Clone Information

BLAST Search Result

Clone Name	bags22h14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kina...	32	0.88
2	PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor ...	32	1.5
3	M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kina...	32	1.5
4	LBD28_ARATH (Q9SCS4) Putative LOB domain protein 28	31	2.0
5	NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified i...	30	3.3
6	SCG1_BOVIN (P23389) Secretogranin-1 precursor (Secretogranin I) ...	30	3.3
7	NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i...	30	4.4
8	TYPH_SHISS (Q3YU11) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	30	5.7
9	TYPH_SHIFL (Q83P01) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	30	5.7
10	TYPH_SHIDS (Q327L4) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	30	5.7
11	TYPH_SHIBS (Q31SV7) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	30	5.7
12	TYPH_ECOLI (P07650) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	30	5.7
13	TYPH_ECOL6 (Q8FA52) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	30	5.7
14	TYPH_ECO57 (Q8XB35) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	30	5.7
15	AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen r...	30	5.7
16	PRIO_FELCA (O18754) Major prion protein precursor (PrP) (CD230 a...	30	5.7
17	CDGT_THETU (P26827) Cyclomaltodextrin glucanotransferase precurs...	29	7.5
18	TYPH_ERWCT (Q6D991) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	29	7.5
19	FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncog...	29	7.5
20	TYPH_YERPS (Q66EV9) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	29	7.5
21	TYPH_YERPE (Q74PY8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	29	7.5
22	ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like...	29	7.5
23	PRIO_SHEEP (P23907) Major prion protein precursor (PrP) (CD230 a...	29	7.5
24	PRIO_RUPRU (Q5XVM4) Major prion protein precursor (PrP) (CD230 a...	29	7.5
25	PRIO_OVIMU (Q7JK02) Major prion protein precursor (PrP) (CD230 a...	29	7.5
26	PRIO_OVIMO (Q7JIY2) Major prion protein precursor (PrP) (CD230 a...	29	7.5
27	PRIO_OVICA (Q7JIH3) Major prion protein precursor (PrP) (CD230 a...	29	7.5
28	PRIO_CAPHI (P52113) Major prion protein precursor (PrP) (CD230 a...	29	7.5
29	PRIO_BUDTA (Q95M08) Major prion protein precursor (PrP) (CD230 a...	29	7.5
30	PRIO2_BOVIN (Q01880) Major prion protein 2 precursor (PrP) (Majo...	29	7.5
31	SUWA_DROME (P12297) Protein suppressor of white apricot	29	7.5
32	DEAF1_PANTR (O77562) Deformed epidermal autoregulatory factor 1 ...	29	7.5
33	TYPH_SALTY (Q7CP66) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	29	9.7
34	TYPH_SALTI (Q8XF46) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	29	9.7
35	TYPH_SALPA (Q5PK22) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	29	9.7
36	TYPH_SALCH (Q57G40) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)	29	9.7
37	HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog ...	29	9.7
38	DEAF1_MOUSE (Q9Z1T5) Deformed epidermal autoregulatory factor 1 ...	29	9.7
39	DEAF1_RAT (O88450) Deformed epidermal autoregulatory factor 1 ho...	29	9.7
40	DEAF1_HUMAN (O75398) Deformed epidermal autoregulatory factor 1 ...	29	9.7

>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1233

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 15  EPRMMPWN-----VPDPGGGSTGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSNQPS 179
           EPR++ W      VP PG GS+ G   + SQ  +H   + SG  + F  R   +S   PS
Sbjct: 651 EPRLL-WERVEKLVPRPGSGSSSGSSNSGSQPGSH-PGSQSGSGERFRVRSSSKSEGSPS 708

Query: 180 DRGWPETVEADD 215
            R      + DD
Sbjct: 709 PRQESAAKKPDD 720

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>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)|
            (Receptor-linked protein-tyrosine phosphatase 99A)
            (DPTP99A)
          Length = 1301

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 379  PRLPATDSSSSGRQMTSPPTSTAYQ*RHPPSAPPLASLVRKANSMPLLHRSWRSI 543
            P  PAT S+S+G   T+P T T      PP+ P + SL  + NS+ L + ++ ++
Sbjct: 1169 PVTPATASASAGATPTTPMTPTV-----PPTIPTIPSLASQ-NSLTLTNANFHTV 1217

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>M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1239

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 15  EPRMMPWN-----VPDPGGGSTGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSNQPS 179
           EPR++ W      VP PG GS+ G   + SQ  +H   + SG  + F  R   +S   PS
Sbjct: 660 EPRLL-WERVEKLVPRPGSGSSSGSSNSGSQPGSH-PGSQSGSGERFRVRSSSKSEGSPS 717

Query: 180 DR 185
            R
Sbjct: 718 QR 719

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>LBD28_ARATH (Q9SCS4) Putative LOB domain protein 28|
          Length = 198

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 18  PRMMPWNVPDPGGGSTGGYLFNVSQQAAHMQAALSGQSQ 134
           P M+P + P+ GG  TG  L+N +Q+ A  Q+A   ++Q
Sbjct: 136 PMMIPEHTPNNGGCLTGQQLYNEAQRFASTQSAQMQETQ 174

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>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2067

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 39/115 (33%)
 Frame = +3

Query: 144 QRGPLQSSNQPSDRGWPETVEADDNNPM--------------QQQHHQG--GLNPSVSAI 275
           Q GP    N P  +G+ + V +   NPM              QQ  +QG   L+P +  +
Sbjct: 456 QMGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPNQGPQSLHPGLGGM 515

Query: 276 ------GFGPGVSFSGF---RVPA------------RMQGNE--EHSGGNGDKPP 371
                 GF  G +   F   +VP+            ++Q N+  +H+GG G  PP
Sbjct: 516 PKRLPPGFSAGQANPNFMQGQVPSTTAATPGNSGALQLQANQNVQHAGGQGAGPP 570

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>SCG1_BOVIN (P23389) Secretogranin-1 precursor (Secretogranin I) (SgI)|
           (Chromogranin B) (CgB) [Contains: GAWK peptide; Peptide
           BAM-1745; Secretolytin]
          Length = 646

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 326 HPRGDAEPGEA--DAGPEPDGRHGR 258
           HP G   PGE+  DA PE D RH R
Sbjct: 239 HPEGQEAPGESEEDASPEVDKRHSR 263

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>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2063

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 39/115 (33%)
 Frame = +3

Query: 144 QRGPLQSSNQPSDRGWPETVEADDNNPM--------------QQQHHQG--GLNPSVSAI 275
           Q GP    N P  +G+ + V +   NPM              QQ  +QG   L+P +  +
Sbjct: 452 QMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPNQGPQSLHPGLGGM 511

Query: 276 ------GFGPGVSFSGF---RVPA------------RMQGNE--EHSGGNGDKPP 371
                 GF  G +   F   +VP+            ++Q N+  +H+GG G  PP
Sbjct: 512 PKRLPPGFSAGQANPNFMQGQVPSTTATTPGNSGAPQLQANQNVQHAGGQGAGPP 566

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>TYPH_SHISS (Q3YU11) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSV 377
           N P+  +H  GG+   V+++  GP V+  G  +P        H+GG  DK  S+
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESI 130

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>TYPH_SHIFL (Q83P01) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSV 377
           N P+  +H  GG+   V+++  GP V+  G  +P        H+GG  DK  S+
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESI 130

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>TYPH_SHIDS (Q327L4) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSV 377
           N P+  +H  GG+   V+++  GP V+  G  +P        H+GG  DK  S+
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESI 130

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>TYPH_SHIBS (Q31SV7) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSV 377
           N P+  +H  GG+   V+++  GP V+  G  +P        H+GG  DK  S+
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESI 130

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>TYPH_ECOLI (P07650) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSV 377
           N P+  +H  GG+   V+++  GP V+  G  +P        H+GG  DK  S+
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESI 130

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>TYPH_ECOL6 (Q8FA52) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSV 377
           N P+  +H  GG+   V+++  GP V+  G  +P        H+GG  DK  S+
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESI 130

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>TYPH_ECO57 (Q8XB35) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSV 377
           N P+  +H  GG+   V+++  GP V+  G  +P        H+GG  DK  S+
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESI 130

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>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)|
          Length = 860

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
 Frame = +3

Query: 108 QAALSGQSQFFFQRGPLQSSNQPSDRGWPETVEADDNN------PMQQQHHQGGLNPSVS 269
           Q    G+   FF   P  S+   + R  P  ++   +N      P    +   G + S S
Sbjct: 386 QPIYEGEQSIFFSDAP--SAESHTQRRIPNYIQQRQSNLSASLQPRYMYNMSNGESHSGS 443

Query: 270 AIGFGPGVSFSGFRVPARMQGNEEHSGGNGDKPPSVSSAS 389
           A+   P    SGF VP     N     G+G+   +  S+S
Sbjct: 444 AVTGPPTTHVSGFSVPPPQHINPSQVLGHGEFSTTAPSSS 483

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>PRIO_FELCA (O18754) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHMAG 117

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>CDGT_THETU (P26827) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 710

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 213 DNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGD 362
           DN+ M + ++ G   P   A+ F    + +   VPA   G E++  GNGD
Sbjct: 353 DNHDMDRFYNGGSTRPVEQALAF----TLTSRGVPAIYYGTEQYMTGNGD 398

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>TYPH_ERWCT (Q6D991) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 442

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDK 365
           N P+  +H  GG+   V+++  GP V+  G  VP        H+GG  DK
Sbjct: 78  NGPLVDKHSTGGVG-DVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDK 126

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>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 28/131 (21%)
 Frame = +3

Query: 51  GGGSTGGYLFNVSQQAAHMQAA-------------------LSGQSQFFFQRGPLQSSNQ 173
           G GSTGGY  + S Q+++ Q +                    S QS  + Q      S Q
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQ 133

Query: 174 PSDRGWPETV-EADDNNPMQQQHHQGGLNPSVSAIGFGPG--------VSFSGFRVPARM 326
           PS  G  ++  +    NP Q    Q   N S    G G G         S S        
Sbjct: 134 PSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGG 193

Query: 327 QGNEEHSGGNG 359
            GN++ SGG G
Sbjct: 194 YGNQDQSGGGG 204

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>TYPH_YERPS (Q66EV9) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDK 365
           N P+  +H  GG+   V+++  GP V+  G  VP        H+GG  DK
Sbjct: 78  NGPLVDKHSTGGVG-DVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDK 126

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>TYPH_YERPE (Q74PY8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDK 365
           N P+  +H  GG+   V+++  GP V+  G  VP        H+GG  DK
Sbjct: 78  NGPLVDKHSTGGVG-DVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDK 126

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>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)|
          Length = 1067

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 33/128 (25%), Positives = 45/128 (35%), Gaps = 6/128 (4%)
 Frame = +3

Query: 9    GAEPRMMPWNVPDPGGGSTGGYLFNVSQQAAHMQAAL-----SGQSQFFFQRGPLQSSNQ 173
            G  P  +P   P PGG ++  Y    +    H           G S   F  GP Q S+ 
Sbjct: 868  GPSPYPLP---PPPGGTNSNDYSSQGNNYQGHGNFDFPHGNPGGTSMNDFMHGPPQLSHP 924

Query: 174  PSDRGWPETVEADDNNPMQQ-QHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSG 350
            P        +E   ++PMQ+   H G  +    +I  G  V       P+   G   H  
Sbjct: 925  PDMPNNMAALEKPLSHPMQETMPHAGSSDQPHPSIQQGLHVPH-----PSSQSGPPLHHS 979

Query: 351  GNGDKPPS 374
            G    PPS
Sbjct: 980  GAPPPPPS 987

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>PRIO_SHEEP (P23907) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>PRIO_RUPRU (Q5XVM4) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>PRIO_OVIMU (Q7JK02) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>PRIO_OVIMO (Q7JIY2) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>PRIO_OVICA (Q7JIH3) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>PRIO_CAPHI (P52113) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>PRIO_BUDTA (Q95M08) Major prion protein precursor (PrP) (CD230 antigen)|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>PRIO2_BOVIN (Q01880) Major prion protein 2 precursor (PrP) (Major|
           scrapie-associated fibril protein 2)
          Length = 256

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
 Frame = +3

Query: 42  PDPGGG-STGGYLFNVSQQAAHMQAALSGQSQFFFQRGPLQSSN---QPSDRGWPETVEA 209
           P PGGG +TGG  +              GQ      R P Q      QP   GW +    
Sbjct: 28  PKPGGGWNTGGSRY-------------PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 74

Query: 210 DDNNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGG 353
               P     H GG        G+G G S S +  P++ + N +H  G
Sbjct: 75  GWGQP-----HGGGWGQPHGGGGWGQGGSHSQWNKPSKPKTNMKHVAG 117

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>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 24  MMPWNVPDPGGGSTGGYLFNVSQQAAHMQAAL-SGQSQFFFQRGPLQSS 167
           M+P+NV + GGGS GG L    Q +      L +G S      G + SS
Sbjct: 1   MLPYNVRNAGGGSVGGILRRTGQGSGTGSTILGNGNSPGALGAGKVSSS 49

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>DEAF1_PANTR (O77562) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR)
          Length = 565

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 PLSAACICAACCDTLNR*PPV 62
           P +A+C CAACCD +    PV
Sbjct: 274 PHAASCTCAACCDNMTLSGPV 294

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>TYPH_SALTY (Q7CP66) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDK 365
           N P+  +H  GG+   V+++  GP V+  G  VP        H+GG  DK
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDK 126

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>TYPH_SALTI (Q8XF46) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDK 365
           N P+  +H  GG+   V+++  GP V+  G  VP        H+GG  DK
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDK 126

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>TYPH_SALPA (Q5PK22) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDK 365
           N P+  +H  GG+   V+++  GP V+  G  VP        H+GG  DK
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDK 126

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>TYPH_SALCH (Q57G40) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 440

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 216 NNPMQQQHHQGGLNPSVSAIGFGPGVSFSGFRVPARMQGNEEHSGGNGDK 365
           N P+  +H  GG+   V+++  GP V+  G  VP        H+GG  DK
Sbjct: 78  NGPIVDKHSTGGVG-DVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDK 126

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>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear|
           protein) (Le protein)
          Length = 671

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 313 TRNPEKLTPGPNPMADTEGFKP 248
           +R+P+  +PGP+P AD  GFKP
Sbjct: 473 SRSPD--SPGPSPSADRTGFKP 492

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>DEAF1_MOUSE (Q9Z1T5) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR)
          Length = 566

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 PLSAACICAACCDTLNR*PPV 62
           P +A+C CAACCD +    PV
Sbjct: 275 PHAASCTCAACCDDMTLSGPV 295

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>DEAF1_RAT (O88450) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR) (Suppressin)
          Length = 565

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 PLSAACICAACCDTLNR*PPV 62
           P +A+C CAACCD +    PV
Sbjct: 274 PHAASCTCAACCDDMTLSGPV 294

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>DEAF1_HUMAN (O75398) Deformed epidermal autoregulatory factor 1 homolog|
           (Nuclear DEAF-1-related transcriptional regulator)
           (NUDR) (Suppressin) (Zinc finger MYND domain-containing
           protein 5)
          Length = 565

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 PLSAACICAACCDTLNR*PPV 62
           P +A+C CAACCD +    PV
Sbjct: 274 PHAASCTCAACCDDMTLSGPV 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,442,221
Number of Sequences: 219361
Number of extensions: 1551487
Number of successful extensions: 5992
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 5578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5977
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result