| Clone Name | bags22j06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472791.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 474 Score = 504 bits (254), Expect = e-139 Identities = 299/314 (95%) Strand = Plus / Plus Query: 75 atggcgtccaaggtcgagctggtggtggaggtgaagtcgccggccgacaagctgtggacg 134 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1 atggcgtccaaggttgagctggtggtggaggtgaagtcgccggcggacaagctgtggacg 60 Query: 135 gggatgcgcgaatccacggagctgttccccaagatcttccccgagcagtacaagagcatc 194 | | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gcgctgcgcgactcgacggagctgttccccaagatcttccccgagcagtacaagagcatc 120 Query: 195 gagaccgtggagggcgacggcaagtccgccggcaccgtccgcctcatcaagtacaccgag 254 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 121 gagaccgtcgagggcgacggcaagtccgccggcaccgtccgcctcctcaagtacaccgaa 180 Query: 255 ggggttccgatggtgacgttcgccaaggagaaggtggaggtggcggacgacgagaagaag 314 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 181 ggggtgccgatggtgacgttcgcgaaggagaaggtggaggtggcggacgacgagaagaag 240 Query: 315 ttggtgtcctacagcgtggtggacggcgagctggttagcttctacaagaacttcagggtg 374 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 241 gtggtgtcgtacagcgtggtggacggcgagctggtcagcttctacaagaacttcagggtg 300 Query: 375 acggtgcaggtgac 388 ||| |||||||||| Sbjct: 301 acgctgcaggtgac 314 Score = 115 bits (58), Expect = 1e-22 Identities = 70/74 (94%) Strand = Plus / Plus Query: 413 cggcgcggtggtgaactggaccatggacttcgacaaggccagcgacgaggtgcccgagcc 472 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 348 cggcgcggtggtgagctggaccatggacttcgacaaggccagcgaggaggtgcccgaccc 407 Query: 473 agacgtcatcaagg 486 ||||||||||||| Sbjct: 408 ggacgtcatcaagg 421
>dbj|AK059231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E05, full insert sequence Length = 753 Score = 504 bits (254), Expect = e-139 Identities = 299/314 (95%) Strand = Plus / Plus Query: 75 atggcgtccaaggtcgagctggtggtggaggtgaagtcgccggccgacaagctgtggacg 134 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 82 atggcgtccaaggttgagctggtggtggaggtgaagtcgccggcggacaagctgtggacg 141 Query: 135 gggatgcgcgaatccacggagctgttccccaagatcttccccgagcagtacaagagcatc 194 | | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 gcgctgcgcgactcgacggagctgttccccaagatcttccccgagcagtacaagagcatc 201 Query: 195 gagaccgtggagggcgacggcaagtccgccggcaccgtccgcctcatcaagtacaccgag 254 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 202 gagaccgtcgagggcgacggcaagtccgccggcaccgtccgcctcctcaagtacaccgaa 261 Query: 255 ggggttccgatggtgacgttcgccaaggagaaggtggaggtggcggacgacgagaagaag 314 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 262 ggggtgccgatggtgacgttcgcgaaggagaaggtggaggtggcggacgacgagaagaag 321 Query: 315 ttggtgtcctacagcgtggtggacggcgagctggttagcttctacaagaacttcagggtg 374 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 322 gtggtgtcgtacagcgtggtggacggcgagctggtcagcttctacaagaacttcagggtg 381 Query: 375 acggtgcaggtgac 388 ||| |||||||||| Sbjct: 382 acgctgcaggtgac 395 Score = 115 bits (58), Expect = 1e-22 Identities = 70/74 (94%) Strand = Plus / Plus Query: 413 cggcgcggtggtgaactggaccatggacttcgacaaggccagcgacgaggtgcccgagcc 472 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 429 cggcgcggtggtgagctggaccatggacttcgacaaggccagcgaggaggtgcccgaccc 488 Query: 473 agacgtcatcaagg 486 ||||||||||||| Sbjct: 489 ggacgtcatcaagg 502
>dbj|AK119676.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G11, full insert sequence Length = 757 Score = 496 bits (250), Expect = e-137 Identities = 298/314 (94%) Strand = Plus / Plus Query: 75 atggcgtccaaggtcgagctggtggtggaggtgaagtcgccggccgacaagctgtggacg 134 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 86 atggcgtccaaggttgagctggtggtggaggtgaagtcgccggcggacaagctgtggacg 145 Query: 135 gggatgcgcgaatccacggagctgttccccaagatcttccccgagcagtacaagagcatc 194 | | ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 146 gcgctgcgcgactcgacggagctgttccccaagatcttccccgagcggtacaagagcatc 205 Query: 195 gagaccgtggagggcgacggcaagtccgccggcaccgtccgcctcatcaagtacaccgag 254 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 206 gagaccgtcgagggcgacggcaagtccgccggcaccgtccgcctcctcaagtacaccgaa 265 Query: 255 ggggttccgatggtgacgttcgccaaggagaaggtggaggtggcggacgacgagaagaag 314 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 266 ggggtgccgatggtgacgttcgcgaaggagaaggtggaggtggcggacgacgagaagaag 325 Query: 315 ttggtgtcctacagcgtggtggacggcgagctggttagcttctacaagaacttcagggtg 374 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 326 gtggtgtcgtacagcgtggtggacggcgagctggtcagcttctacaagaacttcagggtg 385 Query: 375 acggtgcaggtgac 388 ||| |||||||||| Sbjct: 386 acgctgcaggtgac 399 Score = 115 bits (58), Expect = 1e-22 Identities = 70/74 (94%) Strand = Plus / Plus Query: 413 cggcgcggtggtgaactggaccatggacttcgacaaggccagcgacgaggtgcccgagcc 472 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 433 cggcgcggtggtgagctggaccatggacttcgacaaggccagcgaggaggtgcccgaccc 492 Query: 473 agacgtcatcaagg 486 ||||||||||||| Sbjct: 493 ggacgtcatcaagg 506
>gb|AY754698.1| Zea mays Bet v I allergen mRNA, complete cds Length = 532 Score = 387 bits (195), Expect = e-104 Identities = 270/295 (91%) Strand = Plus / Plus Query: 75 atggcgtccaaggtcgagctggtggtggaggtgaagtcgccggccgacaagctgtggacg 134 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||| || Sbjct: 65 atggcgtccaaggttgagctggtggtggaggtcaagtccccggctgacaagctgtgggcg 124 Query: 135 gggatgcgcgaatccacggagctgttccccaagatcttccccgagcagtacaagagcatc 194 | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 gcgctgcgcgactccacggagctgttccccaagatcttccccgagcagtacaagagcatc 184 Query: 195 gagaccgtggagggcgacggcaagtccgccggcaccgtccgcctcatcaagtacaccgag 254 |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 185 gagaccgtcgagggcgacggcaagtcggccggcaccgtccgcctcctcaagtacaccgag 244 Query: 255 ggggttccgatggtgacgttcgccaaggagaaggtggaggtggcggacgacgagaagaag 314 | ||| |||||| |||||||||||||||||||| | ||| ||||||||||||||| ||| Sbjct: 245 gcggtgccgatgctgacgttcgccaaggagaagcttgagacggcggacgacgagaacaag 304 Query: 315 ttggtgtcctacagcgtggtggacggcgagctggttagcttctacaagaacttca 369 ||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 305 gtggtgtcgtacagcgtggtggacggcgagctggcggacttctacaagaacttca 359 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 428 ctggaccatggacttcgacaaggccagcgacgaggtgcccgagccagacgtcatcaagg 486 |||| ||||||| ||||||||||||| |||| |||||||||| || ||||||| ||||| Sbjct: 418 ctgggccatggagttcgacaaggccaacgaccaggtgcccgacccggacgtcaccaagg 476
>gb|AY112466.1| Zea mays CL10221_1 mRNA sequence Length = 767 Score = 355 bits (179), Expect = 9e-95 Identities = 260/287 (90%) Strand = Plus / Minus Query: 83 caaggtcgagctggtggtggaggtgaagtcgccggccgacaagctgtggacggggatgcg 142 |||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||| | |||| Sbjct: 753 caaggttgagctggtggtggaggtcaagtccccggctgacaagctgtgggcggcgctgcg 694 Query: 143 cgaatccacggagctgttccccaagatcttccccgagcagtacaagagcatcgagaccgt 202 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 693 tgactcgacggagctgttccccaagatcttccccgagcagtacaagagcatcgagaccgt 634 Query: 203 ggagggcgacggcaagtccgccggcaccgtccgcctcatcaagtacaccgagggggttcc 262 ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| || Sbjct: 633 cgagggcgacggcaagtcggccggcaccgtccgcctcctcaagtacaccgaggcggtgcc 574 Query: 263 gatggtgacgttcgccaaggagaaggtggaggtggcggacgacgagaagaagttggtgtc 322 |||| |||||||||||||||||||| | ||| ||||||||||||||| ||| ||||||| Sbjct: 573 gatgctgacgttcgccaaggagaagcttgagacggcggacgacgagaacaaggtggtgtc 514 Query: 323 ctacagcgtggtggacggcgagctggttagcttctacaagaacttca 369 ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 513 gtacagcgtggtggacggcgagctggcggacttctacaagaacttca 467 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 428 ctggaccatggacttcgacaaggccagcgacgaggtgcccgagccagacgtcatcaagg 486 |||| ||||||| ||||||||||||| |||| ||||||| || || ||||||||||||| Sbjct: 408 ctgggccatggagttcgacaaggccaacgaccaggtgcctgacccggacgtcatcaagg 350
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 291 bits (147), Expect = 1e-75 Identities = 171/179 (95%) Strand = Plus / Plus Query: 75 atggcgtccaaggtcgagctggtggtggaggtgaagtcgccggccgacaagctgtggacg 134 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 23253211 atggcgtccaaggttgagctggtggtggaggtgaagtcgccggcggacaagctgtggacg 23253270 Query: 135 gggatgcgcgaatccacggagctgttccccaagatcttccccgagcagtacaagagcatc 194 | | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23253271 gcgctgcgcgactcgacggagctgttccccaagatcttccccgagcagtacaagagcatc 23253330 Query: 195 gagaccgtggagggcgacggcaagtccgccggcaccgtccgcctcatcaagtacaccga 253 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 23253331 gagaccgtcgagggcgacggcaagtccgccggcaccgtccgcctcctcaagtacaccga 23253389 Score = 218 bits (110), Expect = 1e-53 Identities = 128/134 (95%) Strand = Plus / Plus Query: 255 ggggttccgatggtgacgttcgccaaggagaaggtggaggtggcggacgacgagaagaag 314 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 23253534 ggggtgccgatggtgacgttcgcgaaggagaaggtggaggtggcggacgacgagaagaag 23253593 Query: 315 ttggtgtcctacagcgtggtggacggcgagctggttagcttctacaagaacttcagggtg 374 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 23253594 gtggtgtcgtacagcgtggtggacggcgagctggtcagcttctacaagaacttcagggtg 23253653 Query: 375 acggtgcaggtgac 388 ||| |||||||||| Sbjct: 23253654 acgctgcaggtgac 23253667 Score = 115 bits (58), Expect = 1e-22 Identities = 70/74 (94%) Strand = Plus / Plus Query: 413 cggcgcggtggtgaactggaccatggacttcgacaaggccagcgacgaggtgcccgagcc 472 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 23253701 cggcgcggtggtgagctggaccatggacttcgacaaggccagcgaggaggtgcccgaccc 23253760 Query: 473 agacgtcatcaagg 486 ||||||||||||| Sbjct: 23253761 ggacgtcatcaagg 23253774
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence Length = 121337 Score = 291 bits (147), Expect = 1e-75 Identities = 171/179 (95%) Strand = Plus / Plus Query: 75 atggcgtccaaggtcgagctggtggtggaggtgaagtcgccggccgacaagctgtggacg 134 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 91364 atggcgtccaaggttgagctggtggtggaggtgaagtcgccggcggacaagctgtggacg 91423 Query: 135 gggatgcgcgaatccacggagctgttccccaagatcttccccgagcagtacaagagcatc 194 | | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91424 gcgctgcgcgactcgacggagctgttccccaagatcttccccgagcagtacaagagcatc 91483 Query: 195 gagaccgtggagggcgacggcaagtccgccggcaccgtccgcctcatcaagtacaccga 253 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 91484 gagaccgtcgagggcgacggcaagtccgccggcaccgtccgcctcctcaagtacaccga 91542 Score = 218 bits (110), Expect = 1e-53 Identities = 128/134 (95%) Strand = Plus / Plus Query: 255 ggggttccgatggtgacgttcgccaaggagaaggtggaggtggcggacgacgagaagaag 314 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 91687 ggggtgccgatggtgacgttcgcgaaggagaaggtggaggtggcggacgacgagaagaag 91746 Query: 315 ttggtgtcctacagcgtggtggacggcgagctggttagcttctacaagaacttcagggtg 374 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 91747 gtggtgtcgtacagcgtggtggacggcgagctggtcagcttctacaagaacttcagggtg 91806 Query: 375 acggtgcaggtgac 388 ||| |||||||||| Sbjct: 91807 acgctgcaggtgac 91820 Score = 115 bits (58), Expect = 1e-22 Identities = 70/74 (94%) Strand = Plus / Plus Query: 413 cggcgcggtggtgaactggaccatggacttcgacaaggccagcgacgaggtgcccgagcc 472 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || Sbjct: 91854 cggcgcggtggtgagctggaccatggacttcgacaaggccagcgaggaggtgcccgaccc 91913 Query: 473 agacgtcatcaagg 486 ||||||||||||| Sbjct: 91914 ggacgtcatcaagg 91927
>emb|AJ295944.1|FPR295944 Festuca pratensis mRNA for Xet2 protein Length = 1189 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 cgacggcaagtccgccggcaccgtc 233 ||||||||| ||||||||||||||| Sbjct: 297 cgacggcaactccgccggcaccgtc 321
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein Length = 1110 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 cgacggcaagtccgccggcaccgtc 233 ||||||||| ||||||||||||||| Sbjct: 280 cgacggcaactccgccggcaccgtc 304
>emb|AJ518833.1|TMO518833 Tenebrio molitor acp20 gene for adult-specific cuticular protein, exons 1-3 Length = 2784 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 cggcaccgtccgcctcatcaagtacaccg 252 ||||||||||||| || |||||||||||| Sbjct: 1995 cggcaccgtccgcgtcgtcaagtacaccg 2023
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 ggtggcggacgacgagaagaa 313 ||||||||||||||||||||| Sbjct: 2555242 ggtggcggacgacgagaagaa 2555262 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 caaggagaaggtggaggtgg 297 |||||||||||||||||||| Sbjct: 1887775 caaggagaaggtggaggtgg 1887756
>ref|XM_704508.1| PREDICTED: Danio rerio similar to bromo domain-containing protein disrupted in leukemia, transcript variant 3 (LOC567082), mRNA Length = 6759 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gagctggtggtggaggtgaag 110 ||||||||||||||||||||| Sbjct: 4934 gagctggtggtggaggtgaag 4914
>ref|XM_686352.1| PREDICTED: Danio rerio similar to bromo domain-containing protein disrupted in leukemia, transcript variant 1 (LOC567082), mRNA Length = 6738 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gagctggtggtggaggtgaag 110 ||||||||||||||||||||| Sbjct: 4913 gagctggtggtggaggtgaag 4893
>ref|XM_704507.1| PREDICTED: Danio rerio similar to bromo domain-containing protein disrupted in leukemia, transcript variant 2 (LOC567082), mRNA Length = 6690 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gagctggtggtggaggtgaag 110 ||||||||||||||||||||| Sbjct: 4865 gagctggtggtggaggtgaag 4845
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 284 gaaggtggaggtggcggacgacgagaaga 312 ||||||||||| ||||| ||||||||||| Sbjct: 15616782 gaaggtggaggcggcggtcgacgagaaga 15616810 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 aggagaaggtggaggtggcg 299 |||||||||||||||||||| Sbjct: 18995138 aggagaaggtggaggtggcg 18995157
>gb|AF097022.1|AF097022 Leishmania infantum ribosomal L17 protein mRNA, complete cds Length = 583 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 cgtcggcgcggtggtgaactg 430 ||||||||||||||||||||| Sbjct: 60 cgtcggcgcggtggtgaactg 80
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E11 Length = 150200 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 284 gaaggtggaggtggcggacgacgagaaga 312 ||||||||||| ||||| ||||||||||| Sbjct: 50937 gaaggtggaggcggcggtcgacgagaaga 50965
>emb|AL935333.9| Zebrafish DNA sequence from clone CH211-198I18 in linkage group 5, complete sequence Length = 199019 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gagctggtggtggaggtgaag 110 ||||||||||||||||||||| Sbjct: 154424 gagctggtggtggaggtgaag 154404
>emb|X63459.1|TMACP20 T.molitor ACP20 gene for adult cuticular protein Length = 786 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 cggcaccgtccgcctcatcaagtacaccg 252 ||||||||||||| || |||||||||||| Sbjct: 354 cggcaccgtccgcgtcgtcaagtacaccg 382
>ref|XM_522336.1| PREDICTED: Pan troglodytes similar to intermediate filament-like protein MGC:2625 isoform 2; intermediate filament-like MGC:2625 (LOC466936), mRNA Length = 1662 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 268 aggtggaggtggaggacgacgaga 245
>ref|NM_183971.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 316 ggagaaggtggaggtggcgg 335
>gb|AF172282.1| Oryza sativa adh1-adh2 region Length = 339485 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 16634 ggagaaggtggaggtggcgg 16615
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 cggcgtcggcgcggtggtga 426 |||||||||||||||||||| Sbjct: 1126421 cggcgtcggcgcggtggtga 1126440
>gb|AC165415.5| Mus musculus chromosome 15, clone RP23-17G19, complete sequence Length = 227254 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ggaccatggacttcgacaaggcca 453 ||||||||||||| |||||||||| Sbjct: 157631 ggaccatggacttagacaaggcca 157608
>gb|AC125194.4| Mus musculus BAC clone RP23-275K6 from chromosome 18, complete sequence Length = 155706 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aagagctttgaactcattgc 52 |||||||||||||||||||| Sbjct: 22708 aagagctttgaactcattgc 22727
>gb|AC125095.3| Mus musculus BAC clone RP24-179H12 from chromosome 14, complete sequence Length = 147123 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 ctttgaactcattgcgactttgcatccc 65 |||||||||| |||| |||||||||||| Sbjct: 60500 ctttgaactctttgctactttgcatccc 60473
>gb|BC010431.1| Homo sapiens hypothetical protein LOC25900, isoform 3, mRNA (cDNA clone IMAGE:3508474), complete cds Length = 2815 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 578 aggtggaggtggaggacgacgaga 555
>ref|XM_504440.1| Yarrowia lipolytica CLIB122, YALI0E26829g predicted mRNA Length = 1110 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ggtggcggacgacgagaaga 312 |||||||||||||||||||| Sbjct: 399 ggtggcggacgacgagaaga 380
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 gctggtggtggaggtgaagt 111 |||||||||||||||||||| Sbjct: 924332 gctggtggtggaggtgaagt 924351 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 cggcgtcggcgcggtggtga 426 |||||||||||||||||||| Sbjct: 771564 cggcgtcggcgcggtggtga 771583
>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037P04, complete sequence Length = 139693 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 131890 ggagaaggtggaggtggcgg 131909
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 gccgacggcgtcggcgcggtggtg 425 |||||||||| ||||||||||||| Sbjct: 336488 gccgacggcggcggcgcggtggtg 336511
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 gccgacggcgtcggcgcggtggtg 425 |||||||||| ||||||||||||| Sbjct: 300863 gccgacggcggcggcgcggtggtg 300840
>gb|AY575969.1| Rhodococcus sp. T104 putative serine-threonine protein kinase, indole oxygenase, putative TetR-family transcriptional regulator, and flavin reductase-like protein genes, complete cds Length = 8842 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cggcgtcggcgcggtggtga 426 |||||||||||||||||||| Sbjct: 2076 cggcgtcggcgcggtggtga 2057
>gb|AY129442.1| Drosophila melanogaster LD16566 full insert cDNA Length = 3932 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 ctggcaagagctttgaactcattg 51 ||||||||| |||||||||||||| Sbjct: 3274 ctggcaagaactttgaactcattg 3297
>gb|AY129439.1| Drosophila melanogaster LD08185 full insert cDNA Length = 3074 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 ctggcaagagctttgaactcattg 51 ||||||||| |||||||||||||| Sbjct: 2244 ctggcaagaactttgaactcattg 2267
>gb|AC023677.4| Drosophila melanogaster 3L BAC RP98-20I1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 143136 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 ctggcaagagctttgaactcattg 51 ||||||||| |||||||||||||| Sbjct: 89075 ctggcaagaactttgaactcattg 89052
>emb|CR616146.1| full-length cDNA clone CS0DI036YN10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2892 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 477 aggtggaggtggaggacgacgaga 454
>gb|BC023664.2| Homo sapiens hypothetical protein LOC25900, isoform 3, mRNA (cDNA clone IMAGE:4896463) Length = 2815 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 578 aggtggaggtggaggacgacgaga 555
>gb|BC001790.1| Homo sapiens hypothetical protein LOC25900, isoform 3, mRNA (cDNA clone IMAGE:3501825) Length = 2815 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 578 aggtggaggtggaggacgacgaga 555
>ref|NM_080730.2| Homo sapiens hypothetical protein LOC25900, isoform 3 (HOM-TES-103), transcript variant 2, mRNA Length = 2671 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 578 aggtggaggtggaggacgacgaga 555
>ref|NM_001039670.1| Homo sapiens hypothetical protein LOC25900, isoform 3 (HOM-TES-103), transcript variant 4, mRNA Length = 2683 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 578 aggtggaggtggaggacgacgaga 555
>ref|NM_168513.1| Drosophila melanogaster CG10971-RB, transcript variant B (CG10971), mRNA Length = 4282 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 ctggcaagagctttgaactcattg 51 ||||||||| |||||||||||||| Sbjct: 3472 ctggcaagaactttgaactcattg 3495
>ref|NM_140340.1| Drosophila melanogaster CG10971-RA, transcript variant A (CG10971), mRNA Length = 4089 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 ctggcaagagctttgaactcattg 51 ||||||||| |||||||||||||| Sbjct: 3279 ctggcaagaactttgaactcattg 3302
>gb|AC096708.3| Homo sapiens chromosome 18, clone RP11-861L17, complete sequence Length = 179824 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccaaggagaaggtggaggtg 296 |||||||||||||||||||| Sbjct: 176869 ccaaggagaaggtggaggtg 176850
>gb|AC108775.12| Mus musculus chromosome 1, clone RP23-331M15, complete sequence Length = 188126 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aagagctttgaactcattgc 52 |||||||||||||||||||| Sbjct: 86417 aagagctttgaactcattgc 86436
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 5659330 ggagaaggtggaggtggcgg 5659349
>gb|AC022035.5|AC022035 Homo sapiens chromosome 18, clone RP11-106E15, complete sequence Length = 175424 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccaaggagaaggtggaggtg 296 |||||||||||||||||||| Sbjct: 5565 ccaaggagaaggtggaggtg 5546
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 aggagaaggtggaggtggcggacgacga 307 ||||| |||||| ||||||||||||||| Sbjct: 24207027 aggaggaggtggtggtggcggacgacga 24207054
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 13627179 ggagaaggtggaggtggcgg 13627198
>ref|XM_624771.1| PREDICTED: Apis mellifera similar to CG32019-PA, isoform A (LOC409821), mRNA Length = 15896 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ggtgacggtgcaggtgacgg 390 |||||||||||||||||||| Sbjct: 2865 ggtgacggtgcaggtgacgg 2884
>dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1045F02 Length = 215378 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 181139 ggagaaggtggaggtggcgg 181158
>gb|AC006064.10| Homo sapiens 12 PAC RP5-940J5 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 172571 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 112567 aggtggaggtggaggacgacgaga 112590
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 aggagaaggtggaggtggcg 299 |||||||||||||||||||| Sbjct: 80058 aggagaaggtggaggtggcg 80077
>dbj|AP003336.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151H08 Length = 123001 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 32417 ggagaaggtggaggtggcgg 32436
>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2055_H10 Length = 119290 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 aggagaaggtggaggtggcggacgacga 307 ||||| |||||| ||||||||||||||| Sbjct: 7415 aggaggaggtggtggtggcggacgacga 7442
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 aggagaaggtggaggtggcggacgacga 307 ||||| |||||| ||||||||||||||| Sbjct: 165768 aggaggaggtggtggtggcggacgacga 165795
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 aggagaaggtggaggtggcg 299 |||||||||||||||||||| Sbjct: 19925 aggagaaggtggaggtggcg 19944
>gb|AC155159.2| Mus musculus BAC clone RP24-482D1 from 18, complete sequence Length = 190752 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aagagctttgaactcattgc 52 |||||||||||||||||||| Sbjct: 73606 aagagctttgaactcattgc 73587
>gb|AY648560.1| Klebsiella pneumoniae strain M5a1 Orf1 gene, partial cds; LysR-like regulatory protein (mhbR), putative 3-hydroxybenzoate transporter (mhbT), gentisate 1,2-dioxygenase (mhbD), fumarylpyruvate hydrolase (mhbH), maleylpyruvate isomerase (mhbI), 3-hydroxybenzoate-6-hydroxylase (mhbM), and Orf2 genes, complete cds; and Orf3 gene, partial cds Length = 8216 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ggcgtcggcgcggtggtgaa 427 |||||||||||||||||||| Sbjct: 4346 ggcgtcggcgcggtggtgaa 4365
>gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45 of 83 of the complete sequence Length = 297381 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 ctggcaagagctttgaactcattg 51 ||||||||| |||||||||||||| Sbjct: 192687 ctggcaagaactttgaactcattg 192664
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 cgccgacggcgtcggcgcggtggtgaac 428 |||||||||| |||||||||||||||| Sbjct: 2736591 cgccgacggccacggcgcggtggtgaac 2736564
>gb|U60571.1|RNCAII1 Rattus norvegicus carbonic anhydrase II gene, 5' flanking region Length = 1014 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 aggagaaggtggaggtggcggacg 303 |||||| ||||||||||||||||| Sbjct: 860 aggagacggtggaggtggcggacg 837
>gb|AC137126.13| Mus musculus chromosome 15, clone RP24-250I9, complete sequence Length = 193459 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ggaccatggacttcgacaaggcca 453 ||||||||||||| |||||||||| Sbjct: 3361 ggaccatggacttagacaaggcca 3338
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggagaaggtggaggtggcgg 300 |||||||||||||||||||| Sbjct: 5725807 ggagaaggtggaggtggcgg 5725826
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ggtggcggacgacgagaaga 312 |||||||||||||||||||| Sbjct: 3180864 ggtggcggacgacgagaaga 3180883
>dbj|AB045676.1| Lysobacter sp. IB-9374 lepA gene for lysyl endopeptidase precursor, complete cds Length = 2480 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gctggtggtggaggtgaagt 111 |||||||||||||||||||| Sbjct: 1847 gctggtggtggaggtgaagt 1828
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 ggtggtggaggtgaagtcgccggccgac 122 ||||| |||||||||||||| ||||||| Sbjct: 1764593 ggtggcggaggtgaagtcgctggccgac 1764566
>gb|J05128.1|ACHAPI Achromobacter lyticus protease I (API) gene, complete cds Length = 2414 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gctggtggtggaggtgaagt 111 |||||||||||||||||||| Sbjct: 1844 gctggtggtggaggtgaagt 1825
>gb|AF124432.1| Homo sapiens HOM-TES-103 tumor antigen mRNA, complete sequence Length = 2370 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aggtggaggtggcggacgacgaga 309 |||||||||||| ||||||||||| Sbjct: 261 aggtggaggtggaggacgacgaga 238
>dbj|D23664.1|MXB29487 Lysobacter enzymogenes gene Length = 2217 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gctggtggtggaggtgaagt 111 |||||||||||||||||||| Sbjct: 1647 gctggtggtggaggtgaagt 1628 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,052,279 Number of Sequences: 3902068 Number of extensions: 3052279 Number of successful extensions: 81123 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80065 Number of HSP's gapped (non-prelim): 1056 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)