ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags22e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY130238.1| Phacus pyrum large subunit ribosomal RNA gene, pa... 44 0.19
2gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 2.9
3emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9... 40 2.9

>gb|AY130238.1| Phacus pyrum large subunit ribosomal RNA gene, partial sequence
          Length = 1537

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 161  ggtctcggatcacacaggtgca 182
            ||||||||||||||||||||||
Sbjct: 1300 ggtctcggatcacacaggtgca 1279



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    ctcgaccaggtctcggatca 172
              ||||||||||||||||||||
Sbjct: 227465 ctcgaccaggtctcggatca 227484



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>emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9 on chromosome 3,
             complete sequence
          Length = 151325

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aggtgcacatccagtgacca 195
             ||||||||||||||||||||
Sbjct: 50415 aggtgcacatccagtgacca 50396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,106,854
Number of Sequences: 3902068
Number of extensions: 1106854
Number of successful extensions: 20189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20173
Number of HSP's gapped (non-prelim): 16
length of query: 230
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 208
effective length of database: 17,147,199,772
effective search space: 3566617552576
effective search space used: 3566617552576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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