| Clone Name | bags22h05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H09, full insert sequence Length = 1447 Score = 432 bits (218), Expect = e-118 Identities = 434/506 (85%) Strand = Plus / Plus Query: 7 ggaggacacccctaacttcgttggatccttctactccaaaacaaaggccatggttgagga 66 ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct: 546 ggaggacacgcccaacttcgtcggatcattctactccaaaaccaaggccatggttgagga 605 Query: 67 actgctgaagaattacgaaaacgtgtgcacccttcgtgtaaggatgcctatttcatctga 126 |||||| || || ||||| || || || || |||||||||||||||||||||||||| || Sbjct: 606 actgctaaaaaactacgagaatgtatgtacacttcgtgtaaggatgcctatttcatccga 665 Query: 127 tttgtccaatcctcgcaatttcatcacaaagatcacccggtatgataaggttgtggatat 186 | | |||||||||||||| |||||||| || ||| ||||||||||||| || || ||||| Sbjct: 666 tctatccaatcctcgcaacttcatcactaaaatcgcccggtatgataaagtggttgatat 725 Query: 187 cccaaattcaatgacaatattggatgaacttcttcccatctcaattgagatggcgaagag 246 |||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 726 accaaattcaatgacaatattggatgagcttcttcctatctcaatcgaaatggcaaagag 785 Query: 247 aaacctcaccggaatctggaacttcactaatcctggtgtggtgagccacaatgagatact 306 ||||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||| | Sbjct: 786 aaacctcactgggatctggaatttcactaatcctggcgtggtgagccacaatgaaatatt 845 Query: 307 ggagatgtacagggattacatcgatccaaacttctcctggaagaacttcaacttggagga 366 ||| ||||| ||||||||||| ||||| || || || ||||||||||| | | ||||||| Sbjct: 846 ggaaatgtatagggattacattgatccgaatttttcttggaagaactttaccctggagga 905 Query: 367 gcaagccaaggtcatagtagcaccgaggagcaacaatgaacttgacactgttaaattgaa 426 |||||||||||||||||| |||||||| ||||| ||||| ||||| | || |||| Sbjct: 906 gcaagccaaggtcatagttgcaccgagaagcaataatgagcttgattgtaccaagctgaa 965 Query: 427 aacggagttcccagaacttctgtcaatcaaggagtcgctgatcaaaaacgttttcaaacc 486 |||| || ||||||||| ||||||||||||| || ||| | | | |||||||| || Sbjct: 966 ggcggaatttccagaacttttgtcaatcaaggattctctggtaaggtatgttttcaagcc 1025 Query: 487 aaatcagaagacatccaaggcttgac 512 |||||||||||| ||||||||||||| Sbjct: 1026 aaatcagaagacgtccaaggcttgac 1051
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 371 bits (187), Expect = 2e-99 Identities = 388/455 (85%) Strand = Plus / Plus Query: 58 ggttgaggaactgctgaagaattacgaaaacgtgtgcacccttcgtgtaaggatgcctat 117 ||||||||||||||| || || ||||| || || || || |||||||||||||||||||| Sbjct: 27730784 ggttgaggaactgctaaaaaactacgagaatgtatgtacacttcgtgtaaggatgcctat 27730843 Query: 118 ttcatctgatttgtccaatcctcgcaatttcatcacaaagatcacccggtatgataaggt 177 |||||| ||| | |||||||||||||| |||||||| || ||| ||||||||||||| || Sbjct: 27730844 ttcatccgatctatccaatcctcgcaacttcatcactaaaatcgcccggtatgataaagt 27730903 Query: 178 tgtggatatcccaaattcaatgacaatattggatgaacttcttcccatctcaattgagat 237 || ||||| |||||||||||||||||||||||||| |||||||| |||||||| || || Sbjct: 27730904 ggttgatataccaaattcaatgacaatattggatgagcttcttcctatctcaatcgaaat 27730963 Query: 238 ggcgaagagaaacctcaccggaatctggaacttcactaatcctggtgtggtgagccacaa 297 ||| |||||||||||||| || |||||||| |||||||||||||| |||||||||||||| Sbjct: 27730964 ggcaaagagaaacctcactgggatctggaatttcactaatcctggcgtggtgagccacaa 27731023 Query: 298 tgagatactggagatgtacagggattacatcgatccaaacttctcctggaagaacttcaa 357 ||| ||| |||| ||||| ||||||||||| ||||| || || || ||||||||||| | Sbjct: 27731024 tgaaatattggaaatgtatagggattacattgatccgaatttttcttggaagaactttac 27731083 Query: 358 cttggaggagcaagccaaggtcatagtagcaccgaggagcaacaatgaacttgacactgt 417 | ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| | Sbjct: 27731084 cctggaggagcaagccaaggtcatagttgcaccgagaagcaataatgagcttgattgtac 27731143 Query: 418 taaattgaaaacggagttcccagaacttctgtcaatcaaggagtcgctgatcaaaaacgt 477 || |||| |||| || ||||||||| ||||||||||||| || ||| | | | || Sbjct: 27731144 caagctgaaggcggaatttccagaacttttgtcaatcaaggattctctggtaaggtatgt 27731203 Query: 478 tttcaaaccaaatcagaagacatccaaggcttgac 512 |||||| |||||||||||||| ||||||||||||| Sbjct: 27731204 tttcaagccaaatcagaagacgtccaaggcttgac 27731238 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 7 ggaggacacccctaacttcgttggatccttctactccaaaacaaaggccatggt 60 ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||| Sbjct: 27728422 ggaggacacgcccaacttcgtcggatcattctactccaaaaccaaggccatggt 27728475
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 371 bits (187), Expect = 2e-99 Identities = 388/455 (85%) Strand = Plus / Plus Query: 58 ggttgaggaactgctgaagaattacgaaaacgtgtgcacccttcgtgtaaggatgcctat 117 ||||||||||||||| || || ||||| || || || || |||||||||||||||||||| Sbjct: 16117 ggttgaggaactgctaaaaaactacgagaatgtatgtacacttcgtgtaaggatgcctat 16176 Query: 118 ttcatctgatttgtccaatcctcgcaatttcatcacaaagatcacccggtatgataaggt 177 |||||| ||| | |||||||||||||| |||||||| || ||| ||||||||||||| || Sbjct: 16177 ttcatccgatctatccaatcctcgcaacttcatcactaaaatcgcccggtatgataaagt 16236 Query: 178 tgtggatatcccaaattcaatgacaatattggatgaacttcttcccatctcaattgagat 237 || ||||| |||||||||||||||||||||||||| |||||||| |||||||| || || Sbjct: 16237 ggttgatataccaaattcaatgacaatattggatgagcttcttcctatctcaatcgaaat 16296 Query: 238 ggcgaagagaaacctcaccggaatctggaacttcactaatcctggtgtggtgagccacaa 297 ||| |||||||||||||| || |||||||| |||||||||||||| |||||||||||||| Sbjct: 16297 ggcaaagagaaacctcactgggatctggaatttcactaatcctggcgtggtgagccacaa 16356 Query: 298 tgagatactggagatgtacagggattacatcgatccaaacttctcctggaagaacttcaa 357 ||| ||| |||| ||||| ||||||||||| ||||| || || || ||||||||||| | Sbjct: 16357 tgaaatattggaaatgtatagggattacattgatccgaatttttcttggaagaactttac 16416 Query: 358 cttggaggagcaagccaaggtcatagtagcaccgaggagcaacaatgaacttgacactgt 417 | ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| | Sbjct: 16417 cctggaggagcaagccaaggtcatagttgcaccgagaagcaataatgagcttgattgtac 16476 Query: 418 taaattgaaaacggagttcccagaacttctgtcaatcaaggagtcgctgatcaaaaacgt 477 || |||| |||| || ||||||||| ||||||||||||| || ||| | | | || Sbjct: 16477 caagctgaaggcggaatttccagaacttttgtcaatcaaggattctctggtaaggtatgt 16536 Query: 478 tttcaaaccaaatcagaagacatccaaggcttgac 512 |||||| |||||||||||||| ||||||||||||| Sbjct: 16537 tttcaagccaaatcagaagacgtccaaggcttgac 16571 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 7 ggaggacacccctaacttcgttggatccttctactccaaaacaaaggccatggt 60 ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||| Sbjct: 13755 ggaggacacgcccaacttcgtcggatcattctactccaaaaccaaggccatggt 13808
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 371 bits (187), Expect = 2e-99 Identities = 388/455 (85%) Strand = Plus / Plus Query: 58 ggttgaggaactgctgaagaattacgaaaacgtgtgcacccttcgtgtaaggatgcctat 117 ||||||||||||||| || || ||||| || || || || |||||||||||||||||||| Sbjct: 116650 ggttgaggaactgctaaaaaactacgagaatgtatgtacacttcgtgtaaggatgcctat 116709 Query: 118 ttcatctgatttgtccaatcctcgcaatttcatcacaaagatcacccggtatgataaggt 177 |||||| ||| | |||||||||||||| |||||||| || ||| ||||||||||||| || Sbjct: 116710 ttcatccgatctatccaatcctcgcaacttcatcactaaaatcgcccggtatgataaagt 116769 Query: 178 tgtggatatcccaaattcaatgacaatattggatgaacttcttcccatctcaattgagat 237 || ||||| |||||||||||||||||||||||||| |||||||| |||||||| || || Sbjct: 116770 ggttgatataccaaattcaatgacaatattggatgagcttcttcctatctcaatcgaaat 116829 Query: 238 ggcgaagagaaacctcaccggaatctggaacttcactaatcctggtgtggtgagccacaa 297 ||| |||||||||||||| || |||||||| |||||||||||||| |||||||||||||| Sbjct: 116830 ggcaaagagaaacctcactgggatctggaatttcactaatcctggcgtggtgagccacaa 116889 Query: 298 tgagatactggagatgtacagggattacatcgatccaaacttctcctggaagaacttcaa 357 ||| ||| |||| ||||| ||||||||||| ||||| || || || ||||||||||| | Sbjct: 116890 tgaaatattggaaatgtatagggattacattgatccgaatttttcttggaagaactttac 116949 Query: 358 cttggaggagcaagccaaggtcatagtagcaccgaggagcaacaatgaacttgacactgt 417 | ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| | Sbjct: 116950 cctggaggagcaagccaaggtcatagttgcaccgagaagcaataatgagcttgattgtac 117009 Query: 418 taaattgaaaacggagttcccagaacttctgtcaatcaaggagtcgctgatcaaaaacgt 477 || |||| |||| || ||||||||| ||||||||||||| || ||| | | | || Sbjct: 117010 caagctgaaggcggaatttccagaacttttgtcaatcaaggattctctggtaaggtatgt 117069 Query: 478 tttcaaaccaaatcagaagacatccaaggcttgac 512 |||||| |||||||||||||| ||||||||||||| Sbjct: 117070 tttcaagccaaatcagaagacgtccaaggcttgac 117104 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 7 ggaggacacccctaacttcgttggatccttctactccaaaacaaaggccatggt 60 ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||| Sbjct: 114288 ggaggacacgcccaacttcgtcggatcattctactccaaaaccaaggccatggt 114341
>gb|AY104924.1| Zea mays PCO065449 mRNA sequence Length = 1135 Score = 172 bits (87), Expect = 9e-40 Identities = 150/171 (87%) Strand = Plus / Plus Query: 7 ggaggacacccctaacttcgttggatccttctactccaaaacaaaggccatggttgagga 66 ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 582 ggaggacacgcccaacttcgtcggatcattctactccaaaaccaaggccatggtagagga 641 Query: 67 actgctgaagaattacgaaaacgtgtgcacccttcgtgtaaggatgcctatttcatctga 126 | |||| ||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| || Sbjct: 642 attgctcaagaactacgagaacgtatgcacccttcgtgtgaggatgcctatctcatcgga 701 Query: 127 tttgtccaatcctcgcaatttcatcacaaagatcacccggtatgataaggt 177 | | || ||||||||||| |||||||| || ||||||||||| |||||||| Sbjct: 702 tctctcgaatcctcgcaacttcatcaccaaaatcacccggtacgataaggt 752
>gb|AF051236.1|AF051236 Picea mariana hypothetical protein (Sb50) mRNA, partial cds Length = 1139 Score = 168 bits (85), Expect = 1e-38 Identities = 286/353 (81%) Strand = Plus / Plus Query: 29 ggatccttctactccaaaacaaaggccatggttgaggaactgctgaagaattacgaaaac 88 ||||||| ||| || || || |||||||||||||| || ||||||||||| | ||| ||| Sbjct: 336 ggatcctactattctaagacgaaggccatggttgaagatctgctgaagaacttcgagaac 395 Query: 89 gtgtgcacccttcgtgtaaggatgcctatttcatctgatttgtccaatcctcgcaatttc 148 || ||||| || || || |||||||| ||||| || ||| |||| || |||||||| ||| Sbjct: 396 gtatgcactctgcgagtcaggatgcccatttcttcagatctgtcgaaccctcgcaacttc 455 Query: 149 atcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaatattg 208 ||||| |||||| |||| ||||| ||||| || | ||||| ||||| ||||| || | Sbjct: 456 atcaccaagatctcccgctatgacaaggtcgtcaacatccccaattccatgaccattctc 515 Query: 209 gatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaac 268 || || ||||| || || || || |||||||||||| | ||||| || ||||| ||||| Sbjct: 516 gacgagcttctgccgatttcgatagagatggcgaagcggaaccttacaggaatttggaat 575 Query: 269 ttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatc 328 ||||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| |||||| Sbjct: 576 ttcacgaaccctggggtggttagccacaacgagatcctggagatgtacagggactacatc 635 Query: 329 gatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcat 381 ||||| | || | |||| ||| |||| | |||||||||| ||||||||||| Sbjct: 636 gatccgagctatacttggaggaatttcaccctggaggagcaggccaaggtcat 688
>gb|AY088123.1| Arabidopsis thaliana clone 41505 mRNA, complete sequence Length = 1211 Score = 115 bits (58), Expect = 2e-22 Identities = 214/266 (80%) Strand = Plus / Plus Query: 146 ttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaata 205 |||||||| ||||| | |||||||| || |||||||| |||||||| || |||||||| Sbjct: 613 ttcatcacgaagattgctcggtatgagaaagttgtggacatcccaaactcgatgacaatc 672 Query: 206 ttggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgg 265 | ||||| ||||| || || ||||| || ||||||||||| ||| | ||||| |||| Sbjct: 673 ctcgatgagcttctcccgatatcaatcgaaatggcgaagaggaacttaaccgggatctac 732 Query: 266 aacttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattac 325 || ||||||||||| ||||| ||||||||||| ||||| ||||||||||||| || ||| Sbjct: 733 aatttcactaatccgggtgttgtgagccacaacgagatcttggagatgtacagagactac 792 Query: 326 atcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcatagta 385 || || || | || | ||||||||||||| |||||||| ||||| || || || || Sbjct: 793 attgacccgagttttacttggaagaacttcacattggaggaacaagctaaagtgattgtg 852 Query: 386 gcaccgaggagcaacaatgaacttga 411 || || ||||| |||||||| ||||| Sbjct: 853 gcgccaaggagtaacaatgagcttga 878
>ref|NM_104978.3| Arabidopsis thaliana NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) AT1G63000 (NRS/ER) mRNA, complete cds Length = 1265 Score = 107 bits (54), Expect = 4e-20 Identities = 213/266 (80%) Strand = Plus / Plus Query: 146 ttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaata 205 |||||||| ||||| | |||||||| || |||||||| |||||||| || |||||||| Sbjct: 655 ttcatcacgaagattgctcggtatgagaaagttgtggacatcccaaactcgatgacaatc 714 Query: 206 ttggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgg 265 | ||||| ||||| || || ||||| || ||||||||||| ||| | ||||| |||| Sbjct: 715 ctcgatgagcttctcccgatatcaatcgaaatggcgaagaggaacttaaccgggatctac 774 Query: 266 aacttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattac 325 || |||||||| || ||||| ||||||||||| ||||| ||||||||||||| || ||| Sbjct: 775 aatttcactaacccgggtgttgtgagccacaacgagatcttggagatgtacagagactac 834 Query: 326 atcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcatagta 385 || || || | || | ||||||||||||| |||||||| ||||| || || || || Sbjct: 835 attgacccgagttttacttggaagaacttcacattggaggaacaagctaaagtgattgtg 894 Query: 386 gcaccgaggagcaacaatgaacttga 411 || || ||||| |||||||| ||||| Sbjct: 895 gcgccaaggagtaacaatgagcttga 920
>gb|AY513232.1| Arabidopsis thaliana 3,5-epimerase/4-reductase (NRS/ER) mRNA, complete cds Length = 906 Score = 107 bits (54), Expect = 4e-20 Identities = 213/266 (80%) Strand = Plus / Plus Query: 146 ttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaata 205 |||||||| ||||| | |||||||| || |||||||| |||||||| || |||||||| Sbjct: 538 ttcatcacgaagattgctcggtatgagaaagttgtggacatcccaaactcgatgacaatc 597 Query: 206 ttggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgg 265 | ||||| ||||| || || ||||| || ||||||||||| ||| | ||||| |||| Sbjct: 598 ctcgatgagcttctcccgatatcaatcgaaatggcgaagaggaacttaaccgggatctac 657 Query: 266 aacttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattac 325 || |||||||| || ||||| ||||||||||| ||||| ||||||||||||| || ||| Sbjct: 658 aatttcactaacccgggtgttgtgagccacaacgagatcttggagatgtacagagactac 717 Query: 326 atcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcatagta 385 || || || | || | ||||||||||||| |||||||| ||||| || || || || Sbjct: 718 attgacccgagttttacttggaagaacttcacattggaggaacaagctaaagtgattgtg 777 Query: 386 gcaccgaggagcaacaatgaacttga 411 || || ||||| |||||||| ||||| Sbjct: 778 gcgccaaggagtaacaatgagcttga 803
>gb|AF332445.1| Arabidopsis thaliana clone C00141 (e) unknown protein (At1g63000) mRNA, complete cds Length = 906 Score = 107 bits (54), Expect = 4e-20 Identities = 213/266 (80%) Strand = Plus / Plus Query: 146 ttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaata 205 |||||||| ||||| | |||||||| || |||||||| |||||||| || |||||||| Sbjct: 538 ttcatcacgaagattgctcggtatgagaaagttgtggacatcccaaactcgatgacaatc 597 Query: 206 ttggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgg 265 | ||||| ||||| || || ||||| || ||||||||||| ||| | ||||| |||| Sbjct: 598 ctcgatgagcttctcccgatatcaatcgaaatggcgaagaggaacttaaccgggatctac 657 Query: 266 aacttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattac 325 || |||||||| || ||||| ||||||||||| ||||| ||||||||||||| || ||| Sbjct: 658 aatttcactaacccgggtgttgtgagccacaacgagatcttggagatgtacagagactac 717 Query: 326 atcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcatagta 385 || || || | || | ||||||||||||| |||||||| ||||| || || || || Sbjct: 718 attgacccgagttttacttggaagaacttcacattggaggaacaagctaaagtgattgtg 777 Query: 386 gcaccgaggagcaacaatgaacttga 411 || || ||||| |||||||| ||||| Sbjct: 778 gcgccaaggagtaacaatgagcttga 803
>gb|AF387005.1|AF387005 Arabidopsis thaliana Unknown protein (F16P17.17) mRNA, complete cds Length = 1230 Score = 107 bits (54), Expect = 4e-20 Identities = 213/266 (80%) Strand = Plus / Plus Query: 146 ttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaata 205 |||||||| ||||| | |||||||| || |||||||| |||||||| || |||||||| Sbjct: 615 ttcatcacgaagattgctcggtatgagaaagttgtggacatcccaaactcgatgacaatc 674 Query: 206 ttggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgg 265 | ||||| ||||| || || ||||| || ||||||||||| ||| | ||||| |||| Sbjct: 675 ctcgatgagcttctcccgatatcaatcgaaatggcgaagaggaacttaaccgggatctac 734 Query: 266 aacttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattac 325 || |||||||| || ||||| ||||||||||| ||||| ||||||||||||| || ||| Sbjct: 735 aatttcactaacccgggtgttgtgagccacaacgagatcttggagatgtacagagactac 794 Query: 326 atcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcatagta 385 || || || | || | ||||||||||||| |||||||| ||||| || || || || Sbjct: 795 attgacccgagttttacttggaagaacttcacattggaggaacaagctaaagtgattgtg 854 Query: 386 gcaccgaggagcaacaatgaacttga 411 || || ||||| |||||||| ||||| Sbjct: 855 gcgccaaggagtaacaatgagcttga 880
>emb|BX815284.1|CNS0AAH5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS49ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1224 Score = 107 bits (54), Expect = 4e-20 Identities = 213/266 (80%) Strand = Plus / Plus Query: 146 ttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaata 205 |||||||| ||||| | |||||||| || |||||||| |||||||| || |||||||| Sbjct: 655 ttcatcacgaagattgctcggtatgagaaagttgtggacatcccaaactcgatgacaatc 714 Query: 206 ttggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgg 265 | ||||| ||||| || || ||||| || ||||||||||| ||| | ||||| |||| Sbjct: 715 ctcgatgagcttctcccgatatcaatcgaaatggcgaagaggaacttaaccgggatctac 774 Query: 266 aacttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattac 325 || |||||||| || ||||| ||||||||||| ||||| ||||||||||||| || ||| Sbjct: 775 aatttcactaacccgggtgttgtgagccacaacgagatcttggagatgtacagagactac 834 Query: 326 atcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcatagta 385 || || || | || | ||||||||||||| |||||||| ||||| || || || || Sbjct: 835 attgacccgagttttacttggaagaacttcacattggaggaacaagctaaagtgattgtg 894 Query: 386 gcaccgaggagcaacaatgaacttga 411 || || ||||| |||||||| ||||| Sbjct: 895 gcgccaaggagtaacaatgagcttga 920
>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 98412 Score = 107 bits (54), Expect = 4e-20 Identities = 213/266 (80%) Strand = Plus / Plus Query: 146 ttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattcaatgacaata 205 |||||||| ||||| | |||||||| || |||||||| |||||||| || |||||||| Sbjct: 69858 ttcatcacgaagattgctcggtatgagaaagttgtggacatcccaaactcgatgacaatc 69917 Query: 206 ttggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgg 265 | ||||| ||||| || || ||||| || ||||||||||| ||| | ||||| |||| Sbjct: 69918 ctcgatgagcttctcccgatatcaatcgaaatggcgaagaggaacttaaccgggatctac 69977 Query: 266 aacttcactaatcctggtgtggtgagccacaatgagatactggagatgtacagggattac 325 || |||||||| || ||||| ||||||||||| ||||| ||||||||||||| || ||| Sbjct: 69978 aatttcactaacccgggtgttgtgagccacaacgagatcttggagatgtacagagactac 70037 Query: 326 atcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaaggtcatagta 385 || || || | || | ||||||||||||| |||||||| ||||| || || || || Sbjct: 70038 attgacccgagttttacttggaagaacttcacattggaggaacaagctaaagtgattgtg 70097 Query: 386 gcaccgaggagcaacaatgaacttga 411 || || ||||| |||||||| ||||| Sbjct: 70098 gcgccaaggagtaacaatgagcttga 70123
>gb|AF359122.1| Pinus sylvestris isolate plus tree E1101 putative dTDP-glucose 4,6-dehydratase gene, partial cds Length = 212 Score = 97.6 bits (49), Expect = 4e-17 Identities = 106/125 (84%) Strand = Plus / Plus Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 ||||| ||||| ||||| || ||||| || || |||||||||||||| |||||||||||| Sbjct: 19 ggaatttggaatttcacgaaccctggggttgttagccacaatgagatcctggagatgtac 78 Query: 317 agggattacatcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaag 376 ||||| ||||||||||| | || | |||||||| |||| | |||||||||| |||||| Sbjct: 79 agggactacatcgatccgagctatacttggaagaatttcaccctggaggagcaggccaag 138 Query: 377 gtcat 381 ||||| Sbjct: 139 gtcat 143
>gb|BT014616.1| Lycopersicon esculentum clone 134102R, mRNA sequence Length = 2345 Score = 91.7 bits (46), Expect = 3e-15 Identities = 160/198 (80%) Strand = Plus / Plus Query: 137 cctcgcaatttcatcacaaagatcacccggtatgataaggttgtggatatcccaaattca 196 |||||||||||||| || ||||||| ||| ||| ||||||| || |||| || || Sbjct: 1769 cctcgcaatttcattaccaagatcagccgctataataaggtggtcaatattcctaacagt 1828 Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 ||||| ||||||||||| |||||||| || |||||||||||||| ||| | || |||| Sbjct: 1829 atgaccatattggatgagcttcttcctatttcaattgagatggcaaagcgtaatctcaga 1888 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || || ||||| ||||| || || ||||| |||||||| ||||||||| |||| |||||| Sbjct: 1889 ggcatatggaatttcacaaacccgggtgttgtgagccataatgagatattggaaatgtac 1948 Query: 317 agggattacatcgatcca 334 | | | || ||||||||| Sbjct: 1949 aagaaatatatcgatcca 1966
>ref|NM_106505.3| Arabidopsis thaliana ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); transferase, transferring glycosyl groups AT1G78580 (ATTPS1) mRNA, complete cds Length = 4635 Score = 89.7 bits (45), Expect = 1e-14 Identities = 90/105 (85%) Strand = Plus / Minus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || ||||||||||| |||||| | | ||||||||||||||||| || || ||| Sbjct: 3480 atctccatcgagatggcgaaaagaaacttgaaaggaatctggaacttcacaaacccaggt 3421 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatc 328 |||||||||||||| ||||| || ||||||||||| || |||||| Sbjct: 3420 gtggtgagccacaacgagatcctagagatgtacagagactacatc 3376
>ref|NM_106504.2| Arabidopsis thaliana RHM1; NAD binding / catalytic AT1G78570 (RHM1) transcript variant AT1G78570.1 mRNA, complete cds Length = 2744 Score = 89.7 bits (45), Expect = 1e-14 Identities = 90/105 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || ||||||||||| |||||| | | ||||||||||||||||| || || ||| Sbjct: 1907 atctccatcgagatggcgaaaagaaacttgaaaggaatctggaacttcacaaacccaggt 1966 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatc 328 |||||||||||||| ||||| || ||||||||||| || |||||| Sbjct: 1967 gtggtgagccacaacgagatcctagagatgtacagagactacatc 2011
>ref|NM_001036220.1| Arabidopsis thaliana RHM1; NAD binding / catalytic AT1G78570 (RHM1) transcript variant AT1G78570.2 mRNA, complete cds Length = 2912 Score = 89.7 bits (45), Expect = 1e-14 Identities = 90/105 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || ||||||||||| |||||| | | ||||||||||||||||| || || ||| Sbjct: 2041 atctccatcgagatggcgaaaagaaacttgaaaggaatctggaacttcacaaacccaggt 2100 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatc 328 |||||||||||||| ||||| || ||||||||||| || |||||| Sbjct: 2101 gtggtgagccacaacgagatcctagagatgtacagagactacatc 2145
>gb|AC007260.2| Arabidopsis thaliana chromosome I BAC T30F21 genomic sequence, complete sequence Length = 78378 Score = 89.7 bits (45), Expect = 1e-14 Identities = 90/105 (85%) Strand = Plus / Minus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || ||||||||||| |||||| | | ||||||||||||||||| || || ||| Sbjct: 38819 atctccatcgagatggcgaaaagaaacttgaaaggaatctggaacttcacaaacccaggt 38760 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatc 328 |||||||||||||| ||||| || ||||||||||| || |||||| Sbjct: 38759 gtggtgagccacaacgagatcctagagatgtacagagactacatc 38715
>gb|AY081471.1| Arabidopsis thaliana similar to dTDP-D-glucose 4,6-dehydratase (At1g78570) mRNA, complete cds Length = 2126 Score = 89.7 bits (45), Expect = 1e-14 Identities = 90/105 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || ||||||||||| |||||| | | ||||||||||||||||| || || ||| Sbjct: 1732 atctccatcgagatggcgaaaagaaacttgaaaggaatctggaacttcacaaacccaggt 1791 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatc 328 |||||||||||||| ||||| || ||||||||||| || |||||| Sbjct: 1792 gtggtgagccacaacgagatcctagagatgtacagagactacatc 1836
>gb|AF359121.1| Pinus sylvestris isolate plus tree E635C putative dTDP-glucose 4,6-dehydratase gene, partial cds Length = 212 Score = 89.7 bits (45), Expect = 1e-14 Identities = 105/125 (84%) Strand = Plus / Plus Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 ||||| ||||| ||||| || ||||| || || |||||||| ||||| |||||||||||| Sbjct: 19 ggaatttggaatttcacgaaccctggggttgttagccacaacgagatcctggagatgtac 78 Query: 317 agggattacatcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaag 376 ||||| ||||||||||| | || | |||||||| |||| | |||||||||| |||||| Sbjct: 79 agggactacatcgatccgagctatacttggaagaatttcaccctggaggagcaggccaag 138 Query: 377 gtcat 381 ||||| Sbjct: 139 gtcat 143
>gb|AY042833.1| Arabidopsis thaliana Similar to dTDP-D-glucose 4,6-dehydratase (T30F21.10) mRNA, complete cds Length = 2347 Score = 89.7 bits (45), Expect = 1e-14 Identities = 90/105 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || ||||||||||| |||||| | | ||||||||||||||||| || || ||| Sbjct: 1907 atctccatcgagatggcgaaaagaaacttgaaaggaatctggaacttcacaaacccaggt 1966 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatc 328 |||||||||||||| ||||| || ||||||||||| || |||||| Sbjct: 1967 gtggtgagccacaacgagatcctagagatgtacagagactacatc 2011
>emb|BX815784.1|CNS0AAK8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS94ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2309 Score = 89.7 bits (45), Expect = 1e-14 Identities = 90/105 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || ||||||||||| |||||| | | ||||||||||||||||| || || ||| Sbjct: 1908 atctccatcgagatggcgaaaagaaacttgaaaggaatctggaacttcacaaacccaggt 1967 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatc 328 |||||||||||||| ||||| || ||||||||||| || |||||| Sbjct: 1968 gtggtgagccacaacgagatcctagagatgtacagagactacatc 2012
>ref|NM_104228.3| Arabidopsis thaliana MUM4 (MUCILAGE-MODIFIED 4); catalytic AT1G53500 (MUM4) mRNA, complete cds Length = 2526 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 2026 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 2085 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 2086 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 2141 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 ttctactccaaaacaaaggccatggttgagga 66 |||||||| ||||| || |||||||||||||| Sbjct: 1846 ttctactcgaaaaccaaagccatggttgagga 1877
>gb|AY328518.1| Arabidopsis thaliana putative UDP-L-rhamnose synthase MUM4 (MUM4) mRNA, complete cds Length = 2479 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 2027 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 2086 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 2087 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 2142
>emb|AJ565874.1|ATH565874 Arabidopsis thaliana mRNA for putative NDP-rhamnose synthase (rhm2 gene) Length = 2004 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 1717 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 1776 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 1777 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 1832 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 ttctactccaaaacaaaggccatggttgagga 66 |||||||| ||||| || |||||||||||||| Sbjct: 1537 ttctactcgaaaaccaaagccatggttgagga 1568
>gb|AY048277.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, complete cds Length = 1739 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 1287 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 1346 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 1347 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 1402 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 ttctactccaaaacaaaggccatggttgagga 66 |||||||| ||||| || |||||||||||||| Sbjct: 1107 ttctactcgaaaaccaaagccatggttgagga 1138
>emb|BX817582.1|CNS0AEDB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL31ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 525 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 31 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 90 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 91 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 146
>gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22G10 genomic sequence, complete sequence Length = 111936 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 104741 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 104800 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 104801 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 104856
>gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete sequence Length = 99960 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 63647 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 63706 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 63707 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 63762
>gb|BT002264.1| Arabidopsis thaliana At1g53500/F22G10_13 mRNA, complete cds Length = 1497 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 215 cttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctggaacttcact 274 ||||| || ||||| || |||||||||||||||||||| | || || ||||| ||||| Sbjct: 1210 cttctcccaatctctatcgagatggcgaagagaaacctaagaggcatatggaatttcacc 1269 Query: 275 aatcctggtgtggtgagccacaatgagatactggagatgtacagggattacatcga 330 || || || |||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 1270 aacccaggggtggtgagccacaacgagatattggagatgtacaagaattacatcga 1325 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 35 ttctactccaaaacaaaggccatggttgagga 66 |||||||| ||||| || |||||||||||||| Sbjct: 1030 ttctactcgaaaaccaaagccatggttgagga 1061
>ref|NM_112340.2| Arabidopsis thaliana RHM3; catalytic AT3G14790 (RHM3) mRNA, complete cds Length = 2332 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || |||||||||||||| ||||| | ||||| ||||||||||| ||||| || Sbjct: 1870 atctcgatcgagatggcgaagaggaacctaaggggaatatggaacttcaccaatccagga 1929 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatcga 330 |||||||||||||| |||||| | |||||||||| | ||||||||| Sbjct: 1930 gtggtgagccacaacgagatattagagatgtacaagagttacatcga 1976
>gb|AY142060.1| Arabidopsis thaliana At3g14790/T21E2_4 mRNA, complete cds Length = 1995 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || |||||||||||||| ||||| | ||||| ||||||||||| ||||| || Sbjct: 1717 atctcgatcgagatggcgaagaggaacctaaggggaatatggaacttcaccaatccagga 1776 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatcga 330 |||||||||||||| |||||| | |||||||||| | ||||||||| Sbjct: 1777 gtggtgagccacaacgagatattagagatgtacaagagttacatcga 1823
>gb|AY078958.1| Arabidopsis thaliana AT3g14790/T21E2_4 mRNA, complete cds Length = 2332 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || |||||||||||||| ||||| | ||||| ||||||||||| ||||| || Sbjct: 1870 atctcgatcgagatggcgaagaggaacctaaggggaatatggaacttcaccaatccagga 1929 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatcga 330 |||||||||||||| |||||| | |||||||||| | ||||||||| Sbjct: 1930 gtggtgagccacaacgagatattagagatgtacaagagttacatcga 1976
>dbj|AP002061.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T21E2 Length = 47466 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 224 atctcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggt 283 ||||| || |||||||||||||| ||||| | ||||| ||||||||||| ||||| || Sbjct: 10095 atctcgatcgagatggcgaagaggaacctaaggggaatatggaacttcaccaatccagga 10154 Query: 284 gtggtgagccacaatgagatactggagatgtacagggattacatcga 330 |||||||||||||| |||||| | |||||||||| | ||||||||| Sbjct: 10155 gtggtgagccacaacgagatattagagatgtacaagagttacatcga 10201
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 3e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 |||||||| |||||||| ||| | |||||||| ||||||||||||||| | || || Sbjct: 9420049 atgacaattttggatgagcttttgcccatctccattgagatggcgaagcgggactgcagg 9420108 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || || ||||||||||| |||||||| || || |||||||| ||||| |||||||||||| Sbjct: 9420109 ggcatatggaacttcaccaatcctggggttgtcagccacaacgagatcctggagatgtac 9420168 Query: 317 a 317 | Sbjct: 9420169 a 9420169
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 81.8 bits (41), Expect = 3e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 |||||||| |||||||| ||| | |||||||| ||||||||||||||| | || || Sbjct: 117449 atgacaattttggatgagcttttgcccatctccattgagatggcgaagcgggactgcagg 117508 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || || ||||||||||| |||||||| || || |||||||| ||||| |||||||||||| Sbjct: 117509 ggcatatggaacttcaccaatcctggggttgtcagccacaacgagatcctggagatgtac 117568 Query: 317 a 317 | Sbjct: 117569 a 117569
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 3e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 |||||||| |||||||| ||| | |||||||| ||||||||||||||| | || || Sbjct: 9418170 atgacaattttggatgagcttttgcccatctccattgagatggcgaagcgggactgcagg 9418229 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || || ||||||||||| |||||||| || || |||||||| ||||| |||||||||||| Sbjct: 9418230 ggcatatggaacttcaccaatcctggggttgtcagccacaacgagatcctggagatgtac 9418289 Query: 317 a 317 | Sbjct: 9418290 a 9418290
>dbj|AK103544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E05, full insert sequence Length = 2499 Score = 81.8 bits (41), Expect = 3e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 |||||||| |||||||| ||| | |||||||| ||||||||||||||| | || || Sbjct: 1869 atgacaattttggatgagcttttgcccatctccattgagatggcgaagcgggactgcagg 1928 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || || ||||||||||| |||||||| || || |||||||| ||||| |||||||||||| Sbjct: 1929 ggcatatggaacttcaccaatcctggggttgtcagccacaacgagatcctggagatgtac 1988 Query: 317 a 317 | Sbjct: 1989 a 1989
>dbj|AK064303.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B05, full insert sequence Length = 1892 Score = 81.8 bits (41), Expect = 3e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 |||||||| |||||||| ||| | |||||||| ||||||||||||||| | || || Sbjct: 1260 atgacaattttggatgagcttttgcccatctccattgagatggcgaagcgggactgcagg 1319 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || || ||||||||||| |||||||| || || |||||||| ||||| |||||||||||| Sbjct: 1320 ggcatatggaacttcaccaatcctggggttgtcagccacaacgagatcctggagatgtac 1379 Query: 317 a 317 | Sbjct: 1380 a 1380
>gb|AC182659.2| Populus trichocarpa clone Pop1-125A14, complete sequence Length = 75970 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 207 tggatgaacttcttcccatctcaattgagatggcgaagagaaacctcaccggaatctgga 266 |||| |||||||| || || |||||||||||||| ||||| ||| | | || || |||| Sbjct: 28523 tggacgaacttctacctatttcaattgagatggcaaagaggaacttgagaggcatatgga 28582 Query: 267 acttcactaatcctggtgtggtgagccacaatgagatactggagatgtaca 317 ||||||| || |||||||| |||||||| |||||||| |||||||||||| Sbjct: 28583 acttcacaaaccctggtgttgtgagccataatgagattttggagatgtaca 28633 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 362 gaggagcaagccaaggtcatagtagcaccgaggagcaacaatga 405 ||||||||||||||||| ||||| || || ||||||||||||| Sbjct: 28678 gaggagcaagccaaggtgatagttgccccccggagcaacaatga 28721
>gb|AY103981.1| Zea mays PCO118173 mRNA sequence Length = 1418 Score = 73.8 bits (37), Expect = 6e-10 Identities = 166/209 (79%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 |||||||| |||||||| ||||| |||||||| ||||||||||| || | || || Sbjct: 887 atgacaattttggatgagcttctgcccatctccattgagatggcaaaacgggactgcagg 946 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || || ||||||||||| || ||||| || || |||||||||||||| |||||||||||| Sbjct: 947 ggcatatggaacttcaccaaccctggcgttgtcagccacaatgagattctggagatgtac 1006 Query: 317 agggattacatcgatccaaacttctcctggaagaacttcaacttggaggagcaagccaag 376 | | | |||||| |||| | || |||| ||||||| | || |||||| ||||| Sbjct: 1007 aagaaatacatcaatcctgattttaagtggaccaacttcacactcgaagagcaatccaag 1066 Query: 377 gtcatagtagcaccgaggagcaacaatga 405 |||||||| ||||| || ||||||||||| Sbjct: 1067 gtcatagtcgcacctagaagcaacaatga 1095 Score = 69.9 bits (35), Expect = 1e-08 Identities = 167/211 (79%) Strand = Plus / Plus Query: 107 aggatgcctatttcatctgatttgtccaatcctcgcaatttcatcacaaagatcacccgg 166 ||||||||||| ||||| ||| | ||||||||| || |||||||||||||| | || Sbjct: 797 aggatgcctatatcatcagatctaaacaatcctcgtaacttcatcacaaagatagctcgt 856 Query: 167 tatgataaggttgtggatatcccaaattcaatgacaatattggatgaacttcttcccatc 226 || || ||||| ||| | || || || |||||||| |||||||| ||||| |||||| Sbjct: 857 tacgacaaggtggtgaacattcccaacagcatgacaattttggatgagcttctgcccatc 916 Query: 227 tcaattgagatggcgaagagaaacctcaccggaatctggaacttcactaatcctggtgtg 286 || ||||||||||| || | || || || || ||||||||||| || ||||| || Sbjct: 917 tccattgagatggcaaaacgggactgcaggggcatatggaacttcaccaaccctggcgtt 976 Query: 287 gtgagccacaatgagatactggagatgtaca 317 || |||||||||||||| ||||||||||||| Sbjct: 977 gtcagccacaatgagattctggagatgtaca 1007
>gb|AY108467.1| Zea mays PCO142331 mRNA sequence Length = 1381 Score = 60.0 bits (30), Expect = 9e-06 Identities = 108/134 (80%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaagagaaacctcacc 256 ||||| |||||||| ||||| || ||||||||| | |||||||||||||| ||||| Sbjct: 863 atgacgatattggacgaactcctgcccatctcagtggagatggcgaagaggaacctgcgg 922 Query: 257 ggaatctggaacttcactaatcctggtgtggtgagccacaatgagatactggagatgtac 316 || |||| |||||||| || || || || || |||||||| ||||| || ||||||||| Sbjct: 923 ggcatctataacttcaccaaccccggcgtcgtcagccacaacgagatcctagagatgtac 982 Query: 317 agggattacatcga 330 | | | |||||||| Sbjct: 983 aagcagtacatcga 996
>gb|BT018879.1| Zea mays clone EL01T0203E01.d mRNA sequence Length = 2108 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaa 243 |||||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct: 1621 atgacaatcttggatgagcttctgcctatctccattgagatggcgaa 1667
>gb|BT018012.1| Zea mays clone EL01N0528B06.c mRNA sequence Length = 1008 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 197 atgacaatattggatgaacttcttcccatctcaattgagatggcgaa 243 |||||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct: 307 atgacaatcttggatgagcttctgcctatctccattgagatggcgaa 353
>gb|DQ378291.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmid 47B4, complete sequence Length = 37265 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 469 caaaaacgttttcaaaccaaat 490 |||||||||||||||||||||| Sbjct: 14672 caaaaacgttttcaaaccaaat 14651
>emb|AL772303.11| Mouse DNA sequence from clone RP23-185P20 on chromosome 2, complete sequence Length = 202001 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 478 tttcaaaccaaatcagaagaca 499 |||||||||||||||||||||| Sbjct: 28888 tttcaaaccaaatcagaagaca 28867
>gb|AC102739.7| Mus musculus chromosome 5, clone RP24-309H3, complete sequence Length = 191542 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 aaacaaaggccatggttgagg 65 ||||||||||||||||||||| Sbjct: 136101 aaacaaaggccatggttgagg 136121
>ref|NM_196493.1| Oryza sativa (japonica cultivar-group) contains similarity to histone acetyltransferase GCN5 (OSJNBa0032I20.6), mRNA Length = 1752 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 491 cagaagacatccaaggcttga 511 ||||||||||||||||||||| Sbjct: 1100 cagaagacatccaaggcttga 1120
>gb|AC069356.6| Homo sapiens chromosome 18, clone RP11-575O17, complete sequence Length = 161480 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 cctatttcatctgatttgtcc 133 ||||||||||||||||||||| Sbjct: 129084 cctatttcatctgatttgtcc 129104 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 cctatttcatctgatttgtcc 133 ||||||||||||||||||||| Sbjct: 111447 cctatttcatctgatttgtcc 111467
>dbj|AK164131.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530045F09 product:unclassifiable, full insert sequence Length = 2600 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 aaacaaaggccatggttgagg 65 ||||||||||||||||||||| Sbjct: 963 aaacaaaggccatggttgagg 983
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 cagaagacatccaaggcttga 511 ||||||||||||||||||||| Sbjct: 14038060 cagaagacatccaaggcttga 14038040
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 cagaagacatccaaggcttga 511 ||||||||||||||||||||| Sbjct: 54189 cagaagacatccaaggcttga 54169
>dbj|AK111779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078H10, full insert sequence Length = 1691 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 491 cagaagacatccaaggcttga 511 ||||||||||||||||||||| Sbjct: 1215 cagaagacatccaaggcttga 1235
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 cagaagacatccaaggcttga 511 ||||||||||||||||||||| Sbjct: 14046302 cagaagacatccaaggcttga 14046282
>dbj|AB034984.1| Homo sapiens SCCA1 gene for squamous cell carcinoma antigen 1, partial cds Length = 5278 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 cctatttcatctgatttgtcc 133 ||||||||||||||||||||| Sbjct: 4481 cctatttcatctgatttgtcc 4501
>dbj|AB035089.1| Homo sapiens SCCA2 gene for squamous cell carcinoma antigen 2, complete cds Length = 11524 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 cctatttcatctgatttgtcc 133 ||||||||||||||||||||| Sbjct: 3867 cctatttcatctgatttgtcc 3887
>dbj|AB005548.1| Homo sapiens gene for squamous cell carcinoma antigen 2, partial cds Length = 7096 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 cctatttcatctgatttgtcc 133 ||||||||||||||||||||| Sbjct: 5566 cctatttcatctgatttgtcc 5586
>gb|AC153378.4| Mus musculus 6 BAC RP23-106C18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199980 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 acttcaacttggaggagcaa 370 |||||||||||||||||||| Sbjct: 29198 acttcaacttggaggagcaa 29217
>emb|AL356358.19| Human DNA sequence from clone RP11-383C12 on chromosome Xq11.1-13.1 Contains the 3' end of the AR gene for androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) and a B lymphoma Mo-MLV insertion region (mouse) (BMI1) pseudogene, complete sequence Length = 161417 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 ccaaattcaatgacaatatt 207 |||||||||||||||||||| Sbjct: 25847 ccaaattcaatgacaatatt 25866
>gb|AC008009.5| Homo sapiens 3 BAC RP11-436A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212349 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 caatttcatcacaaagatca 161 |||||||||||||||||||| Sbjct: 193569 caatttcatcacaaagatca 193588
>emb|CR533575.5| Zebrafish DNA sequence from clone CH211-215M13 in linkage group 16, complete sequence Length = 115032 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 acaatgagatactggagatgtaca 317 ||||||||| |||||||||||||| Sbjct: 26256 acaatgagaaactggagatgtaca 26279
>emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03, DP38F06 of chromosome 5 of Podospora anserina Length = 156244 Score = 40.1 bits (20), Expect = 8.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 343 ctggaagaacttcaacttggaggagcaagccaaggt 378 |||||||||||| | | | ||||||||||||||||| Sbjct: 61225 ctggaagaactttagcctcgaggagcaagccaaggt 61190
>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12 Length = 199759 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatcaaaaacgttttcaaaccaaa 489 ||||||||||||||||| |||||| Sbjct: 147992 gatcaaaaacgttttcataccaaa 147969
>gb|AC090797.5| Homo sapiens chromosome 8, clone RP11-586K2, complete sequence Length = 193929 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 caaaggccatggttgaggaactgc 71 ||||| |||||||||||||||||| Sbjct: 159080 caaagtccatggttgaggaactgc 159103
>gb|AC027259.8| Homo sapiens, clone RP11-74D11, complete sequence Length = 133807 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 caaaggccatggttgaggaactgc 71 ||||| |||||||||||||||||| Sbjct: 120856 caaagtccatggttgaggaactgc 120833
>ref|NM_072424.3| Caenorhabditis elegans F09G2.9 (F09G2.9) mRNA, complete cds Length = 1846 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 aacttcttcccatctcaatt 232 |||||||||||||||||||| Sbjct: 1419 aacttcttcccatctcaatt 1438
>gb|AF026215.1| Caenorhabditis elegans cosmid F09G2, complete sequence Length = 41087 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 aacttcttcccatctcaatt 232 |||||||||||||||||||| Sbjct: 29699 aacttcttcccatctcaatt 29680
>gb|AC155653.4| Mus musculus 6 BAC RP24-503P15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 136868 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 acttcaacttggaggagcaa 370 |||||||||||||||||||| Sbjct: 1825 acttcaacttggaggagcaa 1806
>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence Length = 99384 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 466 gatcaaaaacgttttcaaaccaaa 489 ||||||||||||||||| |||||| Sbjct: 47646 gatcaaaaacgttttcataccaaa 47623
>gb|AC006227.1|AC006227 Homo sapiens, clone hRPK.16_A_1, complete sequence Length = 153337 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 caaggcttgaccaaatggag 521 |||||||||||||||||||| Sbjct: 46520 caaggcttgaccaaatggag 46501
>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence Length = 174120 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 acttggaggagcaagccaag 376 |||||||||||||||||||| Sbjct: 12093 acttggaggagcaagccaag 12112
>gb|AC140446.5| Mus musculus BAC clone RP24-114J11 from chromosome 8, complete sequence Length = 152392 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 acttggaggagcaagccaag 376 |||||||||||||||||||| Sbjct: 80375 acttggaggagcaagccaag 80394
>gb|AC127693.4| Mus musculus BAC clone RP23-135G19 from 17, complete sequence Length = 223894 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gttcccagaacttctgtcaa 452 |||||||||||||||||||| Sbjct: 125208 gttcccagaacttctgtcaa 125189 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,473,345 Number of Sequences: 3902068 Number of extensions: 5473345 Number of successful extensions: 135716 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135343 Number of HSP's gapped (non-prelim): 368 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)