ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags22f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 507 e-140
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 204 2e-49
3gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 204 2e-49
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
5ref|NM_104515.2| Arabidopsis thaliana translation release factor... 56 1e-04
6gb|AY090252.1| Arabidopsis thaliana At1g56350/F14G9_3 mRNA sequence 56 1e-04
7emb|BX816417.1|CNS0ABWP Arabidopsis thaliana Full-length cDNA Co... 46 0.11
8gb|AE008601.1| Rickettsia conorii str. Malish 7, section 33 of 1... 44 0.45
9gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map ... 42 1.8
10gb|AC125539.4| Mus musculus BAC clone RP23-150M18 from 15, compl... 42 1.8
11emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, ... 42 1.8
12gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Ca... 42 1.8
13gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell... 42 1.8
14gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from S... 42 1.8
15dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, ... 42 1.8
16emb|AL953907.19| Zebrafish DNA sequence from clone CH211-229I14,... 42 1.8
17dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.8
18gb|AC119177.11| Mus musculus chromosome 15, clone RP24-559L16, c... 42 1.8
19dbj|AP000240.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 1.8
20dbj|AP000200.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 42 1.8
21dbj|AP000096.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 42 1.8
22gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
23gb|AC126431.3| Mus musculus BAC clone RP24-407P8 from chromosome... 40 7.0
24gb|AC163650.2| Mus musculus BAC clone RP24-383A20 from chromosom... 40 7.0
25emb|AL358972.13| Human DNA sequence from clone RP11-347L18 on ch... 40 7.0
26gb|DQ445258.1| Chlamydomonas reinhardtii 2-succinyl-6-hydroxy-2,... 40 7.0
27emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 7.0
28gb|AC114877.2| Homo sapiens chromosome 3 clone CTD-2270K17, comp... 40 7.0
29gb|AC121336.3| Homo sapiens 12 BAC RP11-134P3 (Roswell Park Canc... 40 7.0
30gb|AC099754.2| Homo sapiens chromosome 3 clone RP11-592A5, compl... 40 7.0
31gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, comp... 40 7.0
32gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 7.0
33dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
34gb|AC175498.2| Pan troglodytes BAC clone CH251-572B5 from chromo... 40 7.0
35gb|AC007533.2|AC007533 Homo sapiens chromosome 16 clone RPCI-11_... 40 7.0
36gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 7.0
37gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
38gb|CP000218.1| Drosophila melanogaster genomic scaffold 21100002... 40 7.0
39emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in... 40 7.0
40gb|AC132409.3| Mus musculus BAC clone RP23-346B1 from 6, complet... 40 7.0
41emb|AL929405.8| Mouse DNA sequence from clone RP24-323B22 on chr... 40 7.0 
>dbj|AK073807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070I07, full
            insert sequence
          Length = 1870

 Score =  507 bits (256), Expect = e-140
 Identities = 448/512 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    ttcgagcaacagttgatggagcacatcgatatgttgaggcttgcacgtgacgagggtgac 60
            ||||||||  |||||||||||||||| || ||||||||||||||| | || ||||  || 
Sbjct: 533  ttcgagcaggagttgatggagcacattgacatgttgaggcttgcaagagaagaggacgat 592

                                                                        
Query: 61   aatgaacttgagacggaatccatgagagcattggccgatatgagaagagaagcaaaggag 120
            |||||||||||||||||| ||||||| ||||| ||||| |||||||||   |||||||||
Sbjct: 593  aatgaacttgagacggaaaccatgagggcattagccgaaatgagaagaagtgcaaaggag 652

                                                                        
Query: 121  aaagaactcaacgcattgctttctggagataatgacccttacccttgcttcattgaggtc 180
            |||||||| || |||||||||||||||||||||||| ||| | |||||||||||||||| 
Sbjct: 653  aaagaactgaatgcattgctttctggagataatgactcttgctcttgcttcattgaggtt 712

                                                                        
Query: 181  caagcaggagccggtggcgttgagagcatggattgggctgccatggttatgaacatgtac 240
            || |||||||| || ||   ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 713  caggcaggagctggaggtactgagagcatggattgggctgcaatggttatgaacatgtac 772

                                                                        
Query: 241  aaatcatgggctcagcgacggggatacagagtcactgtaatagaagaaatgcctggtgaa 300
            |  |||||||| || ||||| ||||||| ||||| | | |||||||||||||||||||||
Sbjct: 773  agctcatgggcccaacgacgaggatacacagtcagtattatagaagaaatgcctggtgaa 832

                                                                        
Query: 301  ctagcaggaatcaagagggctactatcaaagttgacggtgagtatgcatttggatatgcc 360
             ||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| 
Sbjct: 833  atagcaggaatcaagagggcaactatcaaagtggatggtgaatatgcatttggatatgct 892

                                                                        
Query: 361  aaatctgaaataggagttcacagattagtgcggatttctccatttgacagtggaaagcgg 420
            ||| | ||| |||| ||||| ||||| || ||||||||||||||||||||||||||| ||
Sbjct: 893  aaagccgaagtaggtgttcatagattggtacggatttctccatttgacagtggaaagagg 952

                                                                        
Query: 421  cggcacacttcctttgctgctgtcgctgtaatacctattcttggtgagtcctctagccga 480
            ||||||||||||||||||||||| |||||  ||||||||||||||||    |||| ||||
Sbjct: 953  cggcacacttcctttgctgctgtggctgttgtacctattcttggtgatggttctacccga 1012

                                            
Query: 481  taccagataaatgaatcggatcttcggataga 512
            ||||||||||| || || ||||||||||||||
Sbjct: 1013 taccagataaaagattcagatcttcggataga 1044
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  204 bits (103), Expect = 2e-49
 Identities = 175/199 (87%)
 Strand = Plus / Plus

                                                                            
Query: 314      agagggctactatcaaagttgacggtgagtatgcatttggatatgccaaatctgaaatag 373
                ||||||| ||||||||||| || ||||| ||||||||||||||||| ||| | ||| |||
Sbjct: 10824079 agagggcaactatcaaagtggatggtgaatatgcatttggatatgctaaagccgaagtag 10824138

                                                                            
Query: 374      gagttcacagattagtgcggatttctccatttgacagtggaaagcggcggcacacttcct 433
                | ||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10824139 gtgttcatagattggtacggatttctccatttgacagtggaaagaggcggcacacttcct 10824198

                                                                            
Query: 434      ttgctgctgtcgctgtaatacctattcttggtgagtcctctagccgataccagataaatg 493
                |||||||||| |||||  ||||||||||||||||    |||| ||||||||||||||| |
Sbjct: 10824199 ttgctgctgtggctgttgtacctattcttggtgatggttctacccgataccagataaaag 10824258

                                   
Query: 494      aatcggatcttcggataga 512
                | || ||||||||||||||
Sbjct: 10824259 attcagatcttcggataga 10824277



 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Plus

                                                                            
Query: 201      tgagagcatggattgggctgccatggttatgaacatgtacaaatcatgggctcagcgacg 260
                ||||||||||||||||||||| |||||||||||||||||||  |||||||| || |||||
Sbjct: 10823752 tgagagcatggattgggctgcaatggttatgaacatgtacagctcatgggcccaacgacg 10823811

                                                                       
Query: 261      gggatacagagtcactgtaatagaagaaatgcctggtgaactagcaggaatcaag 315
                 ||||||| ||||| | | ||||||||||||||||||||| ||||||||||||||
Sbjct: 10823812 aggatacacagtcagtattatagaagaaatgcctggtgaaatagcaggaatcaag 10823866



 Score =  113 bits (57), Expect = 6e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                            
Query: 75       ggaatccatgagagcattggccgatatgagaagagaagcaaaggagaaagaactcaacgc 134
                |||| ||||||| ||||| ||||| |||||||||   ||||||||||||||||| || ||
Sbjct: 10823529 ggaaaccatgagggcattagccgaaatgagaagaagtgcaaaggagaaagaactgaatgc 10823588

                                                             
Query: 135      attgctttctggagataatgacccttacccttgcttcattgaggt 179
                |||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 10823589 attgctttctggagataatgactcttgctcttgcttcattgaggt 10823633



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttcgagcaacagttgatggagcacatcgatatgttgaggcttgcacgtgacgagggtgac 60
                ||||||||  |||||||||||||||| || ||||||||||||||| | || ||||  || 
Sbjct: 10823357 ttcgagcaggagttgatggagcacattgacatgttgaggcttgcaagagaagaggacgat 10823416

                                
Query: 61       aatgaacttgagacgg 76
                ||||||||||||||||
Sbjct: 10823417 aatgaacttgagacgg 10823432
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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score =  204 bits (103), Expect = 2e-49
 Identities = 175/199 (87%)
 Strand = Plus / Minus

                                                                         
Query: 314   agagggctactatcaaagttgacggtgagtatgcatttggatatgccaaatctgaaatag 373
             ||||||| ||||||||||| || ||||| ||||||||||||||||| ||| | ||| |||
Sbjct: 30808 agagggcaactatcaaagtggatggtgaatatgcatttggatatgctaaagccgaagtag 30749

                                                                         
Query: 374   gagttcacagattagtgcggatttctccatttgacagtggaaagcggcggcacacttcct 433
             | ||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 30748 gtgttcatagattggtacggatttctccatttgacagtggaaagaggcggcacacttcct 30689

                                                                         
Query: 434   ttgctgctgtcgctgtaatacctattcttggtgagtcctctagccgataccagataaatg 493
             |||||||||| |||||  ||||||||||||||||    |||| ||||||||||||||| |
Sbjct: 30688 ttgctgctgtggctgttgtacctattcttggtgatggttctacccgataccagataaaag 30629

                                
Query: 494   aatcggatcttcggataga 512
             | || ||||||||||||||
Sbjct: 30628 attcagatcttcggataga 30610



 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Minus

                                                                         
Query: 201   tgagagcatggattgggctgccatggttatgaacatgtacaaatcatgggctcagcgacg 260
             ||||||||||||||||||||| |||||||||||||||||||  |||||||| || |||||
Sbjct: 31135 tgagagcatggattgggctgcaatggttatgaacatgtacagctcatgggcccaacgacg 31076

                                                                    
Query: 261   gggatacagagtcactgtaatagaagaaatgcctggtgaactagcaggaatcaag 315
              ||||||| ||||| | | ||||||||||||||||||||| ||||||||||||||
Sbjct: 31075 aggatacacagtcagtattatagaagaaatgcctggtgaaatagcaggaatcaag 31021



 Score =  113 bits (57), Expect = 6e-22
 Identities = 93/105 (88%)
 Strand = Plus / Minus

                                                                         
Query: 75    ggaatccatgagagcattggccgatatgagaagagaagcaaaggagaaagaactcaacgc 134
             |||| ||||||| ||||| ||||| |||||||||   ||||||||||||||||| || ||
Sbjct: 31358 ggaaaccatgagggcattagccgaaatgagaagaagtgcaaaggagaaagaactgaatgc 31299

                                                          
Query: 135   attgctttctggagataatgacccttacccttgcttcattgaggt 179
             |||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 31298 attgctttctggagataatgactcttgctcttgcttcattgaggt 31254



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     ttcgagcaacagttgatggagcacatcgatatgttgaggcttgcacgtgacgagggtgac 60
             ||||||||  |||||||||||||||| || ||||||||||||||| | || ||||  || 
Sbjct: 31530 ttcgagcaggagttgatggagcacattgacatgttgaggcttgcaagagaagaggacgat 31471

                             
Query: 61    aatgaacttgagacgg 76
             ||||||||||||||||
Sbjct: 31470 aatgaacttgagacgg 31455
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  204 bits (103), Expect = 2e-49
 Identities = 175/199 (87%)
 Strand = Plus / Plus

                                                                            
Query: 314      agagggctactatcaaagttgacggtgagtatgcatttggatatgccaaatctgaaatag 373
                ||||||| ||||||||||| || ||||| ||||||||||||||||| ||| | ||| |||
Sbjct: 10822180 agagggcaactatcaaagtggatggtgaatatgcatttggatatgctaaagccgaagtag 10822239

                                                                            
Query: 374      gagttcacagattagtgcggatttctccatttgacagtggaaagcggcggcacacttcct 433
                | ||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10822240 gtgttcatagattggtacggatttctccatttgacagtggaaagaggcggcacacttcct 10822299

                                                                            
Query: 434      ttgctgctgtcgctgtaatacctattcttggtgagtcctctagccgataccagataaatg 493
                |||||||||| |||||  ||||||||||||||||    |||| ||||||||||||||| |
Sbjct: 10822300 ttgctgctgtggctgttgtacctattcttggtgatggttctacccgataccagataaaag 10822359

                                   
Query: 494      aatcggatcttcggataga 512
                | || ||||||||||||||
Sbjct: 10822360 attcagatcttcggataga 10822378



 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Plus

                                                                            
Query: 201      tgagagcatggattgggctgccatggttatgaacatgtacaaatcatgggctcagcgacg 260
                ||||||||||||||||||||| |||||||||||||||||||  |||||||| || |||||
Sbjct: 10821853 tgagagcatggattgggctgcaatggttatgaacatgtacagctcatgggcccaacgacg 10821912

                                                                       
Query: 261      gggatacagagtcactgtaatagaagaaatgcctggtgaactagcaggaatcaag 315
                 ||||||| ||||| | | ||||||||||||||||||||| ||||||||||||||
Sbjct: 10821913 aggatacacagtcagtattatagaagaaatgcctggtgaaatagcaggaatcaag 10821967



 Score =  113 bits (57), Expect = 6e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                            
Query: 75       ggaatccatgagagcattggccgatatgagaagagaagcaaaggagaaagaactcaacgc 134
                |||| ||||||| ||||| ||||| |||||||||   ||||||||||||||||| || ||
Sbjct: 10821630 ggaaaccatgagggcattagccgaaatgagaagaagtgcaaaggagaaagaactgaatgc 10821689

                                                             
Query: 135      attgctttctggagataatgacccttacccttgcttcattgaggt 179
                |||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 10821690 attgctttctggagataatgactcttgctcttgcttcattgaggt 10821734



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttcgagcaacagttgatggagcacatcgatatgttgaggcttgcacgtgacgagggtgac 60
                ||||||||  |||||||||||||||| || ||||||||||||||| | || ||||  || 
Sbjct: 10821458 ttcgagcaggagttgatggagcacattgacatgttgaggcttgcaagagaagaggacgat 10821517

                                
Query: 61       aatgaacttgagacgg 76
                ||||||||||||||||
Sbjct: 10821518 aatgaacttgagacgg 10821533
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>ref|NM_104515.2| Arabidopsis thaliana translation release factor/ translation release
            factor, codon specific AT1G56350 mRNA, complete cds
          Length = 1511

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 109/136 (80%)
 Strand = Plus / Plus

                                                                        
Query: 302  tagcaggaatcaagagggctactatcaaagttgacggtgagtatgcatttggatatgcca 361
            |||||||||||||| | ||||| ||||||||  ||||||| || ||||  ||||| ||||
Sbjct: 904  tagcaggaatcaagcgtgctacaatcaaagtgaacggtgaatacgcatacggatacgcca 963

                                                                        
Query: 362  aatctgaaataggagttcacagattagtgcggatttctccatttgacagtggaaagcggc 421
            || | ||| | ||||| || ||  | ||||| || || || |||||||||||||| ||| 
Sbjct: 964  aagcagaagttggagtacataggctggtgcgtatatccccgtttgacagtggaaaacgga 1023

                            
Query: 422  ggcacacttcctttgc 437
            | |||||||| |||||
Sbjct: 1024 gacacacttcgtttgc 1039
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>gb|AY090252.1| Arabidopsis thaliana At1g56350/F14G9_3 mRNA sequence
          Length = 1615

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 109/136 (80%)
 Strand = Plus / Plus

                                                                        
Query: 302  tagcaggaatcaagagggctactatcaaagttgacggtgagtatgcatttggatatgcca 361
            |||||||||||||| | ||||| ||||||||  ||||||| || ||||  ||||| ||||
Sbjct: 938  tagcaggaatcaagcgtgctacaatcaaagtgaacggtgaatacgcatacggatacgcca 997

                                                                        
Query: 362  aatctgaaataggagttcacagattagtgcggatttctccatttgacagtggaaagcggc 421
            || | ||| | ||||| || ||  | ||||| || || || |||||||||||||| ||| 
Sbjct: 998  aagcagaagttggagtacataggctggtgcgtatatccccgtttgacagtggaaaacgga 1057

                            
Query: 422  ggcacacttcctttgc 437
            | |||||||| |||||
Sbjct: 1058 gacacacttcgtttgc 1073
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>emb|BX816417.1|CNS0ABWP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH47ZB11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1639

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 92/115 (80%)
 Strand = Plus / Plus

                                                                       
Query: 302 tagcaggaatcaagagggctactatcaaagttgacggtgagtatgcatttggatatgcca 361
           |||||||||||||| | ||||| ||||||||  ||||||| || ||||  ||||| ||||
Sbjct: 883 tagcaggaatcaagcgtgctacaatcaaagtgaacggtgaatacgcatacggatacgcca 942

                                                                  
Query: 362 aatctgaaataggagttcacagattagtgcggatttctccatttgacagtggaaa 416
           || | ||| | ||||| || ||  | ||||| || || || ||||||||||||||
Sbjct: 943 aagcagaagttggagtacataggctggtgcgtatatccccgtttgacagtggaaa 997
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>gb|AE008601.1| Rickettsia conorii str. Malish 7, section 33 of 114 of the complete
            genome
          Length = 10029

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 376  gttcacagattagtgcggatttctcc 401
            ||||||||||||||||| ||||||||
Sbjct: 7210 gttcacagattagtgcgtatttctcc 7185
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>gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map q21.3-22.11, complete
             sequence
          Length = 210352

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   gaagagaagcaaaggagaaag 124
             |||||||||||||||||||||
Sbjct: 82041 gaagagaagcaaaggagaaag 82021
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>gb|AC125539.4| Mus musculus BAC clone RP23-150M18 from 15, complete sequence
          Length = 204453

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    catgtacaaatcatgggctca 254
              |||||||||||||||||||||
Sbjct: 163630 catgtacaaatcatgggctca 163650
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>emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, complete sequence
          Length = 223119

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 102    gagaagagaagcaaaggagaaagaa 126
              ||||||||||||| |||||||||||
Sbjct: 167909 gagaagagaagcagaggagaaagaa 167885
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>gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 149546

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 278   taatagaagaaatgcctggtgaact 302
             |||||||||||| ||||||||||||
Sbjct: 35979 taatagaagaaaagcctggtgaact 35955
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>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168227

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 278   taatagaagaaatgcctggtgaact 302
             |||||||||||| ||||||||||||
Sbjct: 99060 taatagaagaaaagcctggtgaact 99084
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>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence
          Length = 196817

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 278   taatagaagaaatgcctggtgaact 302
             |||||||||||| ||||||||||||
Sbjct: 83250 taatagaagaaaagcctggtgaact 83226
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>dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, map 22, complete
              sequences
          Length = 220133

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    gaagagaagcaaaggagaaag 124
              |||||||||||||||||||||
Sbjct: 145356 gaagagaagcaaaggagaaag 145336
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>emb|AL953907.19| Zebrafish DNA sequence from clone CH211-229I14, complete sequence
          Length = 151514

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 102   gagaagagaagcaaaggagaaagaa 126
             ||||||||||||| |||||||||||
Sbjct: 28894 gagaagagaagcagaggagaaagaa 28870
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>dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, section 49/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   gaagagaagcaaaggagaaag 124
             |||||||||||||||||||||
Sbjct: 89032 gaagagaagcaaaggagaaag 89012
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>gb|AC119177.11| Mus musculus chromosome 15, clone RP24-559L16, complete sequence
          Length = 246547

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   catgtacaaatcatgggctca 254
             |||||||||||||||||||||
Sbjct: 45472 catgtacaaatcatgggctca 45492
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>dbj|AP000240.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:B175P11, complete sequence
          Length = 176099

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   gaagagaagcaaaggagaaag 124
             |||||||||||||||||||||
Sbjct: 79389 gaagagaagcaaaggagaaag 79369
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>dbj|AP000200.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B355D16-T1073, segment 6/8, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   gaagagaagcaaaggagaaag 124
             |||||||||||||||||||||
Sbjct: 88959 gaagagaagcaaaggagaaag 88979
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>dbj|AP000096.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             B335D16-P10G11 region, segment 6/7
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   gaagagaagcaaaggagaaag 124
             |||||||||||||||||||||
Sbjct: 88959 gaagagaagcaaaggagaaag 88979
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>gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0037B06 map near 50283S, complete sequence
          Length = 149398

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   gagaagagaagcaaaggagaaaga 125
             ||||||||||| ||||||||||||
Sbjct: 58964 gagaagagaagaaaaggagaaaga 58941
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>gb|AC126431.3| Mus musculus BAC clone RP24-407P8 from chromosome 6, complete sequence
          Length = 144924

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   aagagaagcaaaggagaaagaact 128
             ||||| ||||||||||||||||||
Sbjct: 14454 aagagtagcaaaggagaaagaact 14477
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>gb|AC163650.2| Mus musculus BAC clone RP24-383A20 from chromosome 13, complete
             sequence
          Length = 210177

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    acaatgaacttgagacggaa 78
             ||||||||||||||||||||
Sbjct: 64691 acaatgaacttgagacggaa 64710
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>emb|AL358972.13| Human DNA sequence from clone RP11-347L18 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 172606

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   gcacacttcctttgctgctg 442
             ||||||||||||||||||||
Sbjct: 23356 gcacacttcctttgctgctg 23375
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>gb|DQ445258.1| Chlamydomonas reinhardtii
            2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
            synthase (menD) mRNA, complete cds
          Length = 2658

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  catggattgggctgccatgg 226
            ||||||||||||||||||||
Sbjct: 1227 catggattgggctgccatgg 1246
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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
              complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    ttgctttctggagataatga 155
              ||||||||||||||||||||
Sbjct: 119184 ttgctttctggagataatga 119165
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>gb|AC114877.2| Homo sapiens chromosome 3 clone CTD-2270K17, complete sequence
          Length = 179246

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   aagagaagcaaaggagaaag 124
             ||||||||||||||||||||
Sbjct: 96168 aagagaagcaaaggagaaag 96149
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>gb|AC121336.3| Homo sapiens 12 BAC RP11-134P3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171437

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    agaagagaagcaaaggagaaagaa 126
              |||| |||||||||||||||||||
Sbjct: 135732 agaacagaagcaaaggagaaagaa 135755
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>gb|AC099754.2| Homo sapiens chromosome 3 clone RP11-592A5, complete sequence
          Length = 197310

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aagagaagcaaaggagaaag 124
             ||||||||||||||||||||
Sbjct: 19110 aagagaagcaaaggagaaag 19129
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>gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, complete sequence
          Length = 209320

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   gagaagcaaaggagaaagaa 126
             ||||||||||||||||||||
Sbjct: 69012 gagaagcaaaggagaaagaa 68993
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 373     ggagttcacagattagtgcggatttctccatttgac 408
               |||||||||||| | || ||||||||||| ||||||
Sbjct: 3735534 ggagttcacagactcgttcggatttctccctttgac 3735569
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 102      gagaagagaagcaaaggagaaaga 125
                ||||||||||| ||||||||||||
Sbjct: 14677320 gagaagagaagaaaaggagaaaga 14677343
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>gb|AC175498.2| Pan troglodytes BAC clone CH251-572B5 from chromosome unknown, complete
             sequence
          Length = 165877

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   agaagagaagcaaaggagaaagaa 126
             |||| |||||||||||||||||||
Sbjct: 28671 agaacagaagcaaaggagaaagaa 28648
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>gb|AC007533.2|AC007533 Homo sapiens chromosome 16 clone RPCI-11_474B12, complete sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   atgagaagagaagcaaagga 119
             ||||||||||||||||||||
Sbjct: 69595 atgagaagagaagcaaagga 69576
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 373    ggagttcacagattagtgcggatttctccatttgac 408
              |||||||||||| | || ||||||||||| ||||||
Sbjct: 542349 ggagttcacagactcgttcggatttctccctttgac 542314
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 102      gagaagagaagcaaaggagaaaga 125
                ||||||||||| ||||||||||||
Sbjct: 14757753 gagaagagaagaaaaggagaaaga 14757776
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>gb|CP000218.1| Drosophila melanogaster genomic scaffold 211000022280780
          Length = 166742

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    tgtaatacctattcttggtg 466
              ||||||||||||||||||||
Sbjct: 111880 tgtaatacctattcttggtg 111899
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>emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in linkage group 21,
            complete sequence
          Length = 136791

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  ttgctttctggagataatga 155
            ||||||||||||||||||||
Sbjct: 6157 ttgctttctggagataatga 6176
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>gb|AC132409.3| Mus musculus BAC clone RP23-346B1 from 6, complete sequence
          Length = 207528

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 105  aagagaagcaaaggagaaagaact 128
            ||||| ||||||||||||||||||
Sbjct: 1206 aagagtagcaaaggagaaagaact 1183
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>emb|AL929405.8| Mouse DNA sequence from clone RP24-323B22 on chromosome 4, complete
             sequence
          Length = 118016

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   tggagataatgacccttacc 163
             ||||||||||||||||||||
Sbjct: 76831 tggagataatgacccttacc 76812


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,396,323
Number of Sequences: 3902068
Number of extensions: 4396323
Number of successful extensions: 82816
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82593
Number of HSP's gapped (non-prelim): 216
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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