ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags21p13 |
|---|---|
| Clone Library Name | barley_pub |
>RL21_ARATH (Q43291) 60S ribosomal protein L21| Length = 164 Score = 137 bits (346), Expect = 9e-33 Identities = 67/81 (82%), Positives = 70/81 (86%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEG 218 II+KRIHVRVEHVQ SRC EEF RK ND+LKA AKA GE ISTKRQP GPKPGFMVEG Sbjct: 84 IIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEG 143 Query: 219 TTIETVTPIPYDVVNDLKGGY 281 T+ETVTPIPYDVVNDLKGGY Sbjct: 144 MTLETVTPIPYDVVNDLKGGY 164
>RL21B_YEAST (Q12672) 60S ribosomal protein L21-B| Length = 160 Score = 69.7 bits (169), Expect = 3e-12 Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 2/73 (2%) Frame = +3 Query: 42 IKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMV--E 215 ++KR+++RVEH++ S+C +EFL+R N +AEAKA+G + KRQPA P+ +V E Sbjct: 85 LEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTE 144 Query: 216 GTTIETVTPIPYD 254 G +T+ P+PY+ Sbjct: 145 GNVPQTLAPVPYE 157
>RL21A_YEAST (Q02753) 60S ribosomal protein L21-A| Length = 160 Score = 69.7 bits (169), Expect = 3e-12 Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 2/73 (2%) Frame = +3 Query: 42 IKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMV--E 215 ++KR+++RVEH++ S+C +EFL+R N +AEAKA+G + KRQPA P+ +V E Sbjct: 85 LEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTE 144 Query: 216 GTTIETVTPIPYD 254 G +T+ P+PY+ Sbjct: 145 GNVPQTLAPVPYE 157
>RL21_CYAPA (O82574) 60S ribosomal protein L21| Length = 161 Score = 65.9 bits (159), Expect = 4e-11 Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 3/75 (4%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAK-ARGEVISTKRQPAGPKPGFMV- 212 IIKKRIHVR++HV+ S C + FL+R NDK+K +A A+ V STKR P PK G ++ Sbjct: 84 IIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIK 143 Query: 213 -EGTTIETVTPIPYD 254 +G ET IPY+ Sbjct: 144 SKGQVPETCHAIPYE 158
>RL21_HUMAN (P46778) 60S ribosomal protein L21| Length = 159 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMV-- 212 I+ KRI+VR+EH++ S+ + FL+R ND+ K EAK +G + KRQPA P+ V Sbjct: 83 ILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRT 142 Query: 213 EGTTIETVTPIPYD 254 G E + PIPY+ Sbjct: 143 NGKEPELLEPIPYE 156
>RL21_CHILA (Q6QN05) 60S ribosomal protein L21| Length = 159 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMV-- 212 I+ KRI+VR+EH++ S+ + FL+R ND+ K EAK +G + KRQPA P+ V Sbjct: 83 ILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRT 142 Query: 213 EGTTIETVTPIPYD 254 G E + PIPY+ Sbjct: 143 NGKEPELLEPIPYE 156
>RL21B_SCHPO (O42706) 60S ribosomal protein L21-B| Length = 160 Score = 62.8 bits (151), Expect = 4e-10 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Frame = +3 Query: 42 IKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEGT 221 ++KR++VR+EHV+ S+C ++FL R N+ + EAKA+G+ + +RQPA P V Sbjct: 85 MEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTE 144 Query: 222 TIETVT--PIPYD 254 E VT P+ YD Sbjct: 145 NNEPVTLHPVAYD 157
>RL21A_SCHPO (Q9UUC1) 60S ribosomal protein L21-A| Length = 160 Score = 62.8 bits (151), Expect = 4e-10 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Frame = +3 Query: 42 IKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEGT 221 ++KR++VR+EHV+ S+C ++FL R N+ + EAKA+G+ + +RQPA P V Sbjct: 85 MEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTE 144 Query: 222 TIETVT--PIPYD 254 E VT P+ YD Sbjct: 145 NNEPVTLHPVAYD 157
>RL21_RAT (P20280) 60S ribosomal protein L21| Length = 159 Score = 59.3 bits (142), Expect = 4e-09 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMV-- 212 I+ KRI+VR+EH++ S+ + FL+R ND+ K EAK +G + QPA P+ V Sbjct: 83 ILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLNGQPAPPREAHFVRT 142 Query: 213 EGTTIETVTPIPYD 254 G E + PIPY+ Sbjct: 143 NGKEPELLEPIPYE 156
>RL21_MOUSE (O09167) 60S ribosomal protein L21| Length = 159 Score = 58.9 bits (141), Expect = 5e-09 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMV-- 212 I+ KRI+VR+EH++ S+ + FL+R ND+ K EAK +G + KR A P+ V Sbjct: 83 ILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRT 142 Query: 213 EGTTIETVTPIPYD 254 G E + PIPY+ Sbjct: 143 NGKEPELLEPIPYE 156
>RL21_PYUST (P49667) 60S ribosomal protein L21 (Fragment)| Length = 155 Score = 57.0 bits (136), Expect = 2e-08 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEG 218 II KRI+VR+EH++ S+ F+QR N++ + EA+ + ++ KRQP P+ G V Sbjct: 82 IIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREKKIRVNLKRQPQQPRTGHFVRS 141 Query: 219 TT-IETVTPIPYD 254 + E V PIPY+ Sbjct: 142 SAEPELVEPIPYE 154
>RL21_CAEEL (P34334) 60S ribosomal protein L21| Length = 160 Score = 55.8 bits (133), Expect = 4e-08 Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGE-VISTKRQPAGPKPGFMV- 212 I+ KRI++R+EH++PS+C +FL R +ND+ + AK+ G+ V + KR P P+ V Sbjct: 83 ILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVT 142 Query: 213 -EGTTIETVTPIPYDVV 260 + E + P+ +++V Sbjct: 143 TQNNEPELLAPLRFEIV 159
>RL21_ENTHI (P38653) 60S ribosomal protein L21| Length = 166 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 9/81 (11%) Frame = +3 Query: 39 IIKKRIHVRVEHVQPSRCNEEFLQRKL-------NNDKLKAEAKARGEVISTKRQPAGPK 197 I+ KR+H+ EH++PS C ++FL+RK N +LK E K + KR P P+ Sbjct: 84 IVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKEGKPL-LPLPAKRLPKQPR 142 Query: 198 PGFMVEGTTIE--TVTPIPYD 254 P +++G I+ TV P+ ++ Sbjct: 143 PAELIKGADIKFTTVAPLKFE 163
>RL21_ENCCU (Q8SRW8) 60S ribosomal protein L21| Length = 160 Score = 42.7 bits (99), Expect = 4e-04 Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%) Frame = +3 Query: 48 KRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVIS-TKRQPAGPK 197 K+I VR+EHV+ SRC+EE +R L ++ +A++RG V++ +KR+ GP+ Sbjct: 86 KKIIVRIEHVRKSRCSEESQKRILMAAEMARDAESRGVVLAPSKRKIEGPR 136
>PACC_KLULA (Q6CQ07) pH-response transcription factor pacC/RIM101| Length = 517 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 Query: 51 RIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKP 200 R+HV+++ S CN++F + + LK K E +S ++ GPKP Sbjct: 169 RVHVQLKPFACSTCNKKFKRPQ----DLKKHLKVHNEELSLLKKKRGPKP 214
>FAD6C_SPIOL (P48629) Omega-6 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 447 Score = 29.3 bits (64), Expect = 4.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -2 Query: 185 WLPLCADDLTTGLGLRLQLVIVEFPLEELLIAPGWLHV 72 WLP+ +D+ + GLR L+ PL + WL V Sbjct: 223 WLPIMKEDIESSPGLRKALIYAYGPLRTWMSIAHWLKV 260
>TBB_BOMMO (P41385) Tubulin beta chain (Beta tubulin)| Length = 450 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -2 Query: 272 LEIVDDIVR---DGCDCLNGGALHHEPGLG 192 LE V D+VR +GCDCL G L H G G Sbjct: 113 LETVLDVVRKEAEGCDCLQGFQLVHSLGGG 142
>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1| Length = 1183 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Frame = +3 Query: 81 PSRCNEEFLQRKLNN---DKLKAEAKARGEV 164 P C F Q+KL++ +K+K EAKA GE+ Sbjct: 305 PDPCPTPFYQQKLDDFEREKMKEEAKANGEI 335
>ZN691_MOUSE (Q3TDE8) Zinc finger protein 691| Length = 283 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +3 Query: 24 RSATGIIKKRIHVRVEHVQPSRCNEEFLQR 113 RS+ I +RIH+ +H Q ++C E F +R Sbjct: 122 RSSNRIRHERIHLEEKHYQCAKCQESFRRR 151
>HN_PI3HU (P12563) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/71 (25%), Positives = 28/71 (39%) Frame = +3 Query: 69 EHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEGTTIETVTPIP 248 + V P R + + LN D ++ T + P PG + TT++ P Sbjct: 135 QEVPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLTMPTTVDGCVRTP 194 Query: 249 YDVVNDLKGGY 281 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>HN_PI3HA (P12561) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/71 (25%), Positives = 28/71 (39%) Frame = +3 Query: 69 EHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEGTTIETVTPIP 248 + V P R + + LN D ++ T + P PG + TT++ P Sbjct: 135 QEVPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTP 194 Query: 249 YDVVNDLKGGY 281 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>HN_PI3H4 (P08492) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/71 (25%), Positives = 28/71 (39%) Frame = +3 Query: 69 EHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEGTTIETVTPIP 248 + V P R + + LN D ++ T + P PG + TT++ P Sbjct: 135 QEVPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTP 194 Query: 249 YDVVNDLKGGY 281 V+NDL Y Sbjct: 195 SLVINDLIYAY 205
>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)| Length = 4377 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Frame = +3 Query: 48 KRIHVRVEHVQPSRCNEEFLQ----RKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVE 215 K + V V VQ + E+ +Q +K+ + + K + RG +T++Q P P E Sbjct: 3090 KTLPVYVSFVQVGKQYEKEIQQGGVKKIISQECKTVQETRGTFYTTRQQKQPPSPQGSPE 3149 Query: 216 GTTIETVT 239 T+E V+ Sbjct: 3150 DDTLEQVS 3157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,404,610 Number of Sequences: 219361 Number of extensions: 1004044 Number of successful extensions: 3571 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3570 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
