ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags23a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 6e-50
2gb|BT009227.1| Triticum aestivum clone wle1n.pk0091.d8:fis, full... 72 2e-09
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.9
5gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.9
6gb|AC006042.2| Homo sapiens BAC clone RP11-505D17 from 7, comple... 42 1.9
7ref|XM_567939.1| Cryptococcus neoformans var. neoformans JEC21 c... 42 1.9
8ref|XM_572538.1| Cryptococcus neoformans var. neoformans JEC21 c... 42 1.9
9gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome... 42 1.9
10gb|AC113889.6| Rattus norvegicus 2 BAC CH230-337K18 (Children's ... 42 1.9
11emb|BX248127.9| Zebrafish DNA sequence from clone CH211-117N7, c... 42 1.9
12emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, co... 42 1.9
13ref|NM_172067.1| Rattus norvegicus spondin 1 (Spon1), mRNA 40 7.6
14gb|M88469.1|RATFSAA Rattus norvegicus f-spondin mRNA, complete cds 40 7.6
15gb|AC140340.3| Mus musculus BAC clone RP24-260O19 from chromosom... 40 7.6
16gb|AC112142.4| Mus musculus BAC clone RP23-4P23 from chromosome ... 40 7.6
17gb|AY345124.1| Trichoplusia ni peritrophic membrane chitin bindi... 40 7.6
18emb|CR318646.27| Zebrafish DNA sequence from clone DKEY-83F18 in... 40 7.6
19gb|AC123798.5| Mus musculus BAC clone RP24-334O8 from chromosome... 40 7.6
20ref|XM_675377.1| Plasmodium berghei strain ANKA adapter-related ... 40 7.6
21gb|AC153001.7| Medicago truncatula clone mth2-95k24, complete se... 40 7.6
22gb|AC135606.17| Medicago truncatula clone mth2-10j1, complete se... 40 7.6
23gb|AC124961.19| Medicago truncatula clone mth2-18l7, complete se... 40 7.6
24emb|Z96811.2|HS52D1 Human DNA sequence from clone RP1-52D1 on ch... 40 7.6
25gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 7.6
26gb|AC152819.6| Mus musculus BAC clone RP24-572P24 from chromosom... 40 7.6
27gb|AE014181.1| Mus musculus piebald deletion region section 9 of... 40 7.6
28gb|BC099001.1| Xenopus laevis cDNA clone IMAGE:5084748, partial cds 40 7.6
29emb|BX649590.15| Zebrafish DNA sequence from clone CH211-143I6 i... 40 7.6
30gb|AC146758.11| Medicago truncatula clone mth2-64b11, complete s... 40 7.6
31gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map... 40 7.6
32gb|AC023134.5| Homo sapiens chromosome 5 clone RP11-463C5, compl... 40 7.6
33gb|AC016568.5| Homo sapiens chromosome 5 clone CTC-566C5, comple... 40 7.6
34gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, comp... 40 7.6
35ref|XM_579693.1| PREDICTED: Rattus norvegicus spondin 1 (Spon1),... 40 7.6
36emb|CR318630.14| Zebrafish DNA sequence from clone CH211-225K7 i... 40 7.6
37gb|AC133948.3| Mus musculus BAC clone RP24-226H19 from 10, compl... 40 7.6
38gb|BC107655.1| Rattus norvegicus spondin 1, mRNA (cDNA clone MGC... 40 7.6
39dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 7.6
40gb|AC101299.16| Mus musculus chromosome 1, clone RP23-103M17, co... 40 7.6
41emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, ... 40 7.6 
>dbj|AK102989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116D04, full
           insert sequence
          Length = 1232

 Score =  206 bits (104), Expect = 6e-50
 Identities = 281/340 (82%)
 Strand = Plus / Plus

                                                                       
Query: 140 ctccgcagcccctacgacctggaagactaccagattggcatgctctttggtgcatttctt 199
           ||||||||| |||||||| | || ||||| || || ||||||||||||||||| ||||| 
Sbjct: 607 ctccgcagcgcctacgacttcgaggactatcaaatcggcatgctctttggtgcgtttctc 666

                                                                       
Query: 200 ggatgtgttggctgttaccaactgtggaagacggcgccttccatatttgttgatgccttc 259
           |||| ||| || || ||||| ||||||||| |||| |||||| | || ||||||||   |
Sbjct: 667 ggatatgtcgggtgctaccagctgtggaaggcggctccttccgtcttcgttgatgctgcc 726

                                                                       
Query: 260 cttgcattcatcttctacaagctcagtgttgtgtcctcagagttacatagaaacgacaag 319
           ||||| ||  | || ||||||||||| ||||||||||||||| | ||  |  |   ||||
Sbjct: 727 cttgcctttgtgttttacaagctcagcgttgtgtcctcagagctgcaccggcagcgcaag 786

                                                                       
Query: 320 tccaacagcttgattacgcggctgaaattcggtaccatacttatcatggtttggaaggac 379
            | ||||||||||| |||||||| |||||||| ||||||||||||||||||  ||| |||
Sbjct: 787 acaaacagcttgatcacgcggcttaaattcgggaccatacttatcatggttatgaaagac 846

                                                                       
Query: 380 atcaagaaaaactatgtcctcctggatgttgttaggatgccggttttcctcctctacatc 439
           |||||||| |||||||| ||||||||  || |||| |||||||||||| |||||||||| 
Sbjct: 847 atcaagaagaactatgtactcctggacattattagaatgccggttttcttcctctacatt 906

                                                   
Query: 440 tgtgcattcctgttcgatgttgctggcgtgaagaattatg 479
           ||||| ||| | ||||||||||||||  ||||||| ||||
Sbjct: 907 tgtgcgttcgtattcgatgttgctggtatgaagaagtatg 946



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 506  aatctgatgaaaaccagaggtgggattcaagagatatgcaggattatgtggt 557
            |||||| ||||| | |||||||| || ||||| ||||  |||||||||||||
Sbjct: 973  aatctgctgaaatctagaggtggcatacaagaaatatataggattatgtggt 1024
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>gb|BT009227.1| Triticum aestivum clone wle1n.pk0091.d8:fis, full insert mRNA
           sequence
          Length = 1424

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 152 tacgacctggaagactaccagattggcatgctctttggtg 191
           |||||||| |||||||||||||||||||||||||||||||
Sbjct: 711 tacgaccttgaagactaccagattggcatgctctttggtg 750
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 353      accatacttatcatggtttggaaggacatcaagaaaaactatgtcctcctgga 405
                ||||||||||||||||||  ||| ||||||||||| |||||||| ||||||||
Sbjct: 18890162 accatacttatcatggttatgaaagacatcaagaagaactatgtactcctgga 18890214



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                            
Query: 416      atgccggttttcctcctctacatctgtgcattcctgttcgatgttgctggcgtgaagaat 475
                |||||||||||| |||||||||| ||||| ||| | ||||||||||||||  ||||||| 
Sbjct: 18891485 atgccggttttcttcctctacatttgtgcgttcgtattcgatgttgctggtatgaagaag 18891544

                    
Query: 476      tatg 479
                ||||
Sbjct: 18891545 tatg 18891548



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 132/166 (79%)
 Strand = Plus / Plus

                                                                            
Query: 188      ggtgcatttcttggatgtgttggctgttaccaactgtggaagacggcgccttccatattt 247
                ||||| ||||| |||| ||| || || ||||| ||||||||| |||| |||||| | || 
Sbjct: 18889599 ggtgcgtttctcggatatgtcgggtgctaccagctgtggaaggcggctccttccgtcttc 18889658

                                                                            
Query: 248      gttgatgccttccttgcattcatcttctacaagctcagtgttgtgtcctcagagttacat 307
                ||||||||   |||||| ||  | || ||||||||||| ||||||||||||||| | || 
Sbjct: 18889659 gttgatgctgcccttgcctttgtgttttacaagctcagcgttgtgtcctcagagctgcac 18889718

                                                              
Query: 308      agaaacgacaagtccaacagcttgattacgcggctgaaattcggta 353
                 |  |   |||| | ||||||||||| |||||||| ||||||||||
Sbjct: 18889719 cggcagcgcaagacaaacagcttgatcacgcggcttaaattcggta 18889764



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                    
Query: 140      ctccgcagcccctacgacctggaagactaccagattggcatgctctttggtg 191
                ||||||||| |||||||| | || ||||| || || ||||||||||||||||
Sbjct: 18889443 ctccgcagcgcctacgacttcgaggactatcaaatcggcatgctctttggtg 18889494



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 506      aatctgatgaaaaccagaggtgggattcaagagatatgcaggattatgtggt 557
                |||||| ||||| | |||||||| || ||||| ||||  |||||||||||||
Sbjct: 18891575 aatctgctgaaatctagaggtggcatacaagaaatatataggattatgtggt 18891626
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>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete
             sequence
          Length = 906719

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    gcgtcagtaagaagaagaggg 59
             |||||||||||||||||||||
Sbjct: 33313 gcgtcagtaagaagaagaggg 33293
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
             sequence
          Length = 1194300

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    gcgtcagtaagaagaagaggg 59
             |||||||||||||||||||||
Sbjct: 29679 gcgtcagtaagaagaagaggg 29699
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>gb|AC006042.2| Homo sapiens BAC clone RP11-505D17 from 7, complete sequence
          Length = 178361

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 43     cagtaagaagaagagggacgaggca 67
              ||||||||||| |||||||||||||
Sbjct: 170262 cagtaagaagatgagggacgaggca 170238
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>ref|XM_567939.1| Cryptococcus neoformans var. neoformans JEC21 chaperone regulator
          (CNL03780) partial mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 39 gcgtcagtaagaagaagaggg 59
          |||||||||||||||||||||
Sbjct: 34 gcgtcagtaagaagaagaggg 14
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>ref|XM_572538.1| Cryptococcus neoformans var. neoformans JEC21 chaperone regulator
          (CNH03780) partial mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 39 gcgtcagtaagaagaagaggg 59
          |||||||||||||||||||||
Sbjct: 34 gcgtcagtaagaagaagaggg 14
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>gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome 14, complete sequence
          Length = 185254

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 292    gtcctcagagttacatagaaa 312
              |||||||||||||||||||||
Sbjct: 116646 gtcctcagagttacatagaaa 116626
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>gb|AC113889.6| Rattus norvegicus 2 BAC CH230-337K18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 148510

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 245    tttgttgatgccttccttgcattcatctt 273
              ||||||||||| ||||||||||| |||||
Sbjct: 130017 tttgttgatgcattccttgcattaatctt 129989
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>emb|BX248127.9| Zebrafish DNA sequence from clone CH211-117N7, complete sequence
          Length = 173163

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 500   tttgtgaatctgatgaaaacc 520
             |||||||||||||||||||||
Sbjct: 96063 tttgtgaatctgatgaaaacc 96043
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>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence
          Length = 208909

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 500    tttgtgaatctgatgaaaacc 520
              |||||||||||||||||||||
Sbjct: 155627 tttgtgaatctgatgaaaacc 155607
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>ref|NM_172067.1| Rattus norvegicus spondin 1 (Spon1), mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 362  atcatggtttggaaggacatcaag 385
            ||||||||| ||||||||||||||
Sbjct: 1184 atcatggttaggaaggacatcaag 1161
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>gb|M88469.1|RATFSAA Rattus norvegicus f-spondin mRNA, complete cds
          Length = 4029

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 362  atcatggtttggaaggacatcaag 385
            ||||||||| ||||||||||||||
Sbjct: 1184 atcatggttaggaaggacatcaag 1161
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>gb|AC140340.3| Mus musculus BAC clone RP24-260O19 from chromosome 14, complete
             sequence
          Length = 168454

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   atgtcctcctggatgttgtt 412
             ||||||||||||||||||||
Sbjct: 40005 atgtcctcctggatgttgtt 39986
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>gb|AC112142.4| Mus musculus BAC clone RP23-4P23 from chromosome 14, complete sequence
          Length = 230847

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    atgtcctcctggatgttgtt 412
              ||||||||||||||||||||
Sbjct: 149863 atgtcctcctggatgttgtt 149844
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>gb|AY345124.1| Trichoplusia ni peritrophic membrane chitin binding protein 1 (CBP1)
            mRNA, complete cds
          Length = 3679

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  ctttggtgcatttcttggat 203
            ||||||||||||||||||||
Sbjct: 3319 ctttggtgcatttcttggat 3300
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>emb|CR318646.27| Zebrafish DNA sequence from clone DKEY-83F18 in linkage group 22,
             complete sequence
          Length = 224271

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   tggtgtattttgtgaatctg 511
             ||||||||||||||||||||
Sbjct: 27759 tggtgtattttgtgaatctg 27778
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>gb|AC123798.5| Mus musculus BAC clone RP24-334O8 from chromosome 3, complete sequence
          Length = 168467

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    aagaaaaactatgtcctcct 402
              ||||||||||||||||||||
Sbjct: 106497 aagaaaaactatgtcctcct 106478
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>ref|XM_675377.1| Plasmodium berghei strain ANKA adapter-related protein,
            (PB000993.00.0) partial mRNA
          Length = 2601

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 499  ttttgtgaatctgatgaaaa 518
            ||||||||||||||||||||
Sbjct: 1624 ttttgtgaatctgatgaaaa 1643
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>gb|AC153001.7| Medicago truncatula clone mth2-95k24, complete sequence
          Length = 100724

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   gccttccatatttgttgatg 254
             ||||||||||||||||||||
Sbjct: 61619 gccttccatatttgttgatg 61600
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>gb|AC135606.17| Medicago truncatula clone mth2-10j1, complete sequence
          Length = 118120

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   gccttccatatttgttgatg 254
             ||||||||||||||||||||
Sbjct: 21541 gccttccatatttgttgatg 21522
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>gb|AC124961.19| Medicago truncatula clone mth2-18l7, complete sequence
          Length = 106560

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   gccttccatatttgttgatg 254
             ||||||||||||||||||||
Sbjct: 40856 gccttccatatttgttgatg 40875
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>emb|Z96811.2|HS52D1 Human DNA sequence from clone RP1-52D1 on chromosome Xq21, complete
             sequence
          Length = 148691

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   aaggacatcaagaaaaacta 393
             ||||||||||||||||||||
Sbjct: 85026 aaggacatcaagaaaaacta 85045
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 388     aaactatgtcctcctggatg 407
               ||||||||||||||||||||
Sbjct: 2125090 aaactatgtcctcctggatg 2125109
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>gb|AC152819.6| Mus musculus BAC clone RP24-572P24 from chromosome 10, complete sequence
          Length = 185665

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    atgtgttggctgttaccaac 221
              ||||||||||||||||||||
Sbjct: 107145 atgtgttggctgttaccaac 107164
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>gb|AE014181.1| Mus musculus piebald deletion region section 9 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    atgtcctcctggatgttgtt 412
              ||||||||||||||||||||
Sbjct: 248157 atgtcctcctggatgttgtt 248138
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>gb|BC099001.1| Xenopus laevis cDNA clone IMAGE:5084748, partial cds
          Length = 3928

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 422 gttttcctcctctacatctgtgcattcc 449
           |||||||||||||  |||||||||||||
Sbjct: 808 gttttcctcctctgaatctgtgcattcc 835
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>emb|BX649590.15| Zebrafish DNA sequence from clone CH211-143I6 in linkage group 9,
             complete sequence
          Length = 120653

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     cggcacgaggctcccccggc 21
             ||||||||||||||||||||
Sbjct: 40461 cggcacgaggctcccccggc 40442
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>gb|AC146758.11| Medicago truncatula clone mth2-64b11, complete sequence
          Length = 111089

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   tccatatttgttgatgccttcctt 262
             |||||||||| |||||||||||||
Sbjct: 14220 tccatatttggtgatgccttcctt 14197
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>gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete
             sequence
          Length = 125045

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   cttccatatttgttgatgcc 256
             ||||||||||||||||||||
Sbjct: 39545 cttccatatttgttgatgcc 39564
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>gb|AC023134.5| Homo sapiens chromosome 5 clone RP11-463C5, complete sequence
          Length = 172805

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    tgtattttgtgaatctgatg 514
              ||||||||||||||||||||
Sbjct: 159476 tgtattttgtgaatctgatg 159495
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>gb|AC016568.5| Homo sapiens chromosome 5 clone CTC-566C5, complete sequence
          Length = 220932

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   tgtattttgtgaatctgatg 514
             ||||||||||||||||||||
Sbjct: 87203 tgtattttgtgaatctgatg 87184
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>gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, complete sequence
          Length = 158094

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 358   acttatcatggtttggaaggacat 381
             |||||||||| |||||||||||||
Sbjct: 56888 acttatcatgttttggaaggacat 56911
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>ref|XM_579693.1| PREDICTED: Rattus norvegicus spondin 1 (Spon1), mRNA
          Length = 4031

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 362  atcatggtttggaaggacatcaag 385
            ||||||||| ||||||||||||||
Sbjct: 1185 atcatggttaggaaggacatcaag 1162
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>emb|CR318630.14| Zebrafish DNA sequence from clone CH211-225K7 in linkage group 22,
            complete sequence
          Length = 64785

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 492  tggtgtattttgtgaatctg 511
            ||||||||||||||||||||
Sbjct: 3485 tggtgtattttgtgaatctg 3466
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>gb|AC133948.3| Mus musculus BAC clone RP24-226H19 from 10, complete sequence
          Length = 168206

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  atgtgttggctgttaccaac 221
            ||||||||||||||||||||
Sbjct: 7444 atgtgttggctgttaccaac 7463
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>gb|BC107655.1| Rattus norvegicus spondin 1, mRNA (cDNA clone MGC:124557
            IMAGE:7935103), complete cds
          Length = 4109

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 362  atcatggtttggaaggacatcaag 385
            ||||||||| ||||||||||||||
Sbjct: 1261 atcatggttaggaaggacatcaag 1238
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     catgctctttggtgcatttc 197
               ||||||||||||||||||||
Sbjct: 1412794 catgctctttggtgcatttc 1412775
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>gb|AC101299.16| Mus musculus chromosome 1, clone RP23-103M17, complete sequence
          Length = 164091

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   tcctggatgttgttaggatg 418
             ||||||||||||||||||||
Sbjct: 77095 tcctggatgttgttaggatg 77114
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>emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, 14D7, C1230, 11E7, F1096,
             A12197, 12G8, A09100; complete sequence bases 1..217657
          Length = 217657

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 500   tttgtgaatctgatgaaaac 519
             ||||||||||||||||||||
Sbjct: 89476 tttgtgaatctgatgaaaac 89495


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,502,293
Number of Sequences: 3902068
Number of extensions: 4502293
Number of successful extensions: 81802
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81651
Number of HSP's gapped (non-prelim): 150
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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