ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22e02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193379.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1980 Score = 137 bits (69), Expect = 1e-29 Identities = 167/202 (82%) Strand = Plus / Plus Query: 1 cacaatgaggctcggagcggatgtgattgtttttacacagaaccnnnnnnnctggacacc 60 |||||||||||| ||||| |||||||||||||||||||| |||| |||| || Sbjct: 702 cacaatgaggcttggagcagatgtgattgtttttacacaaaaccaaaataactgggtgcc 761 Query: 61 gacaagaagtattggtcttctttcttacacatttctgatggaaacaggctgcgatgatgt 120 ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| Sbjct: 762 aacaagaagtatcggtcttctttcatacacatttttgatggaaactggctgcgatgatgt 821 Query: 121 attggtgccaacagtagactaccattacgatcttacaacttcttcgtatactcagctgtt 180 ||||| |||||||| || || || || ||| | |||| |||||||||||||| || | Sbjct: 822 tttggttccaacagttgattatcagtatgatatatcaacagcttcgtatactcagatgct 881 Query: 181 acgtcataatcagaaactcttc 202 |||||| ||||||| |||||| Sbjct: 882 gcgtcatgatcagaagctcttc 903
>dbj|AK101868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070D24, full insert sequence Length = 3160 Score = 137 bits (69), Expect = 1e-29 Identities = 167/202 (82%) Strand = Plus / Plus Query: 1 cacaatgaggctcggagcggatgtgattgtttttacacagaaccnnnnnnnctggacacc 60 |||||||||||| ||||| |||||||||||||||||||| |||| |||| || Sbjct: 763 cacaatgaggcttggagcagatgtgattgtttttacacaaaaccaaaataactgggtgcc 822 Query: 61 gacaagaagtattggtcttctttcttacacatttctgatggaaacaggctgcgatgatgt 120 ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| Sbjct: 823 aacaagaagtatcggtcttctttcatacacatttttgatggaaactggctgcgatgatgt 882 Query: 121 attggtgccaacagtagactaccattacgatcttacaacttcttcgtatactcagctgtt 180 ||||| |||||||| || || || || ||| | |||| |||||||||||||| || | Sbjct: 883 tttggttccaacagttgattatcagtatgatatatcaacagcttcgtatactcagatgct 942 Query: 181 acgtcataatcagaaactcttc 202 |||||| ||||||| |||||| Sbjct: 943 gcgtcatgatcagaagctcttc 964
>dbj|AK065436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013024A18, full insert sequence Length = 3714 Score = 137 bits (69), Expect = 1e-29 Identities = 167/202 (82%) Strand = Plus / Plus Query: 1 cacaatgaggctcggagcggatgtgattgtttttacacagaaccnnnnnnnctggacacc 60 |||||||||||| ||||| |||||||||||||||||||| |||| |||| || Sbjct: 1403 cacaatgaggcttggagcagatgtgattgtttttacacaaaaccaaaataactgggtgcc 1462 Query: 61 gacaagaagtattggtcttctttcttacacatttctgatggaaacaggctgcgatgatgt 120 ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| Sbjct: 1463 aacaagaagtatcggtcttctttcatacacatttttgatggaaactggctgcgatgatgt 1522 Query: 121 attggtgccaacagtagactaccattacgatcttacaacttcttcgtatactcagctgtt 180 ||||| |||||||| || || || || ||| | |||| |||||||||||||| || | Sbjct: 1523 tttggttccaacagttgattatcagtatgatatatcaacagcttcgtatactcagatgct 1582 Query: 181 acgtcataatcagaaactcttc 202 |||||| ||||||| |||||| Sbjct: 1583 gcgtcatgatcagaagctcttc 1604
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 2e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 62 acaagaagtattggtcttctttcttacacatttctgatggaaacaggctgcgatgatgta 121 ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| Sbjct: 20495491 acaagaagtatcggtcttctttcatacacatttttgatggaaactggctgcgatgatgtt 20495432 Query: 122 ttggtgccaacagtag 137 ||||| |||||||||| Sbjct: 20495431 ttggttccaacagtag 20495416 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 1 cacaatgaggctcggagcggatgtgattgtttttacacagaacc 44 |||||||||||| ||||| |||||||||||||||||||| |||| Sbjct: 20496042 cacaatgaggcttggagcagatgtgattgtttttacacaaaacc 20495999 Score = 42.1 bits (21), Expect = 0.64 Identities = 36/41 (87%) Strand = Plus / Minus Query: 162 cttcgtatactcagctgttacgtcataatcagaaactcttc 202 |||||||||||||| || | |||||| ||||||| |||||| Sbjct: 20495294 cttcgtatactcagatgctgcgtcatgatcagaagctcttc 20495254
>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1156H12 Length = 159509 Score = 103 bits (52), Expect = 2e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 62 acaagaagtattggtcttctttcttacacatttctgatggaaacaggctgcgatgatgta 121 ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| Sbjct: 19313 acaagaagtatcggtcttctttcatacacatttttgatggaaactggctgcgatgatgtt 19254 Query: 122 ttggtgccaacagtag 137 ||||| |||||||||| Sbjct: 19253 ttggttccaacagtag 19238 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 1 cacaatgaggctcggagcggatgtgattgtttttacacagaacc 44 |||||||||||| ||||| |||||||||||||||||||| |||| Sbjct: 19864 cacaatgaggcttggagcagatgtgattgtttttacacaaaacc 19821 Score = 42.1 bits (21), Expect = 0.64 Identities = 36/41 (87%) Strand = Plus / Minus Query: 162 cttcgtatactcagctgttacgtcataatcagaaactcttc 202 |||||||||||||| || | |||||| ||||||| |||||| Sbjct: 19116 cttcgtatactcagatgctgcgtcatgatcagaagctcttc 19076
>gb|AC109627.8| Mus musculus chromosome 16, clone RP24-226M22, complete sequence Length = 176288 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 tttctgatggaaacaggctgcgatg 116 |||||| |||||||||||||||||| Sbjct: 133188 tttctggtggaaacaggctgcgatg 133164
>gb|AC113067.8| Mus musculus chromosome 16, clone RP23-264I14, complete sequence Length = 246802 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 tttctgatggaaacaggctgcgatg 116 |||||| |||||||||||||||||| Sbjct: 7843 tttctggtggaaacaggctgcgatg 7867
>emb|CT571273.12| Mouse DNA sequence from clone RP23-48L21 on chromosome 16, complete sequence Length = 142519 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 tttctgatggaaacaggctgcgatg 116 |||||| |||||||||||||||||| Sbjct: 52399 tttctggtggaaacaggctgcgatg 52423
>ref|NM_124456.1| Arabidopsis thaliana ATP binding AT5G50780 mRNA, complete cds Length = 2472 Score = 40.1 bits (20), Expect = 2.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 acaatgaggctcggagcggatgtgattgtttt 33 ||||||||||| ||||| ||||| |||||||| Sbjct: 748 acaatgaggcttggagctgatgtcattgtttt 779
>ref|XM_644921.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (252.t00011) partial mRNA Length = 1341 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 aagaagtattggtcttcttt 83 |||||||||||||||||||| Sbjct: 788 aagaagtattggtcttcttt 769
>emb|X78898.1|SCXIVL S.cerevisiae DNA of chromosome XIV Length = 35161 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aagtattggtcttctttctt 86 |||||||||||||||||||| Sbjct: 24922 aagtattggtcttctttctt 24941
>emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15 Length = 123209 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 ggatgtgattgtttttacacagaa 42 |||||||||||||||||| ||||| Sbjct: 63980 ggatgtgattgtttttactcagaa 63957
>dbj|AB023037.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB16 Length = 66087 Score = 40.1 bits (20), Expect = 2.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 2 acaatgaggctcggagcggatgtgattgtttt 33 ||||||||||| ||||| ||||| |||||||| Sbjct: 55573 acaatgaggcttggagctgatgtcattgtttt 55604
>emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20, complete sequence Length = 153569 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 ggatgtgattgtttttacacagaa 42 ||||||| |||||||||||||||| Sbjct: 9552 ggatgtgtttgtttttacacagaa 9529
>emb|Z71477.1|SCYNL201C S.cerevisiae chromosome XIV reading frame ORF YNL201c Length = 3256 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aagtattggtcttctttctt 86 |||||||||||||||||||| Sbjct: 3050 aagtattggtcttctttctt 3069
>emb|Z71476.1|SCYNL200C S.cerevisiae chromosome XIV reading frame ORF YNL200c Length = 1722 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aagtattggtcttctttctt 86 |||||||||||||||||||| Sbjct: 303 aagtattggtcttctttctt 322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,488,545 Number of Sequences: 3902068 Number of extensions: 1488545 Number of successful extensions: 103691 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103628 Number of HSP's gapped (non-prelim): 60 length of query: 202 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 180 effective length of database: 17,147,199,772 effective search space: 3086495958960 effective search space used: 3086495958960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
