>NU2M_BRALA (O21001) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 346

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
 Frame = +1

Query: 265 AFTVLAYIGKLIFGIVGLIVSIAWVAHIIIYLLVDPPLSSFLNEI-------------FI 405
           AF+ ++++G L+ G V    S+  +++  +Y+++  PL S L+ +             F 
Sbjct: 180 AFSSISHLGWLVVGCVA--GSLLGLSYFTLYVILSIPLFSILHMLNGGHLNQLRTGLMFN 237

Query: 406 KLDSVWGLLGTAA---------FAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLM 558
            L SV  LLG            F FF  +LL+    G+++LG+ +V IT       GTL+
Sbjct: 238 PLMSV--LLGVGFLSLGGLPPFFGFFGKWLLLTHFVGQLLLGVSVVLIT-------GTLI 288

Query: 559 NSFLF 573
           + F +
Sbjct: 289 SLFYY 293

>NU2M_BRAFL (O47434) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 346

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
 Frame = +1

Query: 265 AFTVLAYIGKLIFGIVGLIVSIAWVAHIIIYLLVDPPLSSFLNEI-------------FI 405
           AF+ ++++G L+ G V    S+  +++  +Y+++  PL S L+ +             F 
Sbjct: 180 AFSSISHLGWLVVGCVA--GSLLGLSYFTLYVVLSIPLFSILHMLNGGHLNQLRTGLMFN 237

Query: 406 KLDSVWGLLGTAA---------FAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLM 558
            L SV  LLG            F FF  +LL+    G+++LG+ +V IT       GTL+
Sbjct: 238 PLMSV--LLGVGFLSLGGLPPFFGFFGKWLLLTHFVGQLLLGVSVVLIT-------GTLI 288

Query: 559 NSFLF 573
           + F +
Sbjct: 289 SLFYY 293

>Y1644_METJA (Q59038) Hypothetical protein MJ1644|
          Length = 177

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 30/123 (24%), Positives = 59/123 (47%)
 Frame = +1

Query: 244 EKAEATWAFTVLAYIGKLIFGIVGLIVSIAWVAHIIIYLLVDPPLSSFLNEIFIKLDSVW 423
           E  EA +   + A +  + + + G++     +A  ++ LL    +S   N+  +    ++
Sbjct: 5   ELKEAKYLGGIGAVLNLVSYAVGGILA----IAGYVLILLALNKISKIFNDDEVFKKYLY 60

Query: 424 GLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSI 603
           G++            +IAV+     +G+  V ++  P+ +G T M+SFL  VG+IL   +
Sbjct: 61  GVV----------LWIIAVLIVIFAVGISFVSLSFIPLDYGLTAMSSFL--VGVILFYIL 108

Query: 604 SVI 612
           SVI
Sbjct: 109 SVI 111

>LMBR1_CHICK (Q7ZUA6) Limb region 1 protein homolog|
          Length = 488

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
 Frame = +1

Query: 277 LAYIGKLIFGIVGLIVSIAWVAHIIIYLLVDP---PLSSFLNEIFIKLDSVWGLLGTAAF 447
           L Y   +I  ++   +S+  VA  I+YLLVD    P  S    I     S +G +G A  
Sbjct: 291 LVYPAVMILLLIETSISVLLVAFNILYLLVDETAMPKGSGGPGIGNASLSTFGFVGAALE 350

Query: 448 AFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCS 600
               FYL+++ + G   L     FI   P K   T M   + N   IL+ S
Sbjct: 351 IILIFYLMVSSVVGFYSLRFFENFI---PRK-DDTTMTKIIGNCVSILVLS 397

>Y902_METJA (Q58312) Hypothetical protein MJ0902|
          Length = 238

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +1

Query: 274 VLAYIGKLIFGIVGL----IVSIAWVAHIIIYLLVDPPLSSFLNEIFIKLDSVWGLLGTA 441
           ++  IG LI  I  L    I    WV+ +I  L+ +  LS   +++   + S+ G +   
Sbjct: 9   IVGAIGLLIASIYDLKSREIEDYVWVSMVIFGLIYNGYLSFISHDMLYVIQSIVGFIVCF 68

Query: 442 AFAFFCFYLLIAVIAGEMMLGL 507
              FF F L +    G++++GL
Sbjct: 69  FLGFFMFLLGVGGGDGKLIMGL 90

>SP17_MOUSE (Q62252) Sperm surface protein Sp17 (Sperm autoantigenic protein|
           17)
          Length = 149

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -1

Query: 579 DIKQERIHQSSSPFHWVNGDEN*FQAKHHFPSNDCDEEIETEECKSSSPKQTPNTVQLYE 400
           ++ ++R   S  P  W    E+ F   H F   +  E+ E E  KSS  ++TP  V  +E
Sbjct: 45  NLLEKREKTSFDPAEWGAKVEDRFYNNHAFKEQEQVEKCEQELAKSSGREETP--VTPFE 102

Query: 399 DLIQERR 379
           +  +E R
Sbjct: 103 ESTEEER 109

>YM68_YEAST (Q04991) Hypothetical transporter YMR221C|
          Length = 504

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = +1

Query: 244 EKAEATWAFTVLAYIGKLIFGIVGLIVSIAWVAHIIIYLLVDPPLSSFLNEIFIKLDSVW 423
           E+ ++ W + +L +    +  ++ +   IA V     YLL DP L+  LN IF   D + 
Sbjct: 297 EQIKSPWFYLMLLFA---LVAMLRINYFIATVRTQEEYLLNDPDLALKLNSIF---DMLL 350

Query: 424 GLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFN-VGLILL 594
            L G  +  F    + + +   + +  L ++F T   +   G + NSF +N +G++LL
Sbjct: 351 PLGGAVSIPF----IGLLLDHTDTLSTLTILFTTSTAIGVFGLIPNSFTWNLIGIVLL 404

>CYB_CANST (Q6ED58) Cytochrome b|
          Length = 384

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 26/115 (22%), Positives = 48/115 (41%)
 Frame = +1

Query: 268 FTVLAYIGKLIFGIVGLIVSIAWVAHIIIYLLVDPPLSSFLNEIFIKLDSVWGLLGTAAF 447
           + +L  I   I G++ ++ +I     +I+++L     S      F  L  +        F
Sbjct: 279 YAILRAISSKIIGVLAMLFAI-----LILFVLPFVDFSIIRGNAFKFLSKI-------LF 326

Query: 448 AFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVI 612
            FFC   ++  + G M + +  + I        G L   F F+  +ILL  IS++
Sbjct: 327 GFFCVNFILLGLIGAMHIEVPYIII--------GQLATIFYFSYFIILLPLISIL 373

>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 572

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
 Frame = +1

Query: 256 ATWAFTVLAYIGKLIFGIVGLIVS-------IAWVAHIIIYLLVDPPLSSFLNEIFIKLD 414
           ++++F   +Y   + FG++GL++        ++W+   + YL+V P    FL  + I L 
Sbjct: 406 SSYSFNDSSYF--ISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPWYLKFLTLLTIILG 463

Query: 415 SVWG-LLGTAAFAFFCF---YLLIAVIAGEM--MLGLKLVFITIHPMKWGGTLMNSF 567
           S +G ++    +++  F   +L   +  G M  M  L   +++  P+ +G   + SF
Sbjct: 464 SYFGYVISDFVYSYELFSLNFLSFVMFTGSMWFMPFLSTNYVSYLPLSFGYYSLKSF 520


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,384,184
Number of Sequences: 219361
Number of extensions: 1868304
Number of successful extensions: 4766
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4766
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)