ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22i09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y14433.1|MTTANAD2 Triticum aestivum mitochondrial nad2 gene, exon 1 and 2 and join-across CDS Length = 4293 Score = 618 bits (312), Expect = e-174 Identities = 343/358 (95%) Strand = Plus / Plus Query: 254 aagatcgaggtttttcttcttactaactttgtcaaagaggctnnnnnnncaataaatgac 313 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 742 aagatcgaggtttttcttcttactaactttgtcaaagaggctaaaaaaacaataaatgac 801 Query: 314 caacgaaacttcgagtgagtaggataaggaggagtagtcggaggatctgagaagggaatt 373 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 802 caacgaaacttcgagtgagtaggataaggaggagtagtcggaggatcttagaagggaatt 861 Query: 374 agagaaaaaagagcagcagctcagtaataacacctaggcttttgaattaactctgcgatt 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 862 agagaaaaaagagcagcagctcagtaataacacctaggcttttgaattaactctgcgatt 921 Query: 434 tggaagacggaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaat 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 922 tggaagacggaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaat 981 Query: 494 cnnnnnnnagcggtttccccagagatctttatcattaacgcaaccttcattttgctcatt 553 | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 982 ctttttttagcggtttccccagagatctttatcattaacgcaaccttcattttgctcatt 1041 Query: 554 catggagttgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1042 catggagttgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 1099
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 618 bits (312), Expect = e-174 Identities = 343/358 (95%) Strand = Plus / Minus Query: 254 aagatcgaggtttttcttcttactaactttgtcaaagaggctnnnnnnncaataaatgac 313 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 182744 aagatcgaggtttttcttcttactaactttgtcaaagaggctaaaaaaacaataaatgac 182685 Query: 314 caacgaaacttcgagtgagtaggataaggaggagtagtcggaggatctgagaagggaatt 373 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 182684 caacgaaacttcgagtgagtaggataaggaggagtagtcggaggatcttagaagggaatt 182625 Query: 374 agagaaaaaagagcagcagctcagtaataacacctaggcttttgaattaactctgcgatt 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182624 agagaaaaaagagcagcagctcagtaataacacctaggcttttgaattaactctgcgatt 182565 Query: 434 tggaagacggaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaat 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182564 tggaagacggaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaat 182505 Query: 494 cnnnnnnnagcggtttccccagagatctttatcattaacgcaaccttcattttgctcatt 553 | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182504 ctttttttagcggtttccccagagatctttatcattaacgcaaccttcattttgctcatt 182445 Query: 554 catggagttgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182444 catggagttgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 182387 Score = 504 bits (254), Expect = e-139 Identities = 257/258 (99%) Strand = Plus / Plus Query: 2 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6517 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 6576 Query: 62 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6577 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 6636 Query: 122 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6637 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 6696 Query: 182 cttcttgttattgtctttgtccgagatgcccggttcaccaaatgataattcaaatcgaga 241 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 6697 cttcttgttattgtctttgtccgagatgcccggttcaccaaatgagaattcaaatcgaga 6756 Query: 242 ttgtgtgaagtaaagatc 259 |||||||||||||||||| Sbjct: 6757 ttgtgtgaagtaaagatc 6774
>emb|Y14435.1|MTTANADH2 Triticum aestivum mitochondrial NADH dehydrogenase subunit 2 Length = 1776 Score = 611 bits (308), Expect = e-171 Identities = 342/358 (95%) Strand = Plus / Plus Query: 254 aagatcgaggtttttcttcttactaactttgtcaaagaggctnnnnnnncaataaatgac 313 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 40 aagatcgaggtttttcttcttactaactttgtcaaagaggctaaaaaaacaataaatgac 99 Query: 314 caacgaaacttcgagtgagtaggataaggaggagtagtcggaggatctgagaagggaatt 373 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 100 caacgaaacttcgagtgagtaggataaggaggagtagtcggaggatcttagaagggaatt 159 Query: 374 agagaaaaaagagcagcagctcagtaataacacctaggcttttgaattaactctgcgatt 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 160 agagaaaaaagagcagcagctcagtaataacacctaggcttttgaattaactctgcgatt 219 Query: 434 tggaagacggaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaat 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 220 tggaagacggaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaat 279 Query: 494 cnnnnnnnagcggtttccccagagatctttatcattaacgcaaccttcattttgctcatt 553 | |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 280 ctttttttagcggttttcccagagatctttatcattaacgcaaccttcattttgctcatt 339 Query: 554 catggagttgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 catggagttgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 397
>emb|X99020.1|MYSCATP Secale cereale mitochondrial atpA & atp9 genes Length = 3091 Score = 511 bits (258), Expect = e-142 Identities = 258/258 (100%) Strand = Plus / Plus Query: 2 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 402 Query: 62 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 462 Query: 122 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 522 Query: 182 cttcttgttattgtctttgtccgagatgcccggttcaccaaatgataattcaaatcgaga 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 cttcttgttattgtctttgtccgagatgcccggttcaccaaatgataattcaaatcgaga 582 Query: 242 ttgtgtgaagtaaagatc 259 |||||||||||||||||| Sbjct: 583 ttgtgtgaagtaaagatc 600
>emb|X80469.1|MTTDATPA9 T.durum mitochondria genes atpA and atp9 Length = 3622 Score = 504 bits (254), Expect = e-139 Identities = 257/258 (99%) Strand = Plus / Plus Query: 2 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 145 Query: 62 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 205 Query: 122 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 265 Query: 182 cttcttgttattgtctttgtccgagatgcccggttcaccaaatgataattcaaatcgaga 241 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 266 cttcttgttattgtctttgtccgagatgcccggttcaccaaatgagaattcaaatcgaga 325 Query: 242 ttgtgtgaagtaaagatc 259 |||||||||||||||||| Sbjct: 326 ttgtgtgaagtaaagatc 343
>emb|X80470.1|MTDATPA9 T.durum mitochondria atpA and atp9 mRNA Length = 2610 Score = 496 bits (250), Expect = e-137 Identities = 256/258 (99%) Strand = Plus / Plus Query: 2 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 84 Query: 62 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 cctagtcgaaagcgcccataaaaagagtaaatcgttttcggtatgggtacgctggcccct 144 Query: 122 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 acgaggggcggtaagcaaggtagagaccagggagcaggaccgcgaagggtcttcccatct 204 Query: 182 cttcttgttattgtctttgtccgagatgcccggttcaccaaatgataattcaaatcgaga 241 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 205 cttcttgttattgtctttgtccgagatgcctggttcaccaaatgagaattcaaatcgaga 264 Query: 242 ttgtgtgaagtaaagatc 259 |||||||||||||||||| Sbjct: 265 ttgtgtgaagtaaagatc 282
>emb|X16049.1|MITATPAA Wheat mitochondrial atpA gene for F-1-ATPase alpha subunit Length = 2031 Score = 430 bits (217), Expect = e-117 Identities = 246/252 (97%), Gaps = 4/252 (1%) Strand = Plus / Plus Query: 12 caattctcgcgggaatctcggtcttgtttgggcc--gattccttaacgagagcctagtcg 69 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 15 caattctcgcgggaatctcggtcttgtttgggccccgattccttaacgagagcctagtcg 74 Query: 70 aaagcg-cccataaaaagagtaaatcgttttcggtatgggtacgctggcccctacgaggg 128 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 aaagcgacccataaaaagagtaaatcgttttcggtatgggtacgctggcccctacgaggg 134 Query: 129 gcggtaagcaaggtagagaccagggagcaggaccgcgaagggtc-ttcccatctcttctt 187 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 135 gcggtaagcaaggtagagaccagggagcaggaccgcgaagggtctttcccatctcttctt 194 Query: 188 gttattgtctttgtccgagatgcccggttcaccaaatgataattcaaatcgagattgtgt 247 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 195 gttattgtctttgtccgagatgcccgcttcaccaaatgagaattcaaatcgagattgtgt 254 Query: 248 gaagtaaagatc 259 |||||||||||| Sbjct: 255 gaagtaaagatc 266
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 270 bits (136), Expect = 5e-69 Identities = 156/165 (94%) Strand = Plus / Minus Query: 447 aaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnnagcgg 506 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 406537 aaatgaaagctgaagaagttatcgaaactcggaaccacatgttcaatctttttttagcgg 406478 Query: 507 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406477 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 406418 Query: 567 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406417 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 406373 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 339383 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 339442 Query: 472 aact 475 |||| Sbjct: 339443 aact 339446 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 338390 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 338443 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 295553 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 295606 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 62559 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 62506
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 270 bits (136), Expect = 5e-69 Identities = 156/165 (94%) Strand = Plus / Minus Query: 447 aaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnnagcgg 506 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 405713 aaatgaaagctgaagaagttatcgaaactcggaaccacatgttcaatctttttttagcgg 405654 Query: 507 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405653 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 405594 Query: 567 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405593 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 405549 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 338573 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 338632 Query: 472 aact 475 |||| Sbjct: 338633 aact 338636 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 337580 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 337633 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 294743 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 294796 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 62064 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 62011
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 270 bits (136), Expect = 5e-69 Identities = 156/165 (94%) Strand = Plus / Minus Query: 447 aaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnnagcgg 506 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 405709 aaatgaaagctgaagaagttatcgaaactcggaaccacatgttcaatctttttttagcgg 405650 Query: 507 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405649 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 405590 Query: 567 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405589 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 405545 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 338570 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 338629 Query: 472 aact 475 |||| Sbjct: 338630 aact 338633 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 337577 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 337630 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 294740 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 294793 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 62064 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 62011
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 270 bits (136), Expect = 5e-69 Identities = 156/165 (94%) Strand = Plus / Minus Query: 447 aaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnnagcgg 506 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 405579 aaatgaaagctgaagaagttatcgaaactcggaaccacatgttcaatctttttttagcgg 405520 Query: 507 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405519 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 405460 Query: 567 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405459 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 405415 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 338428 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 338487 Query: 472 aact 475 |||| Sbjct: 338488 aact 338491 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 337435 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 337488 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 294592 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 294645 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 62014 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 61961
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 262 bits (132), Expect = 1e-66 Identities = 155/165 (93%) Strand = Plus / Plus Query: 447 aaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnnagcgg 506 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4639515 aaatgaaagctgaagaagttatcgaaactcggaaccacatgttcaatctttttttagcgg 4639574 Query: 507 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4639575 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 4639634 Query: 567 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 4639635 ttagtacctctaagaaagatgattatccaccattagttagtaatg 4639679 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct: 4645016 cttttgaattaactctgcgattttgaagatggaggaaatgaaagctgaagaagttatcga 4645075 Query: 472 aact 475 |||| Sbjct: 4645076 aact 4645079 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 4644022 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 4644075
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 262 bits (132), Expect = 1e-66 Identities = 155/165 (93%) Strand = Plus / Plus Query: 447 aaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnnagcgg 506 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 92384 aaatgaaagctgaagaagttatcgaaactcggaaccacatgttcaatctttttttagcgg 92443 Query: 507 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92444 tttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagttgtat 92503 Query: 567 ttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 92504 ttagtacctctaagaaagatgattatccaccattagttagtaatg 92548 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct: 97885 cttttgaattaactctgcgattttgaagatggaggaaatgaaagctgaagaagttatcga 97944 Query: 472 aact 475 |||| Sbjct: 97945 aact 97948 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 96891 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 96944
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 220 bits (111), Expect = 4e-54 Identities = 152/169 (89%), Gaps = 8/169 (4%) Strand = Plus / Minus Query: 443 gaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnna 502 ||||||||||||| |||||||||||||||||| |||||||||||| | Sbjct: 511418 gaggaaatgaaagcagaagaagttatcgaaac--------acatgttcaatcttttttta 511367 Query: 503 gcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagtt 562 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 511366 gcggtttccccagagatctttctcattaacgcaaccttcattttgctcattcatggagtt 511307 Query: 563 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511306 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 511258
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 220 bits (111), Expect = 4e-54 Identities = 152/169 (89%), Gaps = 8/169 (4%) Strand = Plus / Minus Query: 443 gaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnna 502 ||||||||||||| |||||||||||||||||| |||||||||||| | Sbjct: 70358 gaggaaatgaaagcagaagaagttatcgaaac--------acatgttcaatcttttttta 70307 Query: 503 gcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagtt 562 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 70306 gcggtttccccagagatctttctcattaacgcaaccttcattttgctcattcatggagtt 70247 Query: 563 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70246 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 70198
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 220 bits (111), Expect = 4e-54 Identities = 152/169 (89%), Gaps = 8/169 (4%) Strand = Plus / Plus Query: 443 gaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnna 502 ||||||||||||| |||||||||||||||||| |||||||||||| | Sbjct: 510546 gaggaaatgaaagcagaagaagttatcgaaac--------acatgttcaatcttttttta 510597 Query: 503 gcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagtt 562 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 510598 gcggtttccccagagatctttctcattaacgcaaccttcattttgctcattcatggagtt 510657 Query: 563 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 510658 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 510706 Score = 220 bits (111), Expect = 4e-54 Identities = 152/169 (89%), Gaps = 8/169 (4%) Strand = Plus / Minus Query: 443 gaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnna 502 ||||||||||||| |||||||||||||||||| |||||||||||| | Sbjct: 83345 gaggaaatgaaagcagaagaagttatcgaaac--------acatgttcaatcttttttta 83294 Query: 503 gcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagtt 562 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 83293 gcggtttccccagagatctttctcattaacgcaaccttcattttgctcattcatggagtt 83234 Query: 563 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83233 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 83185
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 220 bits (111), Expect = 4e-54 Identities = 152/169 (89%), Gaps = 8/169 (4%) Strand = Plus / Plus Query: 443 gaggaaatgaaagtagaagaagttatcgaaactcggaaccacatgttcaatcnnnnnnna 502 ||||||||||||| |||||||||||||||||| |||||||||||| | Sbjct: 90658 gaggaaatgaaagcagaagaagttatcgaaac--------acatgttcaatcttttttta 90709 Query: 503 gcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagtt 562 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 90710 gcggtttccccagagatctttctcattaacgcaaccttcattttgctcattcatggagtt 90769 Query: 563 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90770 gtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 90818
>emb|Z50200.1|MTLPATP9S L.perenne mitochondrial atp9 gene Length = 1776 Score = 200 bits (101), Expect = 4e-48 Identities = 107/109 (98%) Strand = Plus / Plus Query: 14 attctcgcgggaatctcggtcttgtttgggccgattccttaacgagagcctagtcgaaag 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 292 attctcgcgggaatctcggtcttgtttgggccgattccttaacgagagcctagtcgaaag 351 Query: 74 cgcccataaaaagagtaaatcgttttcggtatgggtacgctggccccta 122 |||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 352 cgcccataaaaagagtcaatcgttttcggtatgggtacgcaggccccta 400
>emb|Z50199.1|MTLPATP9F L.perenne mitochondrial atp9 gene Length = 1776 Score = 200 bits (101), Expect = 4e-48 Identities = 107/109 (98%) Strand = Plus / Plus Query: 14 attctcgcgggaatctcggtcttgtttgggccgattccttaacgagagcctagtcgaaag 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 292 attctcgcgggaatctcggtcttgtttgggccgattccttaacgagagcctagtcgaaag 351 Query: 74 cgcccataaaaagagtaaatcgttttcggtatgggtacgctggccccta 122 |||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 352 cgcccataaaaagagtcaatcgttttcggtatgggtacgcaggccccta 400
>dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete genome Length = 430597 Score = 194 bits (98), Expect = 2e-46 Identities = 121/131 (92%) Strand = Plus / Minus Query: 481 ccacatgttcaatcnnnnnnnagcggtttccccagagatctttatcattaacgcaacctt 540 |||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 427375 ccacatgttcaatctttttttagcggtttccccagagatctttatcattaatgcaacctt 427316 Query: 541 cattttgctcattcatggagttgtatttagtacctctaagaaagatgattatccaccgtt 600 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 427315 cattttgctcattcatggagttgtatttagtacctctaagaaatatgattatccaccgtt 427256 Query: 601 agttagtaatg 611 ||| ||||||| Sbjct: 427255 agtcagtaatg 427245 Score = 194 bits (98), Expect = 2e-46 Identities = 121/131 (92%) Strand = Plus / Minus Query: 481 ccacatgttcaatcnnnnnnnagcggtttccccagagatctttatcattaacgcaacctt 540 |||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 278125 ccacatgttcaatctttttttagcggtttccccagagatctttatcattaatgcaacctt 278066 Query: 541 cattttgctcattcatggagttgtatttagtacctctaagaaagatgattatccaccgtt 600 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 278065 cattttgctcattcatggagttgtatttagtacctctaagaaatatgattatccaccgtt 278006 Query: 601 agttagtaatg 611 ||| ||||||| Sbjct: 278005 agtcagtaatg 277995 Score = 194 bits (98), Expect = 2e-46 Identities = 121/131 (92%) Strand = Plus / Minus Query: 481 ccacatgttcaatcnnnnnnnagcggtttccccagagatctttatcattaacgcaacctt 540 |||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 76625 ccacatgttcaatctttttttagcggtttccccagagatctttatcattaatgcaacctt 76566 Query: 541 cattttgctcattcatggagttgtatttagtacctctaagaaagatgattatccaccgtt 600 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 76565 cattttgctcattcatggagttgtatttagtacctctaagaaatatgattatccaccgtt 76506 Query: 601 agttagtaatg 611 ||| ||||||| Sbjct: 76505 agtcagtaatg 76495
>gb|AF034120.1|PGNAD2S01 Panax ginseng NADH-dehydrogenase subunit 2 (NAD2) gene, mitochondrial gene encoding mitochondrial protein, exon a Length = 376 Score = 178 bits (90), Expect = 1e-41 Identities = 119/131 (90%) Strand = Plus / Plus Query: 481 ccacatgttcaatcnnnnnnnagcggtttccccagagatctttatcattaacgcaacctt 540 |||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 19 ccacatgttcaatctttttttagcggtttccccagagatctttatcattaatgcaacctt 78 Query: 541 cattttgctcattcatggagttgtatttagtacctctaagaaagatgattatccaccgtt 600 ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| Sbjct: 79 cattttgctcattcatggacttgtatttagtacgtctaagaaatatgattatccaccgtt 138 Query: 601 agttagtaatg 611 ||| ||||||| Sbjct: 139 agtcagtaatg 149
>gb|M81725.1|OBENAD201 Oenothera berteriana NADH dehydrogenase subunit 2 (nad2) gene, exons 1-2 Length = 3162 Score = 178 bits (90), Expect = 1e-41 Identities = 119/131 (90%) Strand = Plus / Plus Query: 481 ccacatgttcaatcnnnnnnnagcggtttccccagagatctttatcattaacgcaacctt 540 |||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 516 ccacatgttcaatctttttttagcggtttccccagagatctttatcattaatgcaacctc 575 Query: 541 cattttgctcattcatggagttgtatttagtacctctaagaaagatgattatccaccgtt 600 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 576 cattttgctcattcatggagttgtttttagtacctctaagaaagacgattatccaccgtt 635 Query: 601 agttagtaatg 611 ||| ||||||| Sbjct: 636 agtcagtaatg 646
>gb|BT011704.1| Arabidopsis thaliana At2g07733 gene, complete cds Length = 258 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 51 agcggtttccccagagatctttatcattaatgcaacctccattttgctcattcatggagt 110 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 |||||||||||||||||||||| |||||||||| ||||||| ||||||| Sbjct: 111 tgtatttagtacctctaagaaatatgattatccgccgttagccagtaatg 160
>gb|AC006225.3| Arabidopsis thaliana chromosome 2 BAC T5E7 genomic sequence, complete sequence Length = 88249 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 51454 agcggtttccccagagatctttatcattaatgcaacctccattttgctcattcatggagt 51513 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 |||||||||||||||||||||| |||||||||| ||||||| ||||||| Sbjct: 51514 tgtatttagtacctctaagaaatatgattatccgccgttagccagtaatg 51563
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Minus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 81247 agcggtttccccagagatctttatcattaatgcaacctccattttgctcattcatggagt 81188 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 |||||||||||||||||||||| |||||||||| ||||||| ||||||| Sbjct: 81187 tgtatttagtacctctaagaaatatgattatccgccgttagccagtaatg 81138
>emb|X96535.1|ATRPSNAD A.thaliana mitochondrial rps4 gene & nad2 gene, exon 1 & 2 and joining features Length = 4784 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 2755 agcggtttccccagagatctttatcattaatgcaacctccattttgctcattcatggagt 2814 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 |||||||||||||||||||||| |||||||||| ||||||| ||||||| Sbjct: 2815 tgtatttagtacctctaagaaatatgattatccgccgttagccagtaatg 2864
>dbj|BA000009.3| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete sequence Length = 368801 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct: 240490 agcggtttccccagagatctttctcattaatgcaaccttcattttgctcattcatggagt 240549 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 | | |||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 240550 tatttttagtacctctaagaaatatgattatccaccgttagtcagtaatg 240599
>dbj|AP006444.1| Brassica napus mitochondrial DNA, complete genome Length = 221853 Score = 170 bits (86), Expect = 3e-39 Identities = 118/131 (90%) Strand = Plus / Minus Query: 481 ccacatgttcaatcnnnnnnnagcggtttccccagagatctttatcattaacgcaacctt 540 |||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 219206 ccacatgttcaatctttttttagcggtttccccagagatctttatcattaatgcaacctc 219147 Query: 541 cattttgctcattcatggagttgtatttagtacctctaagaaagatgattatccaccgtt 600 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 219146 cattttgctcattcatggagttgtatttagtacctctaagaaatatgattatccgccgtt 219087 Query: 601 agttagtaatg 611 || ||||||| Sbjct: 219086 agccagtaatg 219076
>dbj|BA000024.1| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete sequence Length = 501020 Score = 170 bits (86), Expect = 3e-39 Identities = 104/110 (94%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct: 144224 agcggtttccccagagatctttctcattaatgcaaccttcattttgctcattcatggagt 144283 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagttagtaatg 611 | | |||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 144284 tatttttagtacctctaagaaatatgattatccaccgttagtcagtaatg 144333
>gb|AY672909.1| Dimocarpus longan NADH dehydrogenase subunit 2-like gene, complete sequence; mitochondrial Length = 780 Score = 159 bits (80), Expect = 1e-35 Identities = 115/129 (89%) Strand = Plus / Plus Query: 480 accacatgttcaatcnnnnnnnagcggtttccccagagatctttatcattaacgcaacct 539 ||||||||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct: 26 accacatgttcaatctttttttagcggtttccccagagatctttatcattaatgcaatct 85 Query: 540 tcattttgctcattcatggagttgtatttagtacctctaagaaagatgattatccaccgt 599 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| Sbjct: 86 ccattttgctcattcatggagttgtatttagtacctctaagaaatatgattctccgccgt 145 Query: 600 tagttagta 608 |||| |||| Sbjct: 146 tagtcagta 154
>emb|X54387.1|MITTAATPA T.aestivum mitochondrial atpA gene promoter Length = 263 Score = 141 bits (71), Expect = 3e-30 Identities = 71/71 (100%) Strand = Plus / Plus Query: 2 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 ggcagcgtagcaattctcgcgggaatctcggtcttgtttgggccgattccttaacgagag 252 Query: 62 cctagtcgaaa 72 ||||||||||| Sbjct: 253 cctagtcgaaa 263
>gb|M68929.1|MPOMTCG Marchantia polymorpha mitochondrion, complete genome Length = 186609 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||| ||| ||| ||||||||| |||||||||||||| |||||||||| ||| ||||||| Sbjct: 8902 agcgcttttcccggagatctttctcattaacgcaaccatcattttgcttatttatggagt 8961 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagt 603 |||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 8962 tgtatttagtacctctaaaaaatatgattatccaccgttagt 9003
>dbj|AB251495.1| Physcomitrella patens mitochondrial DNA, complete genome Length = 105340 Score = 123 bits (62), Expect = 7e-25 Identities = 92/102 (90%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcattttgctcattcatggagt 561 |||| ||| ||||||||||||| | |||||||||||| |||||||||| ||| ||||||| Sbjct: 51575 agcgcttttcccagagatctttcttattaacgcaaccatcattttgcttatttatggagt 51634 Query: 562 tgtatttagtacctctaagaaagatgattatccaccgttagt 603 |||||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 51635 tgtatttagtacctctaaaaaatatgattatccaccattagt 51676
>gb|M57903.1|RICMTCOXI Oryza sativa (japonica cultivar-group) tRNA-Ser (trnS), gene, complete sequence; cytochrome oxidase subunit I (coxI) gene, partial cds; and unknown genes; mitochondrial Length = 2280 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 1966 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 2025 Query: 472 aact 475 |||| Sbjct: 2026 aact 2029 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 973 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 1026
>emb|X15990.1|MIOSCOXI Rice mitochondrial coxI gene for cytochrome oxidase subunit I Length = 1955 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 115 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 174 Query: 472 aact 475 |||| Sbjct: 175 aact 178
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 20502559 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 20502618 Query: 472 aact 475 |||| Sbjct: 20502619 aact 20502622 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 581 aaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||| Sbjct: 13440888 aaagatgattatccaccgttagttagtaatg 13440918 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 20501567 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 20501620 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| ||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 20572903 ataaaagaccaacgaaatgacgagtgagaaggataagggggagtagtaggagga 20572956
>dbj|AK064537.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H11, full insert sequence Length = 1621 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 754 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 813 Query: 472 aact 475 |||| Sbjct: 814 aact 817
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 20428773 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 20428832 Query: 472 aact 475 |||| Sbjct: 20428833 aact 20428836 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 581 aaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||| Sbjct: 13395162 aaagatgattatccaccgttagttagtaatg 13395192 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 20427781 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 20427834 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| ||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 20499117 ataaaagaccaacgaaatgacgagtgagaaggataagggggagtagtaggagga 20499170
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 90674 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 90615 Query: 472 aact 475 |||| Sbjct: 90614 aact 90611 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 91666 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 91613 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| ||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 20330 ataaaagaccaacgaaatgacgagtgagaaggataagggggagtagtaggagga 20277
>emb|BX000456.3|CNS08CDD Oryza sativa chromosome 12, . BAC OSJNBa0050D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 185820 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 412 cttttgaattaactctgcgatttggaagacggaggaaatgaaagtagaagaagttatcga 471 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 9142 cttttgaattaactctgcgattttgaagacggaggaaatgaaagctgaagaagttatcga 9083 Query: 472 aact 475 |||| Sbjct: 9082 aact 9079 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 10134 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 10081
>gb|U93501.1|HVU93501 Hordeum vulgare hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaagagc 387 ||||||||||||| |||||||||||||| |||||||||| Sbjct: 829 agtcggaggatcttagaagggaattagaaaaaaaagagc 867
>gb|U93499.1|ASU93499 Aegilops speltoides var. speltoides hypothetical protein 256 gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1065 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaagagc 387 ||||||||||||| |||||||||||||| |||||||||| Sbjct: 819 agtcggaggatcttagaagggaattagaaaaaaaagagc 857
>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154442 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 581 aaagatgattatccaccgttagttagtaatg 611 ||||||||||||||||||||||||||||||| Sbjct: 144351 aaagatgattatccaccgttagttagtaatg 144321
>dbj|D13109.1|RICMT13 Oryza sativa (japonica cultivar-group) mitochondrial gene for rpoB protein, partial cds Length = 1639 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 824 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 771
>dbj|D78336.1| Oryza sativa (japonica cultivar-group) mitochondrial DNA for ribosomal protein L2, ribosomal protein S19, complete cds Length = 4565 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataaggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||||| |||||||| |||||| Sbjct: 1019 ataaaagaccaacgaaacgacgagtgagaaggataagggggagtagtaggagga 1072
>emb|X56186.1|MITACOX1 Triticum timopheevii x Triticum aestivum mitochondrial coxI gene for cytochrome-c oxidase subunit I and ORF256 Length = 3059 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 953 agtcggaggatcttagaagggaattagaaaaaaaa 987
>gb|L10365.1|WHTMTUNPRB Triticum aestivum x Triticum timopheevi unknown mRNA; mitochondrial gene for mitochondrial product Length = 895 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 811 agtcggaggatcttagaagggaattagaaaaaaaa 845
>gb|L10364.1|WHTMTUNPRA Triticum aestivum x Triticum timopheevi unknown mRNA; mitochondrial gene for mitochondrial product Length = 895 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 811 agtcggaggatcttagaagggaattagaaaaaaaa 845
>gb|L10332.1|WHTMTUNNN Triticum timopheevii mitochondrion open reading frame (ORF256), complete cds Length = 936 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 852 agtcggaggatcttagaagggaattagaaaaaaaa 886
>gb|U93504.1|TMU93504 Triticum monococcum hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1042 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 829 agtcggaggatcttagaagggaattagaaaaaaaa 863
>gb|U93502.1|SCU93502 Secale cereale hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1042 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 830 agtcggaggatcttagaagggaattagaaaaaaaa 864
>gb|U93498.1|ASU93498 Aegilops speltoides var. speltoides hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1066 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 819 agtcggaggatcttagaagggaattagaaaaaaaa 853
>gb|U93495.1|ABU93495 Aegilops bicornis hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1066 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 819 agtcggaggatcttagaagggaattagaaaaaaaa 853
>gb|U46764.1|ACU46764 Aegilops columnaris cytochrome c oxidase subunit I (cox1) gene, mitochondrial gene encoding mitochondrial protein, complete cds Length = 2048 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| |||||||||||||| |||||| Sbjct: 70 agtcggaggatcttagaagggaattagaaaaaaaa 104
>gb|U93497.1|ASU93497 Aegilops sharonensis hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1066 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaa 381 ||||||||||||| |||||||||||||| |||| Sbjct: 819 agtcggaggatcttagaagggaattagaaaaaa 851
>gb|AY548063.1| Myriocolea irrorata NADH dehydrogenase subunit 4 (nad4) gene, partial cds; nad4-nad2 intergenic spacer, complete sequence; and NADH dehydrogenase subunit 2 (nad2) gene, partial cds; mitochondrial Length = 183 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcatt 544 |||| ||| ||| ||||||||| |||||||||||||| ||||| Sbjct: 141 agcgcttttcccggagatctttctcattaacgcaaccatcatt 183
>gb|AY548061.1| Cyclolejeunea peruviana NADH dehydrogenase subunit 4 (nad4) gene, partial cds; nad4-nad2 intergenic spacer, complete sequence; and NADH dehydrogenase subunit 2 (nad2) gene, partial cds; mitochondrial Length = 183 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcatt 544 |||| ||| ||| ||||||||| |||||||||||||| ||||| Sbjct: 141 agcgcttttcccggagatctttctcattaacgcaaccatcatt 183
>gb|AY548060.1| Ceratolejeunea filaria NADH dehydrogenase subunit 4 (nad4) gene, partial cds; nad4-nad2 intergenic spacer, complete sequence; and NADH dehydrogenase subunit 2 (nad2) gene, partial cds; mitochondrial Length = 183 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Plus Query: 502 agcggtttccccagagatctttatcattaacgcaaccttcatt 544 |||| ||| ||| ||||||||| |||||||||||||| ||||| Sbjct: 141 agcgcttttcccggagatctttctcattaacgcaaccatcatt 183
>gb|U93503.1|TBU93503 Triticum boeoticum subsp. boeoticum hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1041 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| ||||||||| |||| |||||| Sbjct: 829 agtcggaggatcttagaagggaactagaaaaaaaa 863
>gb|U93500.1|PTU93500 Aegilops tauschii hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1072 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| ||||||||||| || |||||| Sbjct: 829 agtcggaggatcttagaagggaattcgaaaaaaaa 863
>gb|U93496.1|ASU93496 Aegilops searsii hypothetical protein 256 (ELF) gene, complete cds, and cytochrome C oxidase I (coxI) gene, partial cds, mitochondrial genes encoding mitochondrial proteins Length = 1066 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 349 agtcggaggatctgagaagggaattagagaaaaaa 383 ||||||||||||| ||||||||||| || |||||| Sbjct: 819 agtcggaggatcttagaagggaattcgaaaaaaaa 853
>emb|AJ409118.1|PLA409118 Phaeoceros laevis mitochondrial partial nad2 gene for NADH dehydrogenase subunit 2, exons 1-3 Length = 5054 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 585 atgattatccaccgttagttagtaatg 611 |||||||||||||||||||| |||||| Sbjct: 6 atgattatccaccgttagtttgtaatg 32
>dbj|D13111.1|RICMT15 Oryza sativa (japonica cultivar-group) mitochondrial rpoB pseudogene Length = 835 Score = 46.1 bits (23), Expect = 0.14 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 305 ataaatgaccaacgaaacttcgagtgagtaggataa-ggaggagtagtcggagga 358 ||||| |||||||||||| |||||||| ||||||| || |||||||| |||||| Sbjct: 443 ataaaagaccaacgaaacgacgagtgagaaggataaggggggagtagtaggagga 389
>gb|AC090061.15| Homo sapiens 12 BAC RP11-637A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 23401 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 361 tgagaagggaattagagaaaaaagagcagc 390 |||||||||||| |||||||||| |||||| Sbjct: 8412 tgagaagggaatgagagaaaaaacagcagc 8383
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 221 aaatgataattcaaatcgagat 242 |||||||||||||||||||||| Sbjct: 2118625 aaatgataattcaaatcgagat 2118604
>gb|AC130885.3| Homo sapiens 3 BAC RP11-491D12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163237 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 ataaaaagagtaaatcgttttc 100 |||||||||||||||||||||| Sbjct: 20063 ataaaaagagtaaatcgttttc 20084
>gb|AC008651.7|AC008651 Homo sapiens chromosome 5 clone CTB-187A7, complete sequence Length = 147098 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 361 tgagaagggaattagagaaaaaagagcagc 390 |||||||||||| |||||||||| |||||| Sbjct: 116213 tgagaagggaatgagagaaaaaacagcagc 116184
>gb|AC146029.4| Pan troglodytes BAC clone RP43-124D5 from 7, complete sequence Length = 190776 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gaattagagaaaaaagagcag 389 ||||||||||||||||||||| Sbjct: 97329 gaattagagaaaaaagagcag 97349
>gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chromosome 7, complete sequence Length = 210978 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 gaattagagaaaaaagagcag 389 ||||||||||||||||||||| Sbjct: 173976 gaattagagaaaaaagagcag 173956
>gb|AC147087.3| Pan troglodytes BAC clone RP43-59E13 from 7, complete sequence Length = 130280 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gaattagagaaaaaagagcag 389 ||||||||||||||||||||| Sbjct: 110045 gaattagagaaaaaagagcag 110065
>emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on chromosome 13 Contains a 60S ribosomal protein L12 (RPL12) pseudogene and a pseudogene similar to part of ribosomal protein S3A (RPS3A)(FTE1), complete sequence Length = 176939 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 tttttcttcttactaactttg 284 ||||||||||||||||||||| Sbjct: 145836 tttttcttcttactaactttg 145816
>gb|AC099742.2| Papio anubis clone RP41-167P22, complete sequence Length = 171612 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 gaattagagaaaaaagagcag 389 ||||||||||||||||||||| Sbjct: 157595 gaattagagaaaaaagagcag 157575
>emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070O11, complete sequence Length = 134231 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 568 tagtacctctaagaaagatgattatccac 596 |||| |||||||||| ||||||||||||| Sbjct: 127850 tagtgcctctaagaaggatgattatccac 127878
>gb|AC183776.2| Pan troglodytes BAC clone CH251-246H3 from chromosome 7, complete sequence Length = 160056 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gaattagagaaaaaagagcag 389 ||||||||||||||||||||| Sbjct: 121078 gaattagagaaaaaagagcag 121098
>gb|AC097626.9| Homo sapiens X BAC RP11-527B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115435 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 agaagggaattagagaaaaaa 383 ||||||||||||||||||||| Sbjct: 15163 agaagggaattagagaaaaaa 15143
>gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H23, complete sequence Length = 159611 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 438 agacggaggaaatgaaagtagaaga 462 |||||||| |||||||||||||||| Sbjct: 119548 agacggagcaaatgaaagtagaaga 119572
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 568 tagtacctctaagaaagatgattatccac 596 |||| |||||||||| ||||||||||||| Sbjct: 32984988 tagtgcctctaagaaggatgattatccac 32985016
>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete sequence Length = 123337 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 568 tagtacctctaagaaagatgattatccac 596 |||| |||||||||| ||||||||||||| Sbjct: 100843 tagtgcctctaagaaggatgattatccac 100871 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 568 tagtacctctaagaaagatgattatccac 596 |||| |||||||||| ||||||||||||| Sbjct: 100655 tagtgcctctaagaaggatgattatccac 100683
>emb|AL732337.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0821G03, complete sequence Length = 75285 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 568 tagtacctctaagaaagatgattatccac 596 |||| |||||||||| ||||||||||||| Sbjct: 22319 tagtgcctctaagaaggatgattatccac 22347 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 568 tagtacctctaagaaagatgattatccac 596 |||| |||||||||| ||||||||||||| Sbjct: 22131 tagtgcctctaagaaggatgattatccac 22159
>gb|AC002064.1|HSAC002064 Human BAC clone RG016J04 from 7q21, complete sequence Length = 156214 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 gaattagagaaaaaagagcag 389 ||||||||||||||||||||| Sbjct: 98587 gaattagagaaaaaagagcag 98567
>emb|CT025553.4| Mouse DNA sequence from clone RP23-470O20 on chromosome 14, complete sequence Length = 173093 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 gaggaaatgaaagtagaaga 462 |||||||||||||||||||| Sbjct: 48539 gaggaaatgaaagtagaaga 48558
>emb|CR407588.11| Zebrafish DNA sequence from clone DKEY-190L8 in linkage group 17, complete sequence Length = 154439 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 taaaaagagtaaatcgtttt 99 |||||||||||||||||||| Sbjct: 23417 taaaaagagtaaatcgtttt 23398
>gb|U28929.1| Caenorhabditis elegans cosmid F09C12, complete sequence Length = 25662 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 ggaattagagaaaaaagagcagca 391 ||||||||||||||||||| |||| Sbjct: 19988 ggaattagagaaaaaagaggagca 19965
>emb|AL713873.11| Human DNA sequence from clone RP11-10L1 on chromosome 1 Contains the 5' end of a novel gene, complete sequence Length = 101283 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 cccatctcttcttgttattgtctt 198 |||||||| ||||||||||||||| Sbjct: 18320 cccatctcatcttgttattgtctt 18297
>emb|AL162413.26| Human DNA sequence from clone RP11-109M17 on chromosome 9 Containe the 5' end of a pseudogene similar to part of A kinase (PRKA) anchor protein 8 (AKAP8), complete sequence Length = 114302 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 ctaggcttttgaattaactc 426 |||||||||||||||||||| Sbjct: 77197 ctaggcttttgaattaactc 77216
>emb|AL161912.15| Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a novel pseudogene and a novel gene, complete sequence Length = 102624 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gaattagagaaaaaagagca 388 |||||||||||||||||||| Sbjct: 7136 gaattagagaaaaaagagca 7117
>gb|AC155270.3| Mus musculus BAC clone RP23-195H19 from chromosome 12, complete sequence Length = 215502 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 accaaatgataattcaaatc 237 |||||||||||||||||||| Sbjct: 37604 accaaatgataattcaaatc 37585
>gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, complete sequence Length = 229964 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 taagcaaggtagagaccagg 152 |||||||||||||||||||| Sbjct: 166317 taagcaaggtagagaccagg 166298
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gagaaaaaagagcagcagct 394 |||||||||||||||||||| Sbjct: 24437792 gagaaaaaagagcagcagct 24437811
>gb|AC008992.7|AC008992 Homo sapiens chromosome 19 clone LLNLF-95F7, complete sequence Length = 45855 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ggaggatctgagaagggaat 372 |||||||||||||||||||| Sbjct: 3156 ggaggatctgagaagggaat 3137
>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166966 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gagaagggaattagagaaaa 381 |||||||||||||||||||| Sbjct: 156906 gagaagggaattagagaaaa 156925
>gb|AE000789.1| Borrelia burgdorferi B31 plasmid lp28-4, complete sequence Length = 27323 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 aaatgaaagtagaagaagtt 466 |||||||||||||||||||| Sbjct: 12117 aaatgaaagtagaagaagtt 12136
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1142B04 Length = 161964 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gagaaaaaagagcagcagct 394 |||||||||||||||||||| Sbjct: 53508 gagaaaaaagagcagcagct 53527
>gb|AC004823.1|AC004823 Homo sapiens PAC clone RP1-172A13 from Xq23, complete sequence Length = 115973 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 agtacctctaagaaagatga 588 |||||||||||||||||||| Sbjct: 49036 agtacctctaagaaagatga 49055
>gb|AC007796.1|AC007796 Homo sapiens chromosome 19, cosmid F5119, complete sequence Length = 36347 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ggaggatctgagaagggaat 372 |||||||||||||||||||| Sbjct: 33523 ggaggatctgagaagggaat 33504
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 aagtagaagaagttatcgaaactc 476 |||||||||||||||| ||||||| Sbjct: 1447811 aagtagaagaagttatggaaactc 1447788
>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence Length = 196552 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 accaaatgataattcaaatc 237 |||||||||||||||||||| Sbjct: 79626 accaaatgataattcaaatc 79645
>emb|AL845485.16| Mouse DNA sequence from clone RP23-237D23 on chromosome 2, complete sequence Length = 230213 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 caaccttcattttgctcatt 553 |||||||||||||||||||| Sbjct: 217922 caaccttcattttgctcatt 217941
>emb|AJ409126.1|GBI409126 Ginkgo biloba mitochondrial partial nad2 gene for NADH dehydrogenase subunit 2, exons 1-2 Length = 1614 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 580 gaaagatgattatccaccgttagttagtaatg 611 |||| ||||||||||||| ||||| ||||||| Sbjct: 1 gaaatatgattatccaccattagtaagtaatg 32 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,066,436 Number of Sequences: 3902068 Number of extensions: 5066436 Number of successful extensions: 114042 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113343 Number of HSP's gapped (non-prelim): 683 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
