>IF3I_HUMAN (Q9Y262) Eukaryotic translation initiation factor 3 subunit|
           6-interacting protein
          Length = 564

 Score =  175 bits (443), Expect = 1e-43
 Identities = 94/195 (48%), Positives = 133/195 (68%), Gaps = 1/195 (0%)
 Frame = +1

Query: 4   MIGLLRIHCLLGDYHTGLKCLAPINLNQQGVYTIVIGSHISTIYHYGFANLMMRRYVDAT 183
           ++GLLR+H LLGDY+  +K L  I LN++ +Y+ V    ++T Y+ GFA LMMRRY DA 
Sbjct: 274 LVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAI 333

Query: 184 KEFNKILLYIIKYKQYHQKSP-QYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLK 360
           + F  ILLYI + K   Q++  +Y+ I K+NEQM+ALLAI L++ P    IDE++  QL+
Sbjct: 334 RVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMR--IDESIHLQLR 391

Query: 361 EKYNDKMTKMQRFDDEAYAAYDELFSYACPKFITPSPPVLDQPLTNYNQDAYRLQLKLFL 540
           EKY DKM +MQ+ D +    Y+ELFSY+CPKF++P  P  D    NY+++ +  QLK+F 
Sbjct: 392 EKYGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFS 448

Query: 541 YEVKQQQLLSGIRSY 585
            EV+QQ  LS IRS+
Sbjct: 449 DEVQQQAQLSTIRSF 463

>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 957

 Score = 35.8 bits (81), Expect = 0.093
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
 Frame = +1

Query: 61  CLAPINLNQ-QGVYTIVIGSHISTIYHYGFANLMM-----RRYVDATKEFNKILLYIIKY 222
           C +P   N+ +   T++ G    TI +    NL +     ++  +  KE NK L  +I++
Sbjct: 303 CCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQH 362

Query: 223 KQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDE------NVSTQLKEKYNDKMT 384
            +      +  + + ++EQ+ A     L  C    +ID        +ST+ KEKY+++++
Sbjct: 363 LEMELNRWRNGEAVPEDEQISAKDQKNLEPCDNTPIIDNIAPVVAGISTEEKEKYDEEIS 422

Query: 385 KMQRFDDE 408
            + R  D+
Sbjct: 423 SLYRQLDD 430

>RPOC_PLAFA (P21422) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6)|
          Length = 575

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +1

Query: 43  YHTGLKCLAPINLNQQGVYTIVIGSHISTIYHYGFANLMMRRYVDATKEFNKILLYIIKY 222
           Y TG   +A + LN+   Y   +       Y Y F+N+  ++Y    K F+KI LY  KY
Sbjct: 120 YLTGPLKVASLLLNKNVFYLKFL-----IYYKYFFSNIKYKQYFYYNKLFSKINLYKKKY 174

Query: 223 KQYHQKSPQYDQILKKNEQMYAL 291
           K   Q    ++ + KK + +  L
Sbjct: 175 KNIIQYLFSHNILYKKLQNINLL 197

>SYI_BUCAI (P57249) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 940

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 22/102 (21%), Positives = 42/102 (41%)
 Frame = +1

Query: 136  HYGFANLMMRRYVDATKEFNKILLYIIKYKQYHQKSPQYDQILKKNEQMYALLAICLSLC 315
            +Y F  ++ R     + E     L IIK +QY  K    ++   +    Y + ++   + 
Sbjct: 707  NYNFHAVIQRLMYFCSIEMGSFYLDIIKDRQYTLKKHSQERRSSQTAIYYIINSLVRWIA 766

Query: 316  PQNKLIDENVSTQLKEKYNDKMTKMQRFDDEAYAAYDELFSY 441
            P      + + + L E  +  +   + FD   Y   D+LF+Y
Sbjct: 767  PILSFTADEIWSYLPENNSQYVFMEEWFDKLFYLDQDDLFNY 808

>VP2_ROTBU (P17462) RNA-binding protein VP2 (Major internal core protein)|
          Length = 881

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 178 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 267
           +TKE +K LL ++K K+ HQK  QY+ + K
Sbjct: 64  STKEESKQLLEVLKTKEEHQKEIQYEILQK 93

>VP2_ROTBR (P12472) RNA-binding protein VP2 (Major internal core protein)|
          Length = 880

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 178 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 267
           +TKE +K LL ++K K+ HQK  QY+ + K
Sbjct: 64  STKEESKQLLEVLKTKEEHQKEIQYEILQK 93

>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)|
            (AH antigen)
          Length = 3210

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 229  YHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTKM 390
            Y   S +Y    +KN ++  LL  C SLC   K   E +     +++ + +TK+
Sbjct: 1036 YEDLSQKYKAAQEKNSKLECLLNECTSLCENRKNELEQLKEAFAKEHQEFLTKL 1089

>HGLB_SCHMA (P09841) Hemoglobinase precursor (EC 3.4.22.34) (Antigen SM32)|
          Length = 429

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 166 RYVDATKEFNKILLYIIKYKQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLI-DEN 342
           +Y+ + K ++K+++YI    + ++    + QIL  N  +YA  A   + C  +    D  
Sbjct: 174 KYLHSHKRYSKLVIYI----EANESGSMFQQILPSNLSIYATTAANSTECSYSTFCGDPT 229

Query: 343 VSTQLKEKYN 372
           ++T L + Y+
Sbjct: 230 ITTCLADLYS 239

>SRB8_YEAST (P25648) Suppressor of RNA polymerase B SRB8|
          Length = 1427

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 463  PSPPVLDQPLTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSY 585
            P+ P +D     +++ ++ L+LKLFLYE+     LS ++S+
Sbjct: 1252 PTSPFIDSICKLFDKISFNLRLKLFLYEI-----LSSLKSF 1287

>FAEHP_METAC (Q8THA9) Fae/hps bifunctional enzyme [Includes:|
           Formaldehyde-activating enzyme (EC 4.3.-.-) (Fae);
           3-hexulose-6-phosphate synthase (EC 4.1.2.-) (HPS)
           (D-arabino-3-hexulose-6-phosphate formaldehyde lyase)]
          Length = 392

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
 Frame = +1

Query: 133 YHYGFANLMMRRYVDATKEFNKIL-------LYIIKYKQYHQKSPQYDQILKKNEQMYAL 291
           Y+YG   L ++R ++   + NK+L         I+ +K      P Y Q+   N  +  +
Sbjct: 128 YNYGATKLAIKRALEGFPDINKVLEESNKSTHAIMGFKVTRLWDPPYLQVAFDNPNLEFV 187

Query: 292 LAICLSLCPQNKLIDENVSTQLKEKYN-DKMTKMQRFDDEAYAAYD 426
           L+  +S  P +  +     T L ++Y  D ++K+++   +A+   D
Sbjct: 188 LS-AISQIPNSDHVIIEAGTPLIKRYGVDVISKIRQVRPDAFIVAD 232

>SYL_MYCPU (Q98RB6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 807

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +1

Query: 295 AICLSLCPQNKLIDENVSTQLKEKYNDKMTKMQRFDDEAYAAYDE 429
           A  L++ P++ L+++ V+++ KEK  D + + ++ DD   A  +E
Sbjct: 257 ATFLTISPEHPLVEKIVTSENKEKVKDFIKEFEKLDDRQKADKNE 301

>COAT_CERV (P05399) Probable coat protein|
          Length = 494

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 223 KQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTKMQRFD 402
           KQY  K P   +   K  +  A  A   SL   +KL++E ++   +   + K  K++RF+
Sbjct: 290 KQYLAKIPIVGEKASKRFEEEASAATSYSLGFAHKLVNEELAKICE--LSKKQKKLKRFN 347

Query: 403 DEAYAAYDELFSYAC 447
               + +++ + Y C
Sbjct: 348 KNCCSTFEKPYEYGC 362

>YM58_YEAST (Q03695) Hypothetical 35.0 kDa protein in PFK2-HFA1 intergenic|
           region
          Length = 313

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = +1

Query: 64  LAPINLNQQGVYTIVIGSHISTIYH-YGFANLMMRRYVDATKEFNKILLYI------IKY 222
           L+P N N Q +      SHI +++H      +  + +V  TK+  +I  Y       +KY
Sbjct: 120 LSPSNNNHQFIARRFSDSHIPSLHHRQQQQKVTTKNFVQPTKDIQRIASYAADSDQRVKY 179

Query: 223 -KQYHQKSP 246
              YHQ +P
Sbjct: 180 LPNYHQSAP 188

>FOR3_SCHPO (O94532) Formin-3|
          Length = 1461

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 163 RRYVDATKEFNKILLYIIKYKQ-YHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDE 339
           R  +  T + N    Y++ Y   YHQK+   D++L + EQ+  +  +   + P+      
Sbjct: 57  REDLSLTSDDNNDPEYVMCYNTVYHQKTKINDKLLSETEQLRKIYPLESRVFPK------ 110

Query: 340 NVSTQLKEKYNDKMTKMQRFDDEA 411
              T +KE  N++  +   +DD+A
Sbjct: 111 --PTIVKEITNERTKRYTFYDDDA 132

>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1260

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 217 KYKQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTKMQR 396
           K +Q   K+ + ++  KKN QMY  LA C++     +   +    Q+K    +     +R
Sbjct: 43  KEEQERMKAEREEEDHKKNLQMYMFLARCIAYPFNGQQTGDMARRQMKVNKQELARIRER 102

Query: 397 F----DDEAYAAYDELFSYACPKF 456
           F      E   A DE F+ A   +
Sbjct: 103 FTLFLKGETNIAADEAFTKAIQSY 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,790,813
Number of Sequences: 219361
Number of extensions: 1832780
Number of successful extensions: 5182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5175
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)