ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags22k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRI2_ARATH (Q84WJ2) Probable DNA primase large subunit (EC 2.7.7.-) 215 5e-56
2PRI2_HUMAN (P49643) DNA primase large subunit (EC 2.7.7.-) (DNA ... 108 8e-24
3PRI2_MOUSE (P33610) DNA primase large subunit (EC 2.7.7.-) (DNA ... 105 7e-23
4PRI2_SCHPO (O74761) DNA primase large subunit (EC 2.7.7.-) 105 7e-23
5PRI2_RAT (O89044) DNA primase large subunit (EC 2.7.7.-) (DNA pr... 105 9e-23
6PRI2_DROME (Q9VPH2) DNA primase large subunit (EC 2.7.7.-) 100 4e-21
7PRI2_YEAST (P20457) DNA primase large subunit (EC 2.7.7.-) (DNA ... 82 8e-16
8PRI2_NEUCR (Q8NIZ4) Probable DNA primase large subunit (EC 2.7.7.-) 78 2e-14
9PRI2_CAEEL (O02334) DNA primase large subunit (EC 2.7.7.-) 75 8e-14
10PYRG_BUCAI (P57491) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 33 0.34
11POLG_SBMVN (P21231) Genome polyprotein [Contains: P1 proteinase ... 32 1.3
12POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase ... 32 1.3
13RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger pro... 30 2.9
14PHZB_PSECL (Q51519) Anthranilate synthase, phenazine specific (E... 30 3.7
15KPPR1_RALEU (P19924) Phosphoribulokinase, plasmid (EC 2.7.1.19) ... 30 3.7
16CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibr... 30 3.7
17TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit T... 30 3.7
18KLK9_RAT (P07647) Submandibular glandular kallikrein-9 precursor... 30 3.7
19POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein ... 30 4.9
20YR865_MIMIV (Q5UP18) Hypothetical protein R865 29 6.4
21PRKDC_CANFA (Q8WN22) DNA-dependent protein kinase catalytic subu... 29 8.3
22PELI3_MOUSE (Q8BXR6) Protein pellino homolog 3 (Pellino-3) 29 8.3
23ECM5_YEAST (Q03214) Extracellular matrix protein 5 29 8.3
24TUSC_PASMU (Q9CL88) Protein tusC homolog 29 8.3

>PRI2_ARATH (Q84WJ2) Probable DNA primase large subunit (EC 2.7.7.-)|
          Length = 454

 Score =  215 bits (548), Expect = 5e-56
 Identities = 106/165 (64%), Positives = 136/165 (82%), Gaps = 1/165 (0%)
 Frame = +2

Query: 11  MEKLVSELWKAHMRHQDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRL 190
           M+ LV  LWK HMR  + +E +NKDIISHFVLRLVYCR++EL+KWFLSME  LFR+RFRL
Sbjct: 64  MDDLVETLWKEHMRLSNVSEMINKDIISHFVLRLVYCRSDELKKWFLSMETALFRHRFRL 123

Query: 191 ESPESQRLLMSEFQLPYKALPHSEFEAVKDKLSQVARSISQ-STSVESVFFKVPFEEVPD 367
           +  E QR ++ EF LPYKA+  +E E++K++L  VARS  Q S+ VE++++KVPFEEVPD
Sbjct: 124 KKIEEQRAIVGEFGLPYKAVIGAELESLKERLGLVARSHGQISSDVENIYYKVPFEEVPD 183

Query: 368 LVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWT 502
           LVA+RRV L KG+A+VA +Q+VSLVVTQFR ++SKAL+LTNRKWT
Sbjct: 184 LVASRRVLLQKGFAFVAGTQLVSLVVTQFRSHLSKALILTNRKWT 228



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>PRI2_HUMAN (P49643) DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa|
           subunit) (p58)
          Length = 509

 Score =  108 bits (270), Expect = 8e-24
 Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 4/167 (2%)
 Frame = +2

Query: 17  KLVSELWKAHMRH----QDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRF 184
           KL SEL K    +    +D  E   +D ISHF+LRL YC++EELR+WF+  E  L R+RF
Sbjct: 73  KLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRF 132

Query: 185 RLESPESQRLLMSEFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVP 364
            +   +  +  + + QL ++A+   E    + ++   + S+S         +K+PF +  
Sbjct: 133 SILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADAL 192

Query: 365 DLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTA 505
           DL   R+V+L  G+AYV +  +V++++ +FR  +SKAL LT R   A
Sbjct: 193 DLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPA 239



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>PRI2_MOUSE (P33610) DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa|
           subunit) (p58)
          Length = 505

 Score =  105 bits (262), Expect = 7e-23
 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
 Frame = +2

Query: 17  KLVSELWKAHMRH----QDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRF 184
           KL +E+ K    +    +D  E   +D ISHF+LRL YC++E+LR+WF+  E  L R+RF
Sbjct: 73  KLEAEIRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRF 132

Query: 185 RLESPESQRLLMSEFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVP 364
            +   +  +  + +  L ++A+   E    +  +   + S+S         +KVPF +  
Sbjct: 133 SILPKDKVQSFLKDSHLHFEAISDEEKTLREQDIMASSPSLSGIKLESESVYKVPFADAL 192

Query: 365 DLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTA 505
           DL   R+V+L  G+AYV +  +V++++ +FR  +SKAL LT R   A
Sbjct: 193 DLFRGRKVYLEDGFAYVPLKDIVAIILNEFRATLSKALALTARSLPA 239



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>PRI2_SCHPO (O74761) DNA primase large subunit (EC 2.7.7.-)|
          Length = 459

 Score =  105 bits (262), Expect = 7e-23
 Identities = 60/140 (42%), Positives = 82/140 (58%)
 Frame = +2

Query: 68  ETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEFQLPYKA 247
           E   KD  SHF+LRL + R++ELR  FL  E+TLFR+RF  E    ++  +      +++
Sbjct: 102 EERRKDHYSHFILRLAFSRSDELRIRFLRAESTLFRFRFVNEETRERQAFIDSLDFQWES 161

Query: 248 LPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRRVFLSKGYAYVAMSQ 427
           +   E +   +KL    ++ SQ       FFKVPF +VPDLV  R VF+ KGYAYV  S+
Sbjct: 162 VSQEEKDVFYEKL----QASSQRNIENESFFKVPFFKVPDLVERRAVFVHKGYAYVPFSE 217

Query: 428 VVSLVVTQFRCNISKALVLT 487
            VSLVV +F  N+ KAL  T
Sbjct: 218 QVSLVVEEFEENLKKALEST 237



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>PRI2_RAT (O89044) DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa|
           subunit) (p58)
          Length = 507

 Score =  105 bits (261), Expect = 9e-23
 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
 Frame = +2

Query: 17  KLVSELWKAHMRH----QDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRF 184
           KL +E+ K    +    +D  E   +D ISHF+LRL YC++E+LR+WF+  E  L R+RF
Sbjct: 73  KLEAEIRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRF 132

Query: 185 RLESPESQRLLMSEFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVP 364
            +   +  +  + +  L ++A+   E    +  +   + S+S         +KVPF +  
Sbjct: 133 SILPKDKVQSFLKDTHLHFEAISDEEKTLREQDIMASSPSLSGVRWESESVYKVPFADAL 192

Query: 365 DLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTA 505
           DL   R+V+L  G+AYV +  +V++++ +FR  +SKAL LT R   A
Sbjct: 193 DLFRGRKVYLEDGFAYVPLKDIVAIILNEFRATLSKALALTARSLPA 239



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>PRI2_DROME (Q9VPH2) DNA primase large subunit (EC 2.7.7.-)|
          Length = 533

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
 Frame = +2

Query: 50  RHQDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEF 229
           +H+   +T  +D +SHF+LRL YCR+E+L +WF++ E  LFRY+F   S    +  +   
Sbjct: 100 KHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFAALSSFEVKQFLEAN 159

Query: 230 QLPYKALPHSEFEAVKDKL--SQVARSISQSTSVESVFFKVPFEEVPDLVANRRVFLSKG 403
                 L  ++ + VKD L  S V +S+++   ++  F+KVPF +V DLV  RR FL  G
Sbjct: 160 GFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLD--FYKVPFTQVLDLVRGRRCFLKAG 217

Query: 404 YAYVAMSQVVSLVVTQFRCNISKAL 478
           YAYV    +VSLV T+ +  I + L
Sbjct: 218 YAYVNTHDLVSLVGTKQQDEIEQGL 242



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>PRI2_YEAST (P20457) DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa|
           subunit) (p58)
          Length = 528

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 15/155 (9%)
 Frame = +2

Query: 68  ETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEFQLPYKA 247
           E   KD  SHF+LRL +CR++ELR+ F+  E  LF+ RF + +   Q   +    LP   
Sbjct: 122 EDRKKDYYSHFILRLCFCRSKELREKFVRAETFLFKIRFNMLTSTDQTKFVQSLDLPLLQ 181

Query: 248 LPHSEFEAVKDKLSQVARSISQSTSV---------------ESVFFKVPFEEVPDLVANR 382
              +E +A  +   Q+ +++S S                  +  F K+PFE V +LV NR
Sbjct: 182 FISNEEKA--ELSHQLYQTVSASLQFQLNLNEEHQRKQYFQQEKFIKLPFENVIELVGNR 239

Query: 383 RVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLT 487
            VFL  GYAY+   Q ++L+  +F   +++ L+ T
Sbjct: 240 LVFLKDGYAYLPQFQQLNLLSNEFASKLNQELIKT 274



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>PRI2_NEUCR (Q8NIZ4) Probable DNA primase large subunit (EC 2.7.7.-)|
          Length = 513

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
 Frame = +2

Query: 80  KDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEFQLPYKALPHS 259
           KD  SHF+LRL +  TE+LR+ F  +E  LFR R   +    +   ++   L ++ +   
Sbjct: 111 KDHYSHFILRLAFASTEDLRRRFTRVETMLFRMRLNADDGRERAAFINSLNLDWETVSDE 170

Query: 260 EFEAVKDKLSQVA---------RSISQSTSVESVFFKVPFEEVPDLVANRRVFLSKGYAY 412
           E   +  +L+  A         +   Q    +  + KV +  VP+LV  RRVFL +GYAY
Sbjct: 171 EKRELAAELAATASFGGYKKGQQQQQQYEEDQQTWCKVSWLRVPELVEQRRVFLRQGYAY 230

Query: 413 VAMSQVVSLVVTQFRCNISKALVLTNR 493
           V   +  ++VV++F   + + L LT R
Sbjct: 231 VPAREQQAMVVSEFSSRLERQLELTAR 257



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>PRI2_CAEEL (O02334) DNA primase large subunit (EC 2.7.7.-)|
          Length = 503

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
 Frame = +2

Query: 53  HQDPA-ETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEF 229
           HQ+   E   +D I HF+LRL +CRT E +KW   +E    R+R R E  +     ++  
Sbjct: 108 HQEEVYELWRRDNIGHFILRLAFCRTPENQKWLTQIEGDFLRFRLRQEREQVLDSALANV 167

Query: 230 QLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRRVFLSKGYA 409
               + L ++E +A+ + L + A   +   +    F+KV F +  +L+    V L KG+A
Sbjct: 168 NFTIEKLGYTEKQAMIEDL-EAACQFNLFEAPNKTFYKVDFIDAIELIRRGSVHLKKGFA 226

Query: 410 YVAMSQVVSLVVTQFRCNISKAL 478
           Y     +V+++VT+ + N+  A+
Sbjct: 227 YFPFDDLVTILVTKMKNNMMAAM 249



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>PYRG_BUCAI (P57491) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 545

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 228 NSLIRSLCDSGLS-RRKRYRNSVFSMERNHLRNSSVLQYTRRSTK*DIMSLFKVSAGSWC 52
           NSL R L +  +   R R+R  V ++    +  +  LQ T RS K +++ + ++S   W 
Sbjct: 452 NSLSRKLYNQEIIIERHRHRYEVNNLLFKKIEAAG-LQVTGRSQKNNVVEIIELSNHPWF 510

Query: 51  LICAFHNSLTS 19
           L C FH   TS
Sbjct: 511 LACQFHPEFTS 521



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>POLG_SBMVN (P21231) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 353  EEVPDLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWT 502
            EEVP+ +A    FLS  Y     +Q VS  +   RC + +A V  N + T
Sbjct: 1539 EEVPEFIATEAAFLSFAYGLPVTTQSVSTNILS-RCTVKQARVALNFELT 1587



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>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 353  EEVPDLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWT 502
            EEVP+ +A    FLS  Y     +Q VS  +   RC + +A V  N + T
Sbjct: 1539 EEVPEFIATEAAFLSFAYGLPVTTQSVSTNILS-RCTVKQARVALNFELT 1587



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>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)|
          Length = 1133

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +2

Query: 200  ESQRLLMSEFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVAN 379
            E +R+ MSE     K LP +E E ++ +L Q+   ISQ T +  +          + V+N
Sbjct: 942  ERERISMSEVASHGKPLPSAEREQLRLELQQLNHQISQQTQLRGL----------EAVSN 991

Query: 380  RRVFLSKGYAYVAMSQ 427
            R V   +       SQ
Sbjct: 992  RLVLQREANTLAGQSQ 1007



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>PHZB_PSECL (Q51519) Anthranilate synthase, phenazine specific (EC 4.1.3.27)|
           [Includes: Glutamine amidotransferase]
          Length = 637

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +2

Query: 233 LPYKALPHSEFEAVKDKLSQVARSIS--QSTSVESVFFKVPFEEVPDLVANRRVFLSKGY 406
           +PY+ +    FEAV D+   +A +I+  QS S+E +   +P   VP  + + R  LS   
Sbjct: 68  IPYRQIAERGFEAVDDESPLLAMNITEQQSISIERLLGMLP--NVPIQLNSERFDLSDAS 125

Query: 407 AYVAMSQVVS 436
               +SQV++
Sbjct: 126 YAEIVSQVIA 135



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>KPPR1_RALEU (P19924) Phosphoribulokinase, plasmid (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 291

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 285 NLSFTASNSECGNALYGS*NSLIRSLCDSGLSRRKRYRNS 166
           N++F+   +E  N L+G   SL RS  +SG   R+RY +S
Sbjct: 63  NMNFSHFGAE--NNLFGDLESLFRSYAESGTGMRRRYLHS 100



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>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP)
          Length = 3396

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 212  ASVIQDSRDESGTETVYFPWRETTCAIPPFCSIQDGVQSEILCPCLKSLLDPGASYVPST 33
            A+ I DS D++    V F    T  A PPF  ++   +++ L    +  ++  A Y+P  
Sbjct: 3034 AARILDSNDQATVNPVEF---NTEVATPPFSLLETSNETDFLIGINEESVEGTAIYLPGP 3090

Query: 32   TRLPVSPXL 6
             R  ++P L
Sbjct: 3091 DRCKMNPCL 3099



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>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,|
           mitochondrial precursor
          Length = 343

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 137 RKWFLSMENTLFRYRFRLESPESQRLLMSEFQLPYKALPHSEFEAVKDKL 286
           R++ + M +TL  Y   +E P+  RLL +    PY   P+S    +KD L
Sbjct: 101 RQYIMRMWHTLQYYEKMMEEPQMARLLPNVVPPPYIQPPYSLVLEIKDVL 150



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>KLK9_RAT (P07647) Submandibular glandular kallikrein-9 precursor (EC|
           3.4.21.35) (Tissue kallikrein) (S3 kallikrein)
           (Submandibular enzymatic vasoconstrictor) (SEV) (KLK-S3)
           [Contains: Submandibular glandular kallikrein-9 light
           chain; Submandibular glandu
          Length = 259

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 132 NCASGFSPWKIHCFGTAFVSRVLNHRGFL*VSFSFHTKHCHTRNSRL 272
           NC +   PW++   GT F   VL     +  S+     HC+++N R+
Sbjct: 30  NCETNSQPWQVAVIGTTFCGGVL-----IDPSWVITAAHCYSKNYRV 71



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>POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3341

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 350  FEEVPDLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTA 505
            F+E+P      R  L  G+A VA++ + S+VV      +  A++    KW A
Sbjct: 2288 FDEIPF-----RAVLPSGFAIVAIASLPSVVVGLLAAGVFMAIMYCQNKWNA 2334



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>YR865_MIMIV (Q5UP18) Hypothetical protein R865|
          Length = 590

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
 Frame = +2

Query: 224 EFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRR------ 385
           E + P K L  S F+  K++ + +  +I   +  ++V F +   +V  L+ N+       
Sbjct: 366 ELENPIKTL--SSFQYCKNEATDIFGNIKIIS--DTVDFYLCVSDVEKLIGNKNNYNQDS 421

Query: 386 -VFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKW 499
            +F+ K Y      + V L+   F  N +K  ++  RKW
Sbjct: 422 LIFVKKNYGKELYIKYVGLLEFVFTTNSTKESIVKLRKW 460



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>PRKDC_CANFA (Q8WN22) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4144

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +2

Query: 86   IISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEFQLPYKALPHSEF 265
            ++    L +V CR EE+   +L +++  F    R    E Q++ +    + YK +   + 
Sbjct: 2404 VMKTLCLEVVLCRAEEITNIYLELKSKDFIQVMRHRDDERQKVCL---DIIYKMMAKLKP 2460

Query: 266  EAVKDKLSQVARSISQSTSV 325
              ++D L+ V   IS  + V
Sbjct: 2461 VELRDLLNSVVEFISHPSPV 2480



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>PELI3_MOUSE (Q8BXR6) Protein pellino homolog 3 (Pellino-3)|
          Length = 445

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 126 RRNCASGFSPWKIHCFGTAFVSRVLNHRGFL*VSFSFHTKH 248
           RR  A+G  P  +H   T  VS+ L++RG   +SF+    H
Sbjct: 72  RRPHANGVKPDVMHHISTPLVSKALSNRGQHSISFTLSRSH 112



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>ECM5_YEAST (Q03214) Extracellular matrix protein 5|
          Length = 1411

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
 Frame = +2

Query: 38   KAHMRHQDPAETLNKDIISHFVLRLVYCRTE------ELRKWFLSMENTLFRYRFRLESP 199
            +  ++++DPA+     + S+F   L YC +E      E+RK  L  ++ + + R  L+  
Sbjct: 1029 RCDIKNEDPAKYSLPLLYSYFEFGLKYCDSEDIDKLGEVRKLILKYQDMMQKVRVFLKKD 1088

Query: 200  ESQRLLMS----------EFQLPYKALPHSEFEAV 274
               ++ +S          E++LP ++   SE + V
Sbjct: 1089 PPSKISLSDLEDVLLDIEEYRLPIQSSFFSELDYV 1123



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>TUSC_PASMU (Q9CL88) Protein tusC homolog|
          Length = 119

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 47  MRHQDPAETLNKDIISHFVLRLVY 118
           + HQDPA+ L KD+++ F L  +Y
Sbjct: 49  LNHQDPAQILQKDVVNMFKLLDLY 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,144,206
Number of Sequences: 219361
Number of extensions: 1430575
Number of successful extensions: 4211
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4205
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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