>NU2M_OENBE (P93401) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 488

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 42/44 (95%), Positives = 42/44 (95%)
 Frame = +2

Query: 485 MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNGG 616
           MFNLFLAV PEIFIINATFILLIHGVVFSTSKKDDYPPLVSN G
Sbjct: 1   MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNVG 44

>NU2M_ARATH (O05000) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 499

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 42/52 (80%), Positives = 43/52 (82%)
 Frame = +2

Query: 461 EVIETRNHMFNLFLAVSPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNGG 616
           E +    HMFNLFLAV PEIFIINATFILLIHGVVFSTSKK DYPPL SN G
Sbjct: 4   EFVRILPHMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLASNVG 55

>NU2M_MARPO (P26846) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 489

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +2

Query: 497 FLAVSPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNGG 616
           FLA+ PEIF+INAT ILLI+GVVFSTSKK DYPPLV N G
Sbjct: 6   FLALFPEIFLINATIILLIYGVVFSTSKKYDYPPLVRNVG 45

>NU2M_CHOCR (P48903) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 497

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = +2

Query: 479 NHMFNLFLAVSPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNGGL 619
           N +++++  + PEIFI++   ILL++GV+FS+S K  YP L  N GL
Sbjct: 3   NFLYDIY-PILPEIFILSNVCILLVYGVLFSSSIKLGYPLLAQNLGL 48

>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3017

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -2

Query: 312 SFIVFLASLTKLVRRKTSIFTSHNLDLNYHLVNRASRTKTITRRDGKTLRGPAPWSLPCL 133
           SF +FL +L   +    S  T  N    YHL N  S +  +   D   L    P  LPC+
Sbjct: 172 SFSIFLLALLSCLTTPASALTYGNSSGLYHLTNDCSNSSIVLEADAMILH--LPGCLPCV 229

>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3009

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
 Frame = -2

Query: 312 SFIVFLASLTKLVRRKTSIFTSHNLDLNYHLVNRASRTKTITRRDGKTLRGPAPWSLPCL 133
           SF +FL +L   +    S +  HN+   YH+ N  S    +   +   L    P  +PC+
Sbjct: 172 SFSIFLLALLSCLTTPASAYEVHNVSGIYHVTNDCSNASIV--YEAADLIMHTPGCVPCV 229

Query: 132 -------------PPLVGASVPIPKT 94
                        P L   +V IP T
Sbjct: 230 REGNSSRCWVALTPTLAARNVTIPTT 255

>RTKN_HUMAN (Q9BST9) Rhotekin|
          Length = 563

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = -2

Query: 210 ASRTKTITRRDGKTLRGPAPW-----SLPCLP-PLVGASV-PIPKTIYSF-YGRFRLGSR 55
           A+ T  +T+R+G  L  P PW       P LP P   ASV P P   +   +GR R  S 
Sbjct: 462 AAVTDILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSL 521

Query: 54  *GIGPNKTEIPARIATLP 1
             + P+ +     +A LP
Sbjct: 522 DAVPPDHSPRARSVAPLP 539

>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = -2

Query: 261  SIFTSHNLDLNYHLVNRASRTKTITRRDGKTLRGPAPWSLPCLPPLVGASVPIPKTIYSF 82
            S+   H LDLN  + ++A  T T  +R G         SLP    +VG+ + IP+   + 
Sbjct: 2544 SLANGHTLDLNCLVASQAPHTITWYKRGG---------SLPSRHQIVGSRLRIPQVTPAD 2594

Query: 81   YGRFRLGSR*GIGPNKTEI 25
             G +      G G  +T +
Sbjct: 2595 SGEYVCHVSNGAGSRETSL 2613

>POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3018

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = -2

Query: 312 SFIVFLASLTKLVRRKTSIFTSHNLDLNYHLVNRASRTKTITRRDGKTLRGPAPWSLPCL 133
           SF +FL +L   +    S  T  N    YHL N    +  +   D   L    P  LPC+
Sbjct: 172 SFSIFLLALLSCLTTPASALTYGNSSGLYHLTNDCPNSSIVLEADAMILH--LPGCLPCV 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,617,441
Number of Sequences: 219361
Number of extensions: 1461662
Number of successful extensions: 3590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3590
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)