ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21o11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 214 2e-52
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 214 2e-52
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 214 2e-52
4ref|NM_125181.3| Arabidopsis thaliana GTP binding AT5G57960 mRNA... 86 1e-13
5gb|AY052351.1| Arabidopsis thaliana AT5g57960/MTI20_22 mRNA sequ... 86 1e-13
6dbj|AB013396.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 86 1e-13
7emb|BX830800.1|CNS0A28V Arabidopsis thaliana Full-length cDNA Co... 72 2e-09
8gb|BT013605.1| Lycopersicon esculentum clone 132373F, mRNA sequence 68 3e-08
9emb|AL954146.8| Zebrafish DNA sequence from clone CH211-213I6 in... 44 0.49
10gb|AE017142.1| Yersinia pestis biovar Medievalis str. 91001 sect... 42 1.9
11gb|AY545599.3| Yersinia pseudotuberculosis putative tc locus, co... 42 1.9
12gb|AE009952.1| Yersinia pestis KIM, complete genome 42 1.9
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
14gb|AC110164.26| Mus musculus chromosome 3, clone RP23-167C5, com... 42 1.9
15ref|XM_447931.1| Candida glabrata CBS138, CAGL0J05214g partial mRNA 42 1.9
16emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp... 42 1.9
17emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 42 1.9
18emb|AJ414158.1| Yersinia pestis strain CO92 complete genome; seg... 42 1.9
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
21gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
22dbj|AK065442.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
23emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on ch... 42 1.9
24dbj|AP006700.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.9
25dbj|AP006688.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.9
26dbj|AP006686.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.9
27dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.9
28ref|XM_426111.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 7.6
29gb|BT014198.1| Lycopersicon esculentum clone 133375R, mRNA sequence 40 7.6
30emb|CR846087.30| Zebrafish DNA sequence from clone DKEY-196N19 i... 40 7.6
31gb|AF067622.1| Caenorhabditis elegans cosmid F33E11, complete se... 40 7.6
32emb|CR790365.7| Zebrafish DNA sequence from clone DKEY-179K24 in... 40 7.6
33emb|AL935035.6| Zebrafish DNA sequence from clone CH211-180B22 i... 40 7.6
34emb|CR450827.5| Zebrafish DNA sequence from clone CH211-112G6 in... 40 7.6
35emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 i... 40 7.6
36gb|AC048387.16| Homo sapiens chromosome 8, clone RP11-465K16, co... 40 7.6
37emb|BX511219.7| Zebrafish DNA sequence from clone DKEYP-93A3, co... 40 7.6
38emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in... 40 7.6
39emb|BX322637.7| Zebrafish DNA sequence from clone DKEY-22A1 in l... 40 7.6
40gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, co... 40 7.6
41dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.6
42emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in... 40 7.6
43emb|CR855327.11| Zebrafish DNA sequence from clone DKEY-84C11 in... 40 7.6
44emb|AL627235.12| Mouse DNA sequence from clone RP23-324C12 on ch... 40 7.6 
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score =  214 bits (108), Expect = 2e-52
 Identities = 132/140 (94%)
 Strand = Plus / Plus

                                                                         
Query: 211   aggtcaccttggcacaaatggaatatcaacttcctaggttgacaaagctgtggactcacc 270
             ||||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||| |
Sbjct: 56207 aggtcactttggcacaaatggaatatcaacttccaaggttgacaaagatgtggagtcatc 56266

                                                                         
Query: 271   ttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaattgaagttgaca 330
             |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 56267 ttgaacgacagtcaggaggtcaagtcaagggtatgggtgagaaacaaattgaagttgaca 56326

                                 
Query: 331   agcgcatcttgagaacacaa 350
             ||||||||||||||||||||
Sbjct: 56327 agcgcatcttgagaacacaa 56346



 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                         
Query: 103   tgcgtaacttggataagtcctttggaggaggtgttcgagtttgtgaccggactgctctta 162
             ||||||||||||| ||||| ||||| || || |||||||| |||||| ||||||||||||
Sbjct: 55346 tgcgtaacttggagaagtcatttggtgggggcgttcgagtctgtgacaggactgctctta 55405

                                                                 
Query: 163   ttctggacatttttaatcaaagggcagcgacacatgaagctgctctgcaggt 214
             |||||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 55406 ttctggacatatttaaccaaagggctgcaacacatgaagctgctctacaggt 55457



 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                         
Query: 419   ggtagcagcatttagagcaacactagaggagatatcagaatcatcaattattgttcatct 478
             |||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||
Sbjct: 57665 ggtagcagcatttagagcaacattggaggagatatcagaatcatcagttatagttcatct 57724

                         
Query: 479   tgtagatatcag 490
             ||||||||||||
Sbjct: 57725 tgtagatatcag 57736



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                         
Query: 3     acttatattggttnagggaaggttgctgaaattaggagtgcagttcaggcccttgatgct 62
             ||||||||||||| ||| || ||||||||||| | ||| ||| |||| |||| ||||| |
Sbjct: 55135 acttatattggttcaggcaaagttgctgaaatcaagagcgcaattcatgcccatgatgtt 55194

                                          
Query: 63    gagactataattttcgatgatgagttgtc 91
             |||||| | ||||||||||||||||||||
Sbjct: 55195 gagactgtgattttcgatgatgagttgtc 55223



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 488   cagccatcaattagctcaacaacagataggtgctgttgacaaagtactgaaagagctgga 547
             ||||||||  ||||||||||| ||||||| |||||||||||||||  |||| ||| ||||
Sbjct: 57835 cagccatccgttagctcaacagcagatagatgctgttgacaaagtgttgaaggagttgga 57894

                   
Query: 548   tataga 553
             ||||||
Sbjct: 57895 tataga 57900



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                         
Query: 363   actgagttcctcctaacagatactgttgggttcattcagaagctacccactatgctggta 422
             ||||| ||||||||||||||||||||||| |||||||| ||  |||| |||||| |||||
Sbjct: 57429 actgaattcctcctaacagatactgttggattcattcaaaaattacctactatgttggta 57488
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  214 bits (108), Expect = 2e-52
 Identities = 132/140 (94%)
 Strand = Plus / Plus

                                                                            
Query: 211      aggtcaccttggcacaaatggaatatcaacttcctaggttgacaaagctgtggactcacc 270
                ||||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||| |
Sbjct: 21704154 aggtcactttggcacaaatggaatatcaacttccaaggttgacaaagatgtggagtcatc 21704213

                                                                            
Query: 271      ttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaattgaagttgaca 330
                |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21704214 ttgaacgacagtcaggaggtcaagtcaagggtatgggtgagaaacaaattgaagttgaca 21704273

                                    
Query: 331      agcgcatcttgagaacacaa 350
                ||||||||||||||||||||
Sbjct: 21704274 agcgcatcttgagaacacaa 21704293



 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                            
Query: 103      tgcgtaacttggataagtcctttggaggaggtgttcgagtttgtgaccggactgctctta 162
                ||||||||||||| ||||| ||||| || || |||||||| |||||| ||||||||||||
Sbjct: 21703293 tgcgtaacttggagaagtcatttggtgggggcgttcgagtctgtgacaggactgctctta 21703352

                                                                    
Query: 163      ttctggacatttttaatcaaagggcagcgacacatgaagctgctctgcaggt 214
                |||||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 21703353 ttctggacatatttaaccaaagggctgcaacacatgaagctgctctacaggt 21703404



 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                            
Query: 419      ggtagcagcatttagagcaacactagaggagatatcagaatcatcaattattgttcatct 478
                |||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||
Sbjct: 21705612 ggtagcagcatttagagcaacattggaggagatatcagaatcatcagttatagttcatct 21705671

                            
Query: 479      tgtagatatcag 490
                ||||||||||||
Sbjct: 21705672 tgtagatatcag 21705683



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                            
Query: 3        acttatattggttnagggaaggttgctgaaattaggagtgcagttcaggcccttgatgct 62
                ||||||||||||| ||| || ||||||||||| | ||| ||| |||| |||| ||||| |
Sbjct: 21703082 acttatattggttcaggcaaagttgctgaaatcaagagcgcaattcatgcccatgatgtt 21703141

                                             
Query: 63       gagactataattttcgatgatgagttgtc 91
                |||||| | ||||||||||||||||||||
Sbjct: 21703142 gagactgtgattttcgatgatgagttgtc 21703170



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 488      cagccatcaattagctcaacaacagataggtgctgttgacaaagtactgaaagagctgga 547
                ||||||||  ||||||||||| ||||||| |||||||||||||||  |||| ||| ||||
Sbjct: 21705782 cagccatccgttagctcaacagcagatagatgctgttgacaaagtgttgaaggagttgga 21705841

                      
Query: 548      tataga 553
                ||||||
Sbjct: 21705842 tataga 21705847



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 363      actgagttcctcctaacagatactgttgggttcattcagaagctacccactatgctggta 422
                ||||| ||||||||||||||||||||||| |||||||| ||  |||| |||||| |||||
Sbjct: 21705376 actgaattcctcctaacagatactgttggattcattcaaaaattacctactatgttggta 21705435
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  214 bits (108), Expect = 2e-52
 Identities = 132/140 (94%)
 Strand = Plus / Plus

                                                                            
Query: 211      aggtcaccttggcacaaatggaatatcaacttcctaggttgacaaagctgtggactcacc 270
                ||||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||| |
Sbjct: 22014353 aggtcactttggcacaaatggaatatcaacttccaaggttgacaaagatgtggagtcatc 22014412

                                                                            
Query: 271      ttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaattgaagttgaca 330
                |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 22014413 ttgaacgacagtcaggaggtcaagtcaagggtatgggtgagaaacaaattgaagttgaca 22014472

                                    
Query: 331      agcgcatcttgagaacacaa 350
                ||||||||||||||||||||
Sbjct: 22014473 agcgcatcttgagaacacaa 22014492



 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                            
Query: 103      tgcgtaacttggataagtcctttggaggaggtgttcgagtttgtgaccggactgctctta 162
                ||||||||||||| ||||| ||||| || || |||||||| |||||| ||||||||||||
Sbjct: 22013492 tgcgtaacttggagaagtcatttggtgggggcgttcgagtctgtgacaggactgctctta 22013551

                                                                    
Query: 163      ttctggacatttttaatcaaagggcagcgacacatgaagctgctctgcaggt 214
                |||||||||| ||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 22013552 ttctggacatatttaaccaaagggctgcaacacatgaagctgctctacaggt 22013603



 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                            
Query: 419      ggtagcagcatttagagcaacactagaggagatatcagaatcatcaattattgttcatct 478
                |||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||
Sbjct: 22015811 ggtagcagcatttagagcaacattggaggagatatcagaatcatcagttatagttcatct 22015870

                            
Query: 479      tgtagatatcag 490
                ||||||||||||
Sbjct: 22015871 tgtagatatcag 22015882



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                            
Query: 3        acttatattggttnagggaaggttgctgaaattaggagtgcagttcaggcccttgatgct 62
                ||||||||||||| ||| || ||||||||||| | ||| ||| |||| |||| ||||| |
Sbjct: 22013281 acttatattggttcaggcaaagttgctgaaatcaagagcgcaattcatgcccatgatgtt 22013340

                                             
Query: 63       gagactataattttcgatgatgagttgtc 91
                |||||| | ||||||||||||||||||||
Sbjct: 22013341 gagactgtgattttcgatgatgagttgtc 22013369



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 488      cagccatcaattagctcaacaacagataggtgctgttgacaaagtactgaaagagctgga 547
                ||||||||  ||||||||||| ||||||| |||||||||||||||  |||| ||| ||||
Sbjct: 22015981 cagccatccgttagctcaacagcagatagatgctgttgacaaagtgttgaaggagttgga 22016040

                      
Query: 548      tataga 553
                ||||||
Sbjct: 22016041 tataga 22016046



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 363      actgagttcctcctaacagatactgttgggttcattcagaagctacccactatgctggta 422
                ||||| ||||||||||||||||||||||| |||||||| ||  |||| |||||| |||||
Sbjct: 22015575 actgaattcctcctaacagatactgttggattcattcaaaaattacctactatgttggta 22015634
to top
>ref|NM_125181.3| Arabidopsis thaliana GTP binding AT5G57960 mRNA, complete cds
          Length = 1977

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 259 tgtggactcaccttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaa 318
           |||||||||| |||||||| || || || |||||||| ||||||||||| || |||||||
Sbjct: 774 tgtggactcatcttgagcgtcaatctggtggccaagttaagggtatgggagaaaaacaaa 833

                                  
Query: 319 ttgaagttgacaagcgcatcttg 341
           |||||||||| ||||| ||||||
Sbjct: 834 ttgaagttgataagcgaatcttg 856



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 103 tgcgtaacttggataagtcctttggaggaggtgttcgagtttgtgaccggactgctctta 162
           |||||||| |||| ||| ||||||| || | |||||||||||||||||| || || ||||
Sbjct: 618 tgcgtaacctggaaaaggcctttggtggggatgttcgagtttgtgaccgcaccgccctta 677

                                                   
Query: 163 ttctggacatttttaatcaaagggcagcgacacatgaagc 202
           |  |||||||||| || |||||||| || || ||||||||
Sbjct: 678 tcttggacattttcaaccaaagggccgcaactcatgaagc 717
to top
>gb|AY052351.1| Arabidopsis thaliana AT5g57960/MTI20_22 mRNA sequence
          Length = 2253

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 259 tgtggactcaccttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaa 318
           |||||||||| |||||||| || || || |||||||| ||||||||||| || |||||||
Sbjct: 802 tgtggactcatcttgagcgtcaatctggtggccaagttaagggtatgggagaaaaacaaa 861

                                  
Query: 319 ttgaagttgacaagcgcatcttg 341
           |||||||||| ||||| ||||||
Sbjct: 862 ttgaagttgataagcgaatcttg 884



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 103 tgcgtaacttggataagtcctttggaggaggtgttcgagtttgtgaccggactgctctta 162
           |||||||| |||| ||| ||||||| || | |||||||||||||||||| || || ||||
Sbjct: 646 tgcgtaacctggaaaaggcctttggtggggatgttcgagtttgtgaccgcaccgccctta 705

                                                   
Query: 163 ttctggacatttttaatcaaagggcagcgacacatgaagc 202
           |  |||||||||| || |||||||| || || ||||||||
Sbjct: 706 tcttggacattttcaaccaaagggccgcaactcatgaagc 745
to top
>dbj|AB013396.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTI20
          Length = 79676

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 259   tgtggactcaccttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaa 318
             |||||||||| |||||||| || || || |||||||| ||||||||||| || |||||||
Sbjct: 61768 tgtggactcatcttgagcgtcaatctggtggccaagttaagggtatgggagaaaaacaaa 61709

                                    
Query: 319   ttgaagttgacaagcgcatcttg 341
             |||||||||| ||||| ||||||
Sbjct: 61708 ttgaagttgataagcgaatcttg 61686



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                         
Query: 103   tgcgtaacttggataagtcctttggaggaggtgttcgagtttgtgaccggactgctctta 162
             |||||||| |||| ||| ||||||| || | |||||||||||||||||| || || ||||
Sbjct: 62017 tgcgtaacctggaaaaggcctttggtggggatgttcgagtttgtgaccgcaccgccctta 61958

                                                     
Query: 163   ttctggacatttttaatcaaagggcagcgacacatgaagc 202
             |  |||||||||| || |||||||| || || ||||||||
Sbjct: 61957 tcttggacattttcaaccaaagggccgcaactcatgaagc 61918
to top
>emb|BX830800.1|CNS0A28V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS24ZG08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1962

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 103 tgcgtaacttggataagtcctttggaggaggtgttcgagtttgtgaccggactgctctta 162
           |||||||| |||| ||| ||||||| || | |||||||||||||||||| || || ||||
Sbjct: 618 tgcgtaacctggaaaaggcctttggtggggatgttcgagtttgtgaccgcaccgccctta 677

                                                   
Query: 163 ttctggacatttttaatcaaagggcagcgacacatgaagc 202
           |  |||||||||| || |||||||| || || ||||||||
Sbjct: 678 tcttggacattttcaaccaaagggccgcaactcatgaagc 717



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 66/76 (86%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                       
Query: 259 tgtggactcaccttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaa 318
           |||||||||| |||||||| || || || |||||||| ||||||||||| ||| ||||||
Sbjct: 774 tgtggactcatcttgagcgtcaatctggtggccaagttaagggtatgggagag-aacaaa 832

                           
Query: 319 ttgaagttgacaagcg 334
            ||||||||| |||||
Sbjct: 833 -tgaagttgataagcg 847
to top
>gb|BT013605.1| Lycopersicon esculentum clone 132373F, mRNA sequence
          Length = 2186

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 259 tgtggactcaccttgagcggcagtcaggaggccaagtcaagggtatgggtgagaaacaaa 318
           ||||||||||||||||||| ||  | ||||| || ||||||||||||||||| ||||| |
Sbjct: 824 tgtggactcaccttgagcgtcaagctggagggcaggtcaagggtatgggtgaaaaacaga 883

                         
Query: 319 ttgaagttgacaag 332
           | ||||| ||||||
Sbjct: 884 tcgaagtagacaag 897



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                        
Query: 366  gagttcctcctaacagatactgttgggttcattcagaagctacccactatgctggtagca 425
            |||||||| || |||||||||||||| ||||| || ||  |||| || |  ||||| |||
Sbjct: 1141 gagttcctgcttacagatactgttggcttcatccaaaaattaccgacaactctggttgca 1200

                             
Query: 426  gcatttagagcaacact 442
            || ||||| ||||||||
Sbjct: 1201 gcctttagggcaacact 1217
to top
>emb|AL954146.8| Zebrafish DNA sequence from clone CH211-213I6 in linkage group 17,
              complete sequence
          Length = 207669

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 336    atcttgagaacacaaatgaaga 357
              ||||||||||||||||||||||
Sbjct: 176516 atcttgagaacacaaatgaaga 176495
to top
>gb|AE017142.1| Yersinia pestis biovar Medievalis str. 91001 section 16 of 16 of the
             complete genome
          Length = 229338

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    gttcaggcccttgatgctgag 65
             |||||||||||||||||||||
Sbjct: 28648 gttcaggcccttgatgctgag 28628
to top
>gb|AY545599.3| Yersinia pseudotuberculosis putative tc locus, complete sequence
          Length = 11421

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   gttcaggcccttgatgctgag 65
            |||||||||||||||||||||
Sbjct: 5181 gttcaggcccttgatgctgag 5201
to top
>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 45     gttcaggcccttgatgctgag 65
              |||||||||||||||||||||
Sbjct: 192627 gttcaggcccttgatgctgag 192607
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 451     tatcagaatcatcaattattg 471
               |||||||||||||||||||||
Sbjct: 8072194 tatcagaatcatcaattattg 8072214
to top
>gb|AC110164.26| Mus musculus chromosome 3, clone RP23-167C5, complete sequence
          Length = 199235

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 514    taggtgctgttgacaaagtac 534
              |||||||||||||||||||||
Sbjct: 172123 taggtgctgttgacaaagtac 172143
to top
>ref|XM_447931.1| Candida glabrata CBS138, CAGL0J05214g partial mRNA
          Length = 2151

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 450  atatcagaatcatcaattatt 470
            |||||||||||||||||||||
Sbjct: 1190 atatcagaatcatcaattatt 1170
to top
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 450    atatcagaatcatcaattatt 470
              |||||||||||||||||||||
Sbjct: 500756 atatcagaatcatcaattatt 500776
to top
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 45      gttcaggcccttgatgctgag 65
               |||||||||||||||||||||
Sbjct: 4223770 gttcaggcccttgatgctgag 4223750
to top
>emb|AJ414158.1| Yersinia pestis strain CO92 complete genome; segment 18/20
          Length = 235050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    gttcaggcccttgatgctgag 65
             |||||||||||||||||||||
Sbjct: 94664 gttcaggcccttgatgctgag 94684
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 451     tatcagaatcatcaattattg 471
               |||||||||||||||||||||
Sbjct: 8070029 tatcagaatcatcaattattg 8070049
to top
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0019J12, complete sequence
          Length = 195583

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 451  tatcagaatcatcaattattg 471
            |||||||||||||||||||||
Sbjct: 3624 tatcagaatcatcaattattg 3644
to top
>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10,
              complete sequence
          Length = 143298

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 451    tatcagaatcatcaattattg 471
              |||||||||||||||||||||
Sbjct: 139557 tatcagaatcatcaattattg 139577
to top
>dbj|AK065442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013009J14, full
            insert sequence
          Length = 4128

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 451  tatcagaatcatcaattattg 471
            |||||||||||||||||||||
Sbjct: 2060 tatcagaatcatcaattattg 2040
to top
>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete
              sequence
          Length = 190466

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 80     tgatgagttgtctgctggacagctg 104
              |||||||||||| ||||||||||||
Sbjct: 143155 tgatgagttgtcagctggacagctg 143179
to top
>dbj|AP006700.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H09, TM0550,
             complete sequence
          Length = 76403

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 459   tcatcaattattgttcatctt 479
             |||||||||||||||||||||
Sbjct: 64335 tcatcaattattgttcatctt 64315
to top
>dbj|AP006688.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16L14, TM0383,
             complete sequence
          Length = 81488

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 459   tcatcaattattgttcatctt 479
             |||||||||||||||||||||
Sbjct: 28625 tcatcaattattgttcatctt 28645
to top
>dbj|AP006686.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18K09, TM0380,
             complete sequence
          Length = 88931

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 459   tcatcaattattgttcatctt 479
             |||||||||||||||||||||
Sbjct: 28286 tcatcaattattgttcatctt 28266
to top
>dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39H01, TM0172,
              complete sequence
          Length = 127731

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 459    tcatcaattattgttcatctt 479
              |||||||||||||||||||||
Sbjct: 119094 tcatcaattattgttcatctt 119114
to top
>ref|XM_426111.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 4632412N22 gene
            (LOC428555), mRNA
          Length = 2742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 79   atgatgagttgtctgctggacagc 102
            ||||||||||||||| ||||||||
Sbjct: 1805 atgatgagttgtctgatggacagc 1828
to top
>gb|BT014198.1| Lycopersicon esculentum clone 133375R, mRNA sequence
          Length = 1416

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 ttgagaacacaaatgaagag 358
           ||||||||||||||||||||
Sbjct: 27  ttgagaacacaaatgaagag 8
to top
>emb|CR846087.30| Zebrafish DNA sequence from clone DKEY-196N19 in linkage group 8,
              complete sequence
          Length = 232595

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    tagaggagatatcagaatca 461
              ||||||||||||||||||||
Sbjct: 108113 tagaggagatatcagaatca 108132
to top
>gb|AF067622.1| Caenorhabditis elegans cosmid F33E11, complete sequence
          Length = 36400

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  aagggtatgggtgagaaaca 316
            ||||||||||||||||||||
Sbjct: 3699 aagggtatgggtgagaaaca 3680
to top
>emb|CR790365.7| Zebrafish DNA sequence from clone DKEY-179K24 in linkage group 3,
              complete sequence
          Length = 161472

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    tagaggagatatcagaatca 461
              ||||||||||||||||||||
Sbjct: 140567 tagaggagatatcagaatca 140548
to top
>emb|AL935035.6| Zebrafish DNA sequence from clone CH211-180B22 in linkage group 20
             Contains the 5' end of the gene for a novel protein
             similar to vertebrate meningioma expressed antigen 6
             (coiled-coil proline-rich) (MGEA6), the gene for a novel
             protein similar to vertebrate melanoma inhibitory activity
             2 (MIA2), the gene for a novel protein similar to mouse
             and human TATA box binding protein (TBP)-associated factor
             RNA polymerase I A  48kDa  (TAF1A), the 3' end of the gene
             for a novel protein similar to vertebrate dual specificity
             phosphatase 10 (DUSP10) and four CpG islands, complete
             sequence
          Length = 151114

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   tagaggagatatcagaatca 461
             ||||||||||||||||||||
Sbjct: 14228 tagaggagatatcagaatca 14209
to top
>emb|CR450827.5| Zebrafish DNA sequence from clone CH211-112G6 in linkage group 13,
             complete sequence
          Length = 174505

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   tagaggagatatcagaatca 461
             ||||||||||||||||||||
Sbjct: 84863 tagaggagatatcagaatca 84882
to top
>emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 in linkage group 8,
              complete sequence
          Length = 184723

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    cagcatttagagcaacacta 443
              ||||||||||||||||||||
Sbjct: 155515 cagcatttagagcaacacta 155496
to top
>gb|AC048387.16| Homo sapiens chromosome 8, clone RP11-465K16, complete sequence
          Length = 193896

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ctgaaattaggagtgcagtt 47
             ||||||||||||||||||||
Sbjct: 34275 ctgaaattaggagtgcagtt 34256
to top
>emb|BX511219.7| Zebrafish DNA sequence from clone DKEYP-93A3, complete sequence
          Length = 201881

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 334  gcatcttgagaacacaaatgaaga 357
            ||||||| ||||||||||||||||
Sbjct: 9384 gcatctttagaacacaaatgaaga 9407
to top
>emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in linkage group 22,
              complete sequence
          Length = 203952

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 334    gcatcttgagaacacaaatgaaga 357
              ||||||| ||||||||||||||||
Sbjct: 200356 gcatctttagaacacaaatgaaga 200379
to top
>emb|BX322637.7| Zebrafish DNA sequence from clone DKEY-22A1 in linkage group 9, complete
              sequence
          Length = 178563

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    tagaggagatatcagaatca 461
              ||||||||||||||||||||
Sbjct: 171306 tagaggagatatcagaatca 171287
to top
>gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, complete sequence
          Length = 138532

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   gctctgcaggtcaccttggc 223
             ||||||||||||||||||||
Sbjct: 83061 gctctgcaggtcaccttggc 83042
to top
>dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-778O17, complete
             sequence
          Length = 157282

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   ttattctggacatttttaatcaaa 183
             ||||||||||||||||||| ||||
Sbjct: 31990 ttattctggacatttttaaacaaa 32013
to top
>emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in linkage group 4,
             complete sequence
          Length = 263674

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   tagaggagatatcagaatca 461
             ||||||||||||||||||||
Sbjct: 65314 tagaggagatatcagaatca 65333
to top
>emb|CR855327.11| Zebrafish DNA sequence from clone DKEY-84C11 in linkage group 1, complete
              sequence
          Length = 183806

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    tagaggagatatcagaatca 461
              ||||||||||||||||||||
Sbjct: 111071 tagaggagatatcagaatca 111052
to top
>emb|AL627235.12| Mouse DNA sequence from clone RP23-324C12 on chromosome 11, complete
             sequence
          Length = 118185

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   caacttcctaggttgacaaagctg 260
             ||||||||||||||||||| ||||
Sbjct: 50611 caacttcctaggttgacaaggctg 50634


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,910,451
Number of Sequences: 3902068
Number of extensions: 4910451
Number of successful extensions: 97467
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97229
Number of HSP's gapped (non-prelim): 238
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top