ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22d20 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 372 bits (955), Expect = e-103 Identities = 183/219 (83%), Positives = 195/219 (89%) Frame = +1 Query: 7 GMDEESAYKSTVEXXXXXXXXXXXXXXMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYE 186 GM E+ AYK+TVE ML VYN+LS +GKKEF KAYSASFYPCM+ILYE Sbjct: 326 GMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYE 385 Query: 187 CYEDVASGSEIRSVVLAGRRFYDKEGLPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLH 366 CYEDVASGSEIRSVVLAGRRFY+KEGLPAFPMGKIDQTRMWKVGE+VRSTRP GDLGPL+ Sbjct: 386 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLY 445 Query: 367 PFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTA 546 PFTAGV+VA+MMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTA Sbjct: 446 PFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA 505 Query: 547 RLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMS 663 RLGSRKWAPRFDYILTQQA V VD APINQDLISNF+S Sbjct: 506 RLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVS 544
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 364 bits (935), Expect = e-100 Identities = 180/219 (82%), Positives = 192/219 (87%) Frame = +1 Query: 7 GMDEESAYKSTVEXXXXXXXXXXXXXXMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYE 186 GM E+ AYK+TVE ML +YNSLS EGKK+F AYSAS+YP MDILYE Sbjct: 342 GMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYE 401 Query: 187 CYEDVASGSEIRSVVLAGRRFYDKEGLPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLH 366 CYEDVASGSEIRSVVLAGRRFY+KEGLPAFPMGKIDQTRMWKVGEKVRS RP GDLGPL+ Sbjct: 402 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLY 461 Query: 367 PFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTA 546 PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIE+VDSLNPFMHARGV+FMVDNCSTTA Sbjct: 462 PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTA 521 Query: 547 RLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMS 663 RLGSRKWAPRFDYIL+QQA V VD APINQDLISNF+S Sbjct: 522 RLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLS 560
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 360 bits (925), Expect = 2e-99 Identities = 178/219 (81%), Positives = 189/219 (86%) Frame = +1 Query: 7 GMDEESAYKSTVEXXXXXXXXXXXXXXMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYE 186 GM E+ AYK+TVE ML VYNSLS EGKK+F AYSASFYPCM+ILYE Sbjct: 336 GMSEDLAYKNTVECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYE 395 Query: 187 CYEDVASGSEIRSVVLAGRRFYDKEGLPAFPMGKIDQTRMWKVGEKVRSTRPDGDLGPLH 366 CYEDV SGSEIRSVVLAGRRFY+KEGLPAFPMG IDQTRMWKVGE+VR +RP GDLGPL+ Sbjct: 396 CYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLY 455 Query: 367 PFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTA 546 PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTA Sbjct: 456 PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA 515 Query: 547 RLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMS 663 RLGSRKWAPRFDYILTQQA V VD A IN+DLISNF S Sbjct: 516 RLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFS 554
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 67.8 bits (164), Expect = 3e-11 Identities = 32/62 (51%), Positives = 43/62 (69%) Frame = +1 Query: 394 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 573 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W P Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTP 335 Query: 574 RF 579 +F Sbjct: 336 KF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 62.4 bits (150), Expect = 1e-09 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = +1 Query: 394 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 573 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W P Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTP 336 Query: 574 RF 579 RF Sbjct: 337 RF 338 Score = 34.7 bits (78), Expect = 0.26 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = +1 Query: 175 ILYECYEDVASGSEIRSVVLAG-----RRFYDKEGLPAFPMGKIDQTRMWKVGEKVRSTR 339 +L E Y++V +G+E + + R YDKE + +I +WK GE VRS R Sbjct: 345 VLNELYDNVENGNEAKRSLEYNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLR 398 Query: 340 PD 345 P+ Sbjct: 399 PE 400
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 61.6 bits (148), Expect = 2e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = +1 Query: 394 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 573 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W P Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYP 329 Query: 574 RF 579 F Sbjct: 330 IF 331 Score = 30.4 bits (67), Expect = 5.0 Identities = 24/113 (21%), Positives = 43/113 (38%) Frame = +1 Query: 7 GMDEESAYKSTVEXXXXXXXXXXXXXXMLEVYNSLSAEGKKEFNKAYSASFYPCMDILYE 186 G A+ TVE M +Y++ S ++ Y + + Sbjct: 282 GHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQD 341 Query: 187 CYEDVASGSEIRSVVLAGRRFYDKEGLPAFPMGKIDQTRMWKVGEKVRSTRPD 345 YE +G+E + + + +E L + I +WKVG++VR RP+ Sbjct: 342 LYESTKNGTETKRSLEFNSQPDYREKLEK-ELDTIRNMEIWKVGKEVRKLRPE 393
>ILV5_POPEU (P84534) Ketol-acid reductoisomerase, chloroplast (EC 1.1.1.86)| (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Fragment) Length = 14 Score = 33.5 bits (75), Expect = 0.59 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +1 Query: 247 FYDKEGLPAFPMGK 288 FY+KEGLPAFPMGK Sbjct: 1 FYEKEGLPAFPMGK 14
>FOXJ2_HUMAN (Q9P0K8) Forkhead box protein J2 (Fork head homologous X)| Length = 574 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Frame = -2 Query: 355 QGHHLAGSSAPFRRPSTCEFGRFCP*GKQEGL------PCHKTSDQPTQHSGFHFQRQHL 194 QG G + P PST G P GKQ G P P QH G+H + H Sbjct: 325 QGPSAVGGAPPLHTPSTD--GCTPPGGKQAGAEGYGPPPVMAMHPPPLQHGGYHPHQHHP 382 Query: 193 HS 188 HS Sbjct: 383 HS 384
>NFRB_ECOLI (P0AFA5) Bacteriophage N4 adsorption protein B| Length = 745 Score = 31.6 bits (70), Expect = 2.2 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = -3 Query: 471 LDHAL---VDDLRVGVTLLPQHLDLGHHKCNVNSSREGVEWAKVTIWPGRAHLFADLPHA 301 LD AL V+ LR+G ++L Q L + + GV W + W + L A++P + Sbjct: 505 LDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPAS 564 Query: 300 SLVDFA 283 + +A Sbjct: 565 VALHYA 570
>NFRB_ECO57 (P0AFA6) Bacteriophage N4 adsorption protein B| Length = 745 Score = 31.6 bits (70), Expect = 2.2 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = -3 Query: 471 LDHAL---VDDLRVGVTLLPQHLDLGHHKCNVNSSREGVEWAKVTIWPGRAHLFADLPHA 301 LD AL V+ LR+G ++L Q L + + GV W + W + L A++P + Sbjct: 505 LDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPAS 564 Query: 300 SLVDFA 283 + +A Sbjct: 565 VALHYA 570
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 31.2 bits (69), Expect = 2.9 Identities = 33/128 (25%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Frame = +2 Query: 5 GEWMRSRHTKALLRASLESSQRPSQRRGCLRYTTP*ARKAKRSSTRHTVHHFTLAWTSST 184 G RSRH + LL S + SQ R C P A F L Sbjct: 923 GAQSRSRHCEELLPGSSACAGNSSQSRPCPYSEIPVILPASSMEEATGCAGFNLIHL--- 979 Query: 185 NAMKMLPLEVKSGVLCWLVGGFMTRKAFLLSLWAKSTKLACGRSAKRCARPGQMVTLAH- 361 V +G+ C+L G +T +L S + C R Q TL H Sbjct: 980 ---------VATGISCFLGSGLLTLAVYL--------------SCQHCQRQSQESTLVHP 1016 Query: 362 STPSRLEF 385 +TP+ L + Sbjct: 1017 ATPNHLHY 1024
>HOY1_YARLI (Q99160) Homeobox protein HOY1| Length = 509 Score = 30.0 bits (66), Expect = 6.5 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Frame = -3 Query: 471 LDHALVDDLRVGVTLLPQHLDLGHHKCNVNSSRE-----GVEWAKVTIWPGRAHLFADLP 307 +D VDD+ + ++ +D+ HH+ +V+SS + G + I HL A P Sbjct: 94 VDDVSVDDVSMTADVINSPVDVIHHRTDVSSSADMLHHFGADLVTTPIQTHFNHLLATPP 153 Query: 306 HASLVDFAHRESRKAFLVIKPPTSQHNTPDFT 211 +S A + T H TP+ T Sbjct: 154 TSSSSSHVTTVDSPASSITDFSTLGHMTPNLT 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,317,476 Number of Sequences: 219361 Number of extensions: 2309743 Number of successful extensions: 6756 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6754 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
