>RL28_DROME (Q9VZS5) 60S ribosomal protein L28|
          Length = 144

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
 Frame = +3

Query: 72  MATVSDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQ 251
           MAT S  L W ++R NN FL+K+    + K  FS EPNNL +V SY+YSG+ +KKT+ V 
Sbjct: 1   MAT-SSHLNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVV 56

Query: 252 PAAEKE-MTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPA 428
           PAA+K+  T VL   K K   +PA  T     +   R+  K +KN +  + YR DLT+ A
Sbjct: 57  PAADKKGFTAVLK--KGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAA 114

Query: 429 LARLSAVYRSLQVAKSGVKK 488
           L R SAV RS + A    KK
Sbjct: 115 LRRASAVLRSQKPAPVKGKK 134

>RL28_SPOFR (Q962T2) 60S ribosomal protein L28|
          Length = 139

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
 Frame = +3

Query: 81  VSDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTV-TVQPA 257
           +S  L W ++R NN FL+K+    N K  FSKEPNN+ N++SY+Y+GL  KK V  V+  
Sbjct: 1   MSSHLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENP 57

Query: 258 AEKEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALAR 437
             K  TVV    K+K  NKPA        +   R+    VK  +  N+YR DL+K  L R
Sbjct: 58  DRKGFTVVYK--KAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRR 115

Query: 438 LSAVYRSLQVAKS 476
            SA+ RS +  K+
Sbjct: 116 ASAILRSQRPIKA 128

>RL28_MOUSE (P41105) 60S ribosomal protein L28|
          Length = 136

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 49/125 (39%), Positives = 72/125 (57%)
 Frame = +3

Query: 84  SDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAE 263
           S  L W +VR  + FLIK+      K  +S EPNNL   +S++Y+GL ++KTV V+PAA+
Sbjct: 1   SAHLQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAAD 55

Query: 264 KEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLS 443
            +  VV+   +S  Q KPA     T + K  R    ++++ +  N YRPDL   A+ R S
Sbjct: 56  GKGVVVVMKRRS-GQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRAS 114

Query: 444 AVYRS 458
           A+ RS
Sbjct: 115 AILRS 119

>RL28_HUMAN (P46779) 60S ribosomal protein L28|
          Length = 136

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 49/125 (39%), Positives = 72/125 (57%)
 Frame = +3

Query: 84  SDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAE 263
           S  L W +VR  + FLIK+      K  +S EPNNL   +S++Y+GL ++KTV V+PAA+
Sbjct: 1   SAHLQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAAD 55

Query: 264 KEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLS 443
            +  VV+   +S  Q KPA     T + K  R    ++++ +  N YRPDL   A+ R S
Sbjct: 56  GKGVVVVIKRRS-GQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRAS 114

Query: 444 AVYRS 458
           A+ RS
Sbjct: 115 AILRS 119

>YFF6_SCHPO (O14069) Probable 60S ribosomal protein C1687.06c|
          Length = 134

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
 Frame = +3

Query: 78  TVSDSLVWELVRKNNCFLIK--QFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQ 251
           +VS+ L+W+++R NN FL+K  +FG     +QF++EP N+   ++ ++SGL N K V VQ
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFGG----IQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 57

Query: 252 PAAEKEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPAL 431
             + + + ++  T     Q     F    +     RK  K++  ++    YR DL K ++
Sbjct: 58  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 117

Query: 432 ARLSAVYRSLQVAKS 476
           AR SA+  S +  K+
Sbjct: 118 ARASAILSSQRPKKT 132

>RL28_RAT (P17702) 60S ribosomal protein L28|
          Length = 136

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 46/125 (36%), Positives = 69/125 (55%)
 Frame = +3

Query: 84  SDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAE 263
           S  L W +VR  + FLIK+      K  +S EPNNL   +S++Y+GL ++KTV V+   +
Sbjct: 1   SAHLQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPD 55

Query: 264 KEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLS 443
            +  VV+   +S  Q KPA     T + K  R    ++++ +  N YRPDL   A+ R S
Sbjct: 56  GKGVVVVMKRRSG-QRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRAS 114

Query: 444 AVYRS 458
           A+ RS
Sbjct: 115 AILRS 119

>RL28_DICDI (Q9GS21) 60S ribosomal protein L28|
          Length = 132

 Score = 70.1 bits (170), Expect = 6e-12
 Identities = 51/141 (36%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
 Frame = +3

Query: 81  VSDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAA 260
           +S  LVW +++KNN FL    G     +  S EP NL N +S KYSGLA + T+ V    
Sbjct: 1   MSQDLVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVN 55

Query: 261 EKEMTVVLSTTKSKKQNKPAAFTHXTVMRK-EFRKMAKAVKNQVSDNYYRPDLTKPALAR 437
            K   VV+S+   KK   PA     T       RK A+ VK   +   Y P+L   AL R
Sbjct: 56  GK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQ--YAPELRAAALGR 110

Query: 438 LSAVYRSLQVAKSGVKKKNRQ 500
           L  V  +L+ AK    +K ++
Sbjct: 111 LHRVQSALRSAKKAAARKAKK 131

>RL28_CAEEL (Q21930) 60S ribosomal protein L28|
          Length = 125

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 49/135 (36%), Positives = 72/135 (53%)
 Frame = +3

Query: 84  SDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAE 263
           SD+LVW+++R N+ FL  Q G      +FS E  NL  V+S KYSGLANK  + V  AA+
Sbjct: 1   SDALVWQVIRNNSAFLRTQRGIGK---RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAAK 57

Query: 264 KEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLS 443
                V+ +TK++K     A T  T+ +     + +  KN   + +      K A  R +
Sbjct: 58  G----VVVSTKNEKGRPAKAVTTSTLSKTPVASVRRLAKNAGFNKF-----NKLAQRRAA 108

Query: 444 AVYRSLQVAKSGVKK 488
           A+ RS QV K+ V+K
Sbjct: 109 AIVRS-QVKKAKVQK 122

>RL28_TRYCR (O00822) 60S ribosomal protein L28|
          Length = 146

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
 Frame = +3

Query: 78  TVSDSLVWELVRKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPA 257
           T S  L W LVR+N+ FL K+ G     ++ S +P N     + +++G  N K   V+  
Sbjct: 2   THSTDLQWLLVRQNSKFLQKRNG-----IRLSSDPFNNNANWTKRHAGFLNTKAAVVKTK 56

Query: 258 AEKEMTVVLSTTKSKKQNKPAAFTHXTVMRK--EFRKMAKAVKNQVSDNYYRPDLTKPAL 431
            ++   ++++T   K  NKP +     VM    E   ++KAV         RPDL   A 
Sbjct: 57  GDR---ILVTTKDGKAGNKPKSMYKKAVMDAGVEASVVSKAVA------AVRPDLASIAS 107

Query: 432 ARLSAVYRSLQVAK 473
            R   +  +L+  K
Sbjct: 108 RRARKMASTLEHMK 121

>H1A_XENLA (P06892) Histone H1A|
          Length = 209

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/89 (26%), Positives = 35/89 (39%)
 Frame = +3

Query: 225 ANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYY 404
           A KK   +   A+K       T KS K  KP   +      K+ +K AKA K+       
Sbjct: 122 AAKKKAPLAAEAKKPAAAAKKTAKSPK--KPKKVSAAAKSPKKLKKPAKAAKSPAKKTAV 179

Query: 405 RPDLTKPALARLSAVYRSLQVAKSGVKKK 491
           +P +   + A+  A    +  AK    KK
Sbjct: 180 KPKVAAKSPAKAKAAKPKVAKAKKAAPKK 208

>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 3462

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
 Frame = +3

Query: 90   SLVWELVRKNNCFL-IKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKT---VTVQPA 257
            S + E   KN CF    + G    K  +  +PN +++ + +        KT    T +P 
Sbjct: 1046 SFILEQPLKNPCFYAFGKIGFLRGKTDYG-QPNKIFSSNLFNLKKGWKTKTEGRFTNRPN 1104

Query: 258  AEKEMTVVLSTTKSKKQNKPAAFTHXTVMRKEFRKMAKAVKNQVSDNYY 404
             +K  + + S  KS   NK            +F K+   V NQ+++N++
Sbjct: 1105 KQKFKSFINSVEKSGPLNKKIFQNEGPFALNDFTKIQPIVGNQLNENFF 1153

>DCPS_RAT (Q8K4F7) Scavenger mRNA decapping enzyme DcpS (EC 3.-.-.-) (DCS-1)|
           (Hint-related 7meGMP-directed hydrolase) (Histidine
           triad protein member 5) (HINT-5)
          Length = 336

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 144 GNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEM 272
           GN   K+QFS +  + YN+   ++  L++ KT  V PA+EK +
Sbjct: 99  GNPELKLQFSNDIYSTYNLFPPRH--LSDIKTTVVYPASEKHL 139

>SPEA_PROMA (Q7VEG4) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)|
          Length = 648

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
 Frame = +3

Query: 174 KEPNNLYNVHSY--KYSGLANKKTVTVQPAAEK----EMTVVLSTTKSKKQNKPAAFTHX 335
           K+  +LY +  +  +Y  + +   VTV P  ++    E+T +L   K +  N P      
Sbjct: 16  KDSCSLYGLDLWGEEYFSINDSGNVTVSPQGKEGNSLELTHLLEELKGRNLNTPLLLRFD 75

Query: 336 TVMRKEFRKMAKAVKNQVSDNYYRPD 413
            ++    +K+ +A +N ++   Y  D
Sbjct: 76  DILEDRLKKLHQAFENAINQYGYNND 101

>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = +2

Query: 326  HPXDCHAQGVPQDGQGCQEPGXXXXXXXXXXXXCSCKTERSLPQPPGCQVWCQE 487
            H  +CH  GV    + CQEPG             +       P+PP    +C +
Sbjct: 1221 HCQNCHCDGVNLTCEACQEPGGLVAPPTDAPVSSTTPYVEDTPEPPLHNFYCSK 1274

>FBX42_MOUSE (Q6PDJ6) F-box only protein 42|
          Length = 717

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 5   GTRTNPGTKQIGGASLQSPVRI 70
           G   +PGT  +GGASL SPV++
Sbjct: 441 GGNLSPGTVAVGGASLDSPVQV 462

>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 230 QEDCDGAACC*EGDDCGPLHNQVKEAEQACGLHPXDCHAQGVPQDGQGCQE 382
           ++DC G  CC EG  C  L     + ++ C  +P D   +G    G  C+E
Sbjct: 86  KKDCGGTGCCKEGQYCTKL-----DGKEQCVYYPDD---KGPQCGGSFCRE 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,213,371
Number of Sequences: 219361
Number of extensions: 1375663
Number of successful extensions: 3992
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3977
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)