| Clone Name | bags22e05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132F23, full insert sequence Length = 1059 Score = 299 bits (151), Expect = 5e-78 Identities = 286/331 (86%) Strand = Plus / Plus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||| ||||| |||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct: 464 ttcaccaatctttctgacatatgggctaaggaaattgacctctattctacaaaccaggat 523 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtcacgaag 125 || || ||||||||||| ||||||||||| ||||||||||| ||||| ||||| || || Sbjct: 524 tgtattaagatgcttgtcggaaacaaagttgacaaggaaagtgagagagctgtgacaaaa 583 Query: 126 aaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtgcaaag 185 || || |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || Sbjct: 584 aaagagggcattgaatttgccagggaatacgggtgtttatttctagaatgcagtgctaaa 643 Query: 186 accaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagacacgccg 245 |||||||||||||| || || ||||||||||| ||||| ||||||||||| ||||| || Sbjct: 644 accaaagtgaatgttgaacaatgctttgaggaactcgtcctgaagatattggacacacca 703 Query: 246 agcctgctggcggatgcgtcctctggggcgaagaagaacatcttcaagcagaaggcgccg 305 ||||| |||| ||||| ||||| || ||||||||||||||||||||||||||| |||| Sbjct: 704 agcctcttggctgatgcttcctcaggtgcgaagaagaacatcttcaagcagaagccgcca 763 Query: 306 gaggctgatgctgcggcgagcggctgctgtt 336 || || |||||||| || ||| ||||||||| Sbjct: 764 gaagccgatgctgccgctagcagctgctgtt 794
>dbj|AK104720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A11, full insert sequence Length = 1059 Score = 299 bits (151), Expect = 5e-78 Identities = 286/331 (86%) Strand = Plus / Plus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||| ||||| |||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct: 464 ttcaccaatctttctgacatatgggctaaggaaattgacctctattctacaaaccaggat 523 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtcacgaag 125 || || ||||||||||| ||||||||||| ||||||||||| ||||| ||||| || || Sbjct: 524 tgtattaagatgcttgtcggaaacaaagttgacaaggaaagtgagagagctgtgacaaaa 583 Query: 126 aaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtgcaaag 185 || || |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || Sbjct: 584 aaagagggcattgaatttgccagggaatacgggtgtttatttctagaatgcagtgctaaa 643 Query: 186 accaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagacacgccg 245 |||||||||||||| || || ||||||||||| ||||| ||||||||||| ||||| || Sbjct: 644 accaaagtgaatgttgaacaatgctttgaggaactcgtcctgaagatattggacacacca 703 Query: 246 agcctgctggcggatgcgtcctctggggcgaagaagaacatcttcaagcagaaggcgccg 305 ||||| |||| ||||| ||||| || ||||||||||||||||||||||||||| |||| Sbjct: 704 agcctcttggctgatgcttcctcaggtgcgaagaagaacatcttcaagcagaagccgcca 763 Query: 306 gaggctgatgctgcggcgagcggctgctgtt 336 || || |||||||| || ||| ||||||||| Sbjct: 764 gaagccgatgctgccgctagcagctgctgtt 794
>gb|AY104355.1| Zea mays PCO115514 mRNA sequence Length = 1053 Score = 250 bits (126), Expect = 4e-63 Identities = 231/266 (86%) Strand = Plus / Plus Query: 3 acgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccag 62 |||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 469 acgttcaccaatctttctgatatatgggccaaggaaattgacctgtattcaaccaaccag 528 Query: 63 gactgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtcacg 122 ||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 529 gactgtgtaaagatgcttgttggaaataaagtagacaaggaaagtgagagggctgtcacg 588 Query: 123 aagaaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtgca 182 || ||||| || ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| Sbjct: 589 aaaaaggagggaattgaatttgccagggaatacggttgtttgtttctagaatgcagtgcg 648 Query: 183 aagaccaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagacacg 242 || || ||||| || || || ||||| |||||||| || || || ||||| ||||||||| Sbjct: 649 aaaacaaaagtaaacgtagaacagtgttttgaggaactggttctaaagatcttagacacg 708 Query: 243 ccgagcctgctggcggatgcgtcctc 268 || ||||| ||||||||||| ||||| Sbjct: 709 ccaagcctcctggcggatgcttcctc 734 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 276 aagaagaacatcttcaagcagaaggc 301 |||||||||||||||||||||||||| Sbjct: 748 aagaagaacatcttcaagcagaaggc 773
>ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G43890 (ATRAB18) mRNA, complete cds Length = 990 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Plus Query: 1 acacgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaacc 60 ||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || | Sbjct: 400 acacgttcacaaacctatcagacatatgggctaaggaaatcgacctctattcgactaatc 459 Query: 61 aggactgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtca 120 |||| ||||| ||||||||||| || || ||||| || ||||| || || || ||||| Sbjct: 460 aggattgcattaagatgcttgtcgggaataaagttgataaggagagtgaaagagctgttt 519 Query: 121 cgaagaaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtg 180 | || || |||||||| || ||||| |||||||||| ||||| |||||||| || |||| Sbjct: 520 ctaaaaaagaaggcatagactttgctcgggagtacggatgtttgtttctggagtgtagtg 579 Query: 181 caaagaccaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagaca 240 ||||||| ||| || || ||||| || ||||| ||||| || || |||||||| || | Sbjct: 580 caaagactcgagtcaacgttgagcaatgttttgaagagcttgttcttaagatattggaaa 639 Query: 241 cgccgag 247 ||||||| Sbjct: 640 cgccgag 646
>gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890) mRNA, complete cds Length = 670 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Plus Query: 1 acacgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaacc 60 ||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || | Sbjct: 293 acacgttcacaaacctatcagacatatgggctaaggaaatcgacctctattcgactaatc 352 Query: 61 aggactgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtca 120 |||| ||||| ||||||||||| || || ||||| || ||||| || || || ||||| Sbjct: 353 aggattgcattaagatgcttgtcgggaataaagttgataaggagagtgaaagagctgttt 412 Query: 121 cgaagaaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtg 180 | || || |||||||| || ||||| |||||||||| ||||| |||||||| || |||| Sbjct: 413 ctaaaaaagaaggcatagactttgctcgggagtacggatgtttgtttctggagtgtagtg 472 Query: 181 caaagaccaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagaca 240 ||||||| ||| || || ||||| || ||||| ||||| || || |||||||| || | Sbjct: 473 caaagactcgagtcaacgttgagcaatgttttgaagagcttgttcttaagatattggaaa 532 Query: 241 cgccgag 247 ||||||| Sbjct: 533 cgccgag 539
>gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890) mRNA, complete cds Length = 864 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Plus Query: 1 acacgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaacc 60 ||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || | Sbjct: 364 acacgttcacaaacctatcagacatatgggctaaggaaatcgacctctattcgactaatc 423 Query: 61 aggactgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtca 120 |||| ||||| ||||||||||| || || ||||| || ||||| || || || ||||| Sbjct: 424 aggattgcattaagatgcttgtcgggaataaagttgataaggagagtgaaagagctgttt 483 Query: 121 cgaagaaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtg 180 | || || |||||||| || ||||| |||||||||| ||||| |||||||| || |||| Sbjct: 484 ctaaaaaagaaggcatagactttgctcgggagtacggatgtttgtttctggagtgtagtg 543 Query: 181 caaagaccaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagaca 240 ||||||| ||| || || ||||| || ||||| ||||| || || |||||||| || | Sbjct: 544 caaagactcgagtcaacgttgagcaatgttttgaagagcttgttcttaagatattggaaa 603 Query: 241 cgccgag 247 ||||||| Sbjct: 604 cgccgag 610
>gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete sequence Length = 884 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Plus Query: 1 acacgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaacc 60 ||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || | Sbjct: 403 acacgttcacaaacctatcagacatatgggctaaggaaatcgacctctattcgactaatc 462 Query: 61 aggactgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtca 120 |||| ||||| ||||||||||| || || ||||| || ||||| || || || ||||| Sbjct: 463 aggattgcattaagatgcttgtcgggaataaagttgataaggagagtgaaagagctgttt 522 Query: 121 cgaagaaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtg 180 | || || |||||||| || ||||| |||||||||| ||||| |||||||| || |||| Sbjct: 523 ctaaaaaagaaggcatagactttgctcgggagtacggatgtttgtttctggagtgtagtg 582 Query: 181 caaagaccaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagaca 240 ||||||| ||| || || ||||| || ||||| ||||| || || |||||||| || | Sbjct: 583 caaagactcgagtcaacgttgagcaatgttttgaagagcttgttcttaagatattggaaa 642 Query: 241 cgccgag 247 ||||||| Sbjct: 643 cgccgag 649
>gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA, complete cds Length = 700 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Plus Query: 1 acacgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaacc 60 ||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || | Sbjct: 312 acacgttcacaaacctatcagacatatgggctaaggaaatcgacctctattcgactaatc 371 Query: 61 aggactgcataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtca 120 |||| ||||| ||||||||||| || || ||||| || ||||| || || || ||||| Sbjct: 372 aggattgcattaagatgcttgtcgggaataaagttgataaggagagtgaaagagctgttt 431 Query: 121 cgaagaaggaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtg 180 | || || |||||||| || ||||| |||||||||| ||||| |||||||| || |||| Sbjct: 432 ctaaaaaagaaggcatagactttgctcgggagtacggatgtttgtttctggagtgtagtg 491 Query: 181 caaagaccaaagtgaatgtggagcagtgctttgaggagctcgtgctgaagatattagaca 240 ||||||| ||| || || ||||| || ||||| ||||| || || |||||||| || | Sbjct: 492 caaagactcgagtcaacgttgagcaatgttttgaagagcttgttcttaagatattggaaa 551 Query: 241 cgccgag 247 ||||||| Sbjct: 552 cgccgag 558
>emb|Z73936.1|LJRAB1Y L.japonicus mRNA for small GTP-binding protein, RAB1Y Length = 924 Score = 89.7 bits (45), Expect = 9e-15 Identities = 141/173 (81%) Strand = Plus / Plus Query: 9 acaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggactgc 68 |||||||| ||||| |||||||| |||||||| || || ||||| || || || |||||| Sbjct: 297 acaaatctttctgaaatatgggcaaaggaaatagatctttattcaacaaatcaagactgc 356 Query: 69 ataaagatgcttgtaggaaacaaagtggacaaggaaagcgagagggctgtcacgaagaag 128 || ||||||||||| ||||||||||| |||||||| || || |||| ||| | ||||| Sbjct: 357 atcaagatgcttgttggaaacaaagtagacaaggagagtgatagggttgtgagtaagaaa 416 Query: 129 gaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtgc 181 || || || || ||||| ||||| || || ||| ||||| | ||||||||||| Sbjct: 417 gagggaatagactttgccagggaatatggttgtctatttatcgaatgcagtgc 469
>gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete sequence Length = 112428 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 9 acaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggactgc 68 |||||||| ||||| |||||||| |||||||| ||||| ||||| || || || |||||| Sbjct: 45845 acaaatctctctgaaatatgggcaaaggaaatagacctttattcaacaaatcaagactgc 45904 Query: 69 ataaagatgcttgtaggaaacaaagt 94 || ||||||||||| ||||||||||| Sbjct: 45905 atgaagatgcttgttggaaacaaagt 45930
>gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana BAC F9C16 from chromosome I, complete sequence Length = 122543 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 1 acacgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaacc 60 ||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || | Sbjct: 8029 acacgttcacaaacctatcagacatatgggctaaggaaatcgacctctattcgactaatc 8088 Query: 61 aggactgcataaagatgcttgt 82 |||| ||||| ||||||||||| Sbjct: 8089 aggattgcattaagatgcttgt 8110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 129 gaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtgcaaagac 187 |||||||| || ||||| |||||||||| ||||| |||||||| || ||||||||||| Sbjct: 8236 gaaggcatagactttgctcgggagtacggatgtttgtttctggagtgtagtgcaaagac 8294
>gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28H19 genomic sequence, complete sequence Length = 131692 Score = 83.8 bits (42), Expect = 5e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 1 acacgttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaacc 60 ||||||||||||| || || ||||||||||| |||||||| ||||| |||||||| || | Sbjct: 124265 acacgttcacaaacctatcagacatatgggctaaggaaatcgacctctattcgactaatc 124324 Query: 61 aggactgcataaagatgcttgt 82 |||| ||||| ||||||||||| Sbjct: 124325 aggattgcattaagatgcttgt 124346 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 129 gaaggcattgattttgcgagggagtacgggtgtttatttctggaatgcagtgcaaagac 187 |||||||| || ||||| |||||||||| ||||| |||||||| || ||||||||||| Sbjct: 124472 gaaggcatagactttgctcgggagtacggatgtttgtttctggagtgtagtgcaaagac 124530
>ref|NM_196819.1| Oryza sativa (japonica cultivar-group) putative GTP-binding protein (OSJNBa0018F16.14), mRNA Length = 669 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 63 gactgcataaagatgcttgtaggaaacaaagtggacaagga 103 ||||||||||| |||||||| ||||||||| | |||||||| Sbjct: 388 gactgcataaaaatgcttgttggaaacaaaattgacaagga 428
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.008 Identities = 79/97 (81%) Strand = Plus / Plus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||||||| || |||| |||||||||||||||| || || ||||||| || | || Sbjct: 2537895 ttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagag 2537954 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaagg 102 ||||| || |||||||| || ||||| |||||||||| Sbjct: 2537955 tgcatcaaaatgcttgtcgggaacaaggtggacaagg 2537991
>ref|XM_754656.1| Ustilago maydis 521 hypothetical protein (UM03602.1) partial mRNA Length = 702 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 79 ttgtaggaaacaaagtggacaagga 103 ||||||||||||||||||||||||| Sbjct: 365 ttgtaggaaacaaagtggacaagga 389
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 50.1 bits (25), Expect = 0.008 Identities = 79/97 (81%) Strand = Plus / Minus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||||||| || |||| |||||||||||||||| || || ||||||| || | || Sbjct: 132199 ttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagag 132140 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaagg 102 ||||| || |||||||| || ||||| |||||||||| Sbjct: 132139 tgcatcaaaatgcttgtcgggaacaaggtggacaagg 132103
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.008 Identities = 79/97 (81%) Strand = Plus / Plus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||||||| || |||| |||||||||||||||| || || ||||||| || | || Sbjct: 2538005 ttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagag 2538064 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaagg 102 ||||| || |||||||| || ||||| |||||||||| Sbjct: 2538065 tgcatcaaaatgcttgtcgggaacaaggtggacaagg 2538101
>dbj|AK102843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109P10, full insert sequence Length = 1101 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 63 gactgcataaagatgcttgtaggaaacaaagtggacaagga 103 ||||||||||| |||||||| ||||||||| | |||||||| Sbjct: 570 gactgcataaaaatgcttgttggaaacaaaattgacaagga 610
>ref|XM_470212.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 Score = 48.1 bits (24), Expect = 0.030 Identities = 78/96 (81%) Strand = Plus / Plus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||||||| || |||| |||||||||||||||| || || ||||||| || | || Sbjct: 301 ttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagag 360 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaag 101 ||||| || |||||||| || ||||| ||||||||| Sbjct: 361 tgcatcaaaatgcttgtcgggaacaaggtggacaag 396
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 63 gactgcataaagatgcttgtaggaaacaaagtggacaagg 102 ||||||||||| |||||||| ||||||||| | ||||||| Sbjct: 59446 gactgcataaaaatgcttgttggaaacaaaattgacaagg 59407
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 63 gactgcataaagatgcttgtaggaaacaaagtggacaagg 102 ||||||||||| |||||||| ||||||||| | ||||||| Sbjct: 16180557 gactgcataaaaatgcttgttggaaacaaaattgacaagg 16180518
>dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043D11, full insert sequence Length = 1002 Score = 48.1 bits (24), Expect = 0.030 Identities = 78/96 (81%) Strand = Plus / Plus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||||||| || |||| |||||||||||||||| || || ||||||| || | || Sbjct: 417 ttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagag 476 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaag 101 ||||| || |||||||| || ||||| ||||||||| Sbjct: 477 tgcatcaaaatgcttgtcgggaacaaggtggacaag 512
>dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F09, full insert sequence Length = 1083 Score = 48.1 bits (24), Expect = 0.030 Identities = 78/96 (81%) Strand = Plus / Plus Query: 6 ttcacaaatctgtctgacatatgggccaaggaaattgacctgtattcgaccaaccaggac 65 ||||||||| || |||| |||||||||||||||| || || ||||||| || | || Sbjct: 425 ttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagag 484 Query: 66 tgcataaagatgcttgtaggaaacaaagtggacaag 101 ||||| || |||||||| || ||||| ||||||||| Sbjct: 485 tgcatcaaaatgcttgtcgggaacaaggtggacaag 520
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 63 gactgcataaagatgcttgtaggaaacaaagtggacaagg 102 ||||||||||| |||||||| ||||||||| | ||||||| Sbjct: 16188798 gactgcataaaaatgcttgttggaaacaaaattgacaagg 16188759
>gb|AY108713.1| Zea mays PCO101165 mRNA sequence Length = 755 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Plus Query: 61 aggactgcataaagatgcttgtaggaaacaaagtggacaagga 103 |||| ||||| || |||||||| ||||| |||||||||||||| Sbjct: 610 aggaatgcatcaaaatgcttgttggaaataaagtggacaagga 652
>ref|XM_510006.1| PREDICTED: Pan troglodytes similar to muscle beta spectrin (LOC452970), mRNA Length = 7365 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 1979 tggagcagtgctttgaggagct 2000
>ref|NM_001024858.1| Homo sapiens spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) (SPTB), transcript variant 1, mRNA Length = 10064 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 1898 tggagcagtgctttgaggagct 1919
>ref|NM_000347.4| Homo sapiens spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) (SPTB), transcript variant 2, mRNA Length = 6695 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 1898 tggagcagtgctttgaggagct 1919
>emb|CR792425.6| Zebrafish DNA sequence from clone DKEY-81N9 in linkage group 2, complete sequence Length = 168311 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 511 atcagttggtgagtcagtcagtgagt 536 |||||||||| ||||||||||||||| Sbjct: 126218 atcagttggtcagtcagtcagtgagt 126243
>emb|AL138897.10| Human DNA sequence from clone RP11-231D11 on chromosome 10, complete sequence Length = 59779 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 518 ggtgagtcagtcagtgagtgga 539 |||||||||||||||||||||| Sbjct: 50800 ggtgagtcagtcagtgagtgga 50779
>gb|AF013178.1|AH005869S07 Homo sapiens beta-spectrin (HSpTB1) gene, exon 14 and partial cds Length = 1134 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 151 tggagcagtgctttgaggagct 172
>emb|BX511251.16| Zebrafish DNA sequence from clone CH211-222O13 in linkage group 2, complete sequence Length = 169250 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 511 atcagttggtgagtcagtcagtgagt 536 |||||||||| ||||||||||||||| Sbjct: 156358 atcagttggtcagtcagtcagtgagt 156383
>gb|AC079080.5| Homo sapiens BAC clone RP11-162O12 from 4, complete sequence Length = 161647 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 517 tggtgagtcagtcagtgagtgg 538 |||||||||||||||||||||| Sbjct: 151055 tggtgagtcagtcagtgagtgg 151076
>emb|BX088549.9| Zebrafish DNA sequence from clone CH211-208G1 in linkage group 18, complete sequence Length = 195282 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 511 atcagttggtgagtcagtcagtgagtggac 540 |||||||||| ||||||||||| ||||||| Sbjct: 145546 atcagttggtcagtcagtcagtcagtggac 145517
>emb|AL121774.5|CNS01DSF Human chromosome 14 DNA sequence BAC R-430G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171030 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 40147 tggagcagtgctttgaggagct 40168
>gb|U00828.1|HSU00828 Human beta-spectrin (HSPTB1) gene, Humbspec.14 exon sequene Length = 1134 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 151 tggagcagtgctttgaggagct 172
>dbj|AB209415.1| Homo sapiens mRNA for spectrin, beta, erythrocytic (includes spherocytosis, clinical type I) variant protein Length = 7481 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 1987 tggagcagtgctttgaggagct 2008
>gb|J05500.1|HUMSPTB Human beta-spectrin (SPTB) mRNA, complete cds Length = 6765 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tggagcagtgctttgaggagct 220 |||||||||||||||||||||| Sbjct: 1939 tggagcagtgctttgaggagct 1960
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 cgaagaagaacatcttcaagc 294 ||||||||||||||||||||| Sbjct: 273718 cgaagaagaacatcttcaagc 273738
>emb|AL844597.12| Zebrafish DNA sequence from clone DKEY-9M10 in linkage group 10, complete sequence Length = 78650 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 512 tcagttggtgagtcagtcagtgagt 536 ||||||||| ||||||||||||||| Sbjct: 54261 tcagttggtcagtcagtcagtgagt 54237
>emb|CR753865.8| Zebrafish DNA sequence from clone DKEY-172B2 in linkage group 14, complete sequence Length = 134371 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 512 tcagttggtgagtcagtcagt 532 ||||||||||||||||||||| Sbjct: 42255 tcagttggtgagtcagtcagt 42275
>emb|AL590811.10| Human DNA sequence from clone RP11-208D8 on chromosome 13, complete sequence Length = 38580 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 tttatttctggaatgcagtgc 181 ||||||||||||||||||||| Sbjct: 8910 tttatttctggaatgcagtgc 8890
>emb|AL450345.6| Human DNA sequence from clone RP11-300M24 on chromosome 6 Contains a novel gene, complete sequence Length = 183342 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 ggtgagtcagtcagtgagtgg 538 ||||||||||||||||||||| Sbjct: 13169 ggtgagtcagtcagtgagtgg 13149
>emb|AL035691.17|HS249F5 Human DNA sequence from clone RP1-249F5 on chromosome 6q26-27 Contains a novel gene, the MAS1 oncogene, the 5' end of the IGF2R gene for insulin-like growth factor 2 receptor (cation-independent mannose-6 phosphate receptor, Insulin-like growth factor-2 receptor (mannose-6-phosphate receptor, cation-independent)) (MPRI, CD222, CIMPR, M6P-R) and two CpG islands, complete sequence Length = 129968 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 518 ggtgagtcagtcagtgagtggacct 542 ||||||||||| ||||||||||||| Sbjct: 28648 ggtgagtcagtgagtgagtggacct 28672
>emb|CR847931.7| Zebrafish DNA sequence from clone DKEY-182I3 in linkage group 15, complete sequence Length = 134584 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 512 tcagttggtgagtcagtcagtgagt 536 ||||||||| ||||||||||||||| Sbjct: 57907 tcagttggtcagtcagtcagtgagt 57931
>gb|AY293855.1| Homo sapiens insulin-like growth factor 2 receptor (IGF2R) gene, complete cds Length = 139947 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 ggtgagtcagtcagtgagtggacct 542 ||||||||||| ||||||||||||| Sbjct: 16570 ggtgagtcagtgagtgagtggacct 16546
>emb|BX950857.8| Zebrafish DNA sequence from clone CH211-203D19 in linkage group 5, complete sequence Length = 156682 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 512 tcagttggtgagtcagtcagtgagt 536 ||||||||| ||||||||||||||| Sbjct: 66280 tcagttggtcagtcagtcagtgagt 66256
>gb|AC080128.21| Homo sapiens 3 BAC RP11-404G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181241 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 ggtgagtcagtcagtgagtgg 538 ||||||||||||||||||||| Sbjct: 64511 ggtgagtcagtcagtgagtgg 64491
>emb|BX470133.27| Zebrafish DNA sequence from clone DKEY-169N7 in linkage group 9, complete sequence Length = 178929 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 512 tcagttggtgagtcagtcagtgagt 536 ||||||||| ||||||||||||||| Sbjct: 138254 tcagttggtcagtcagtcagtgagt 138230
>gb|AF069333.2|AF069333 Homo sapiens insulin-like growth factor II receptor (IGF2R) gene, partial cds Length = 138376 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 ggtgagtcagtcagtgagtggacct 542 ||||||||||| ||||||||||||| Sbjct: 16273 ggtgagtcagtgagtgagtggacct 16249
>gb|AF348209.1|AF348209 Homo sapiens IGF2R gene, complete cds Length = 137436 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 ggtgagtcagtcagtgagtggacct 542 ||||||||||| ||||||||||||| Sbjct: 15333 ggtgagtcagtgagtgagtggacct 15309
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 cgaagaagaacatcttcaagc 294 ||||||||||||||||||||| Sbjct: 1832745 cgaagaagaacatcttcaagc 1832725
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 ggcgccggaggctgatgctgcggcg 323 |||||||||||||| |||||||||| Sbjct: 27342682 ggcgccggaggctgctgctgcggcg 27342658
>emb|BX322787.5| Zebrafish DNA sequence from clone CH211-198H5 in linkage group 7, complete sequence Length = 92049 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 cacaaatctgtctgacatatg 28 ||||||||||||||||||||| Sbjct: 1231 cacaaatctgtctgacatatg 1251
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1493_H11 Length = 106693 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 ggcgccggaggctgatgctgcggcg 323 |||||||||||||| |||||||||| Sbjct: 57615 ggcgccggaggctgctgctgcggcg 57591
>dbj|AK120603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149P10, full insert sequence Length = 2635 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 ggcgccggaggctgatgctgcggcg 323 |||||||||||||| |||||||||| Sbjct: 1173 ggcgccggaggctgctgctgcggcg 1149
>emb|BX005319.6| Zebrafish DNA sequence from clone DKEY-10F23, complete sequence Length = 225639 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 cacaaatctgtctgacatatg 28 ||||||||||||||||||||| Sbjct: 770 cacaaatctgtctgacatatg 750
>emb|Z29591.1|VFGNRPR2 V.faba mRNA for guanine nucleotide regulatory protein (744bp) Length = 744 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gatgcttgtaggaaacaaag 93 |||||||||||||||||||| Sbjct: 334 gatgcttgtaggaaacaaag 353
>emb|CR378670.1| Photobacterium profundum SS9; segment 8/12 Length = 348672 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 ggggcgaagaagaacatcttcaag 293 ||||||| |||||||||||||||| Sbjct: 140875 ggggcgatgaagaacatcttcaag 140852
>emb|AL606605.4|OSJN00049 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089E12, complete sequence Length = 154111 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gcggcgagcggctgctgttg 337 |||||||||||||||||||| Sbjct: 62087 gcggcgagcggctgctgttg 62106
>gb|AC093001.2| Homo sapiens 3 BAC RP11-206M11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161533 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aaacaaagtggacaaggaaa 105 |||||||||||||||||||| Sbjct: 65867 aaacaaagtggacaaggaaa 65848
>gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, complete sequence Length = 189224 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gtttatttctggaatgcagt 179 |||||||||||||||||||| Sbjct: 66679 gtttatttctggaatgcagt 66660
>gb|AC117405.4| Homo sapiens X BAC RP11-340I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153177 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gtttatttctggaatgcagt 179 |||||||||||||||||||| Sbjct: 2385 gtttatttctggaatgcagt 2404
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gcggcgagcggctgctgttg 337 |||||||||||||||||||| Sbjct: 3718666 gcggcgagcggctgctgttg 3718685
>gb|AC007653.5|AC007653 Homo sapiens chromosome , clone RP11-51A1, complete sequence Length = 159926 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gaagaacatcttcaagcaga 297 |||||||||||||||||||| Sbjct: 87620 gaagaacatcttcaagcaga 87601
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gacgatggatgaaaacggtt 419 |||||||||||||||||||| Sbjct: 1629386 gacgatggatgaaaacggtt 1629405
>gb|AC007687.17| Homo sapiens 3 BAC RP11-494H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163650 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gaagaacatcttcaagcaga 297 |||||||||||||||||||| Sbjct: 51267 gaagaacatcttcaagcaga 51248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,303,479 Number of Sequences: 3902068 Number of extensions: 4303479 Number of successful extensions: 83574 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 83294 Number of HSP's gapped (non-prelim): 281 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)