHKFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVE 173
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>NUSG_BORBU (O51355) Transcription antitermination protein nusG|
          Length = 184

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           F  G  V +  GPF  F G +  +  + KK+ V + +FG+ + V++DF  IE +
Sbjct: 131 FEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQHIEKI 184
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>NUSG_HELPJ (Q9ZK20) Transcription antitermination protein nusG|
          Length = 176

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 16/54 (29%), Positives = 35/54 (64%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           F  G  V V+ GPFA FT ++ E   +++K+ + +++FG+ + +++ + Q+E +
Sbjct: 122 FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKI 175
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>NUSG_RICPR (P50056) Transcription antitermination protein nusG|
          Length = 192

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 16/58 (27%), Positives = 36/58 (62%)
 Frame = +1

Query: 394 ASSNDTFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           A ++  + +G  V V  GPF  F G++  + +   ++ V +++FGK + ++L+F+Q++
Sbjct: 132 AKNSKLYEVGEIVTVTDGPFETFMGTVEAIDKARNRLKVSVSIFGKATPIELNFNQVK 189
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>NUSG_HELPY (P55976) Transcription antitermination protein nusG|
          Length = 176

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 16/54 (29%), Positives = 34/54 (62%)
 Frame = +1

Query: 412 FTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           F  G  V V+ GPFA FT ++ E   +++K+ + +++FG+ + +++   Q+E +
Sbjct: 122 FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRNTPIEILHSQVEKI 175
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>NUSG_LACLA (Q9CDV7) Transcription antitermination protein nusG|
          Length = 185

 Score = 36.2 bits (82), Expect = 0.083
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 418 LGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIE 567
           +G  V ++ G F+GF   + E+     K+T+ + +FG+ + V+LD  QIE
Sbjct: 134 VGKRVRIVDGAFSGFEAPITEI--NGDKLTLTVDMFGRATPVELDMHQIE 181
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>NUSG_CAMJE (Q9PI36) Transcription antitermination protein nusG|
          Length = 177

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 409 TFTLGASVHVLSGPFAGFTGSLLEVIRKNKKVTVQMTLFGKESFVDLDFDQIEAL 573
           +F  G +V +  GPFA FT  + E       + + +++FG+ + V++ + Q+E +
Sbjct: 122 SFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIFGRSTPVEILYSQVEKI 176
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>CAT2_CLOKL (P38942) 4-hydroxybutyrate coenzyme A transferase (EC 2.8.3.-)|
          Length = 429

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 22  VKKRLKSGLISTKSKPLHPG-LVFLYCTLNKELHDFIRD 135
           V + +K+G+I+ K K LHPG +V  +    K+L+DF+ +
Sbjct: 244 VMELVKAGVINNKKKTLHPGKIVVTFLMGTKKLYDFVNN 282


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,006,989
Number of Sequences: 219361
Number of extensions: 1095344
Number of successful extensions: 2669
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2668
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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