Clone Information

BLAST Search Result

Clone Name	bags22d05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|U54767.1\|HVU54767 Hordeum vulgare caffeic acid O-methyltransf...	1013	0.0
2	gb\|U43498.1\|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p...	472	e-130
3	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
4	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	68	4e-08
5	emb\|AL713947.3\|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003...	68	4e-08
6	emb\|AL845348.4\|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb...	58	3e-05
7	emb\|BX664711.2\|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E...	58	3e-05
8	gb\|AY518220.1\| Oryza sativa (indica cultivar-group) NBS-LRR-like...	44	0.52
9	emb\|AL162426.20\| Human DNA sequence from clone RP11-56D16 on chr...	44	0.52
10	ref\|XM_474640.1\| Oryza sativa (japonica cultivar-group), predic...	42	2.1
11	gb\|AC116778.9\| Mus musculus chromosome 1, clone RP24-481H3, comp...	42	2.1
12	emb\|AL731589.3\|OSJN00239 Oryza sativa genomic DNA, chromosome 4,...	42	2.1
13	ref\|NM_170325.1\| Drosophila melanogaster CG31064-RA, transcript ...	42	2.1
14	ref\|NM_143288.2\| Drosophila melanogaster CG31064-RE, transcript ...	42	2.1
15	gb\|AY051617.1\| Drosophila melanogaster GH26613 full length cDNA	42	2.1
16	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
17	gb\|AC009848.9\|AC009848 Drosophila melanogaster, chromosome 3R, r...	42	2.1
18	dbj\|AK098998.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
19	dbj\|AK072016.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
20	gb\|AE003759.3\| Drosophila melanogaster chromosome 3R, section 97...	42	2.1
21	ref\|NM_001031361.1\| Gallus gallus gasdermin 1 (GSDM1), mRNA	40	8.2
22	ref\|XM_418085.1\| PREDICTED: Gallus gallus similar to Myosin Id (...	40	8.2
23	ref\|XM_745088.1\| Aspergillus fumigatus Af293 hypothetical protei...	40	8.2
24	gb\|AY427607.1\| Mus musculus map chrx_207.1 peptidylprolyl isomer...	40	8.2
25	gb\|AC146480.2\| Danio rerio clone CH211-40O9, complete sequence	40	8.2
26	ref\|NG_005274.1\| Mus musculus peptidylprolyl isomerase A pseudog...	40	8.2
27	emb\|AL160400.20\| Human DNA sequence from clone RP11-367G6 on chr...	40	8.2
28	gb\|AC164010.2\| Mus musculus chromosome 18, clone RP24-391C15, co...	40	8.2
29	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	40	8.2
30	emb\|AL646047.9\| Mouse DNA sequence from clone RP23-69P8 on chrom...	40	8.2
31	emb\|AJ721093.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	8.2
32	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	8.2
33	emb\|BX323587.5\| Zebrafish DNA sequence from clone CH211-100L3, c...	40	8.2
34	emb\|BX569781.7\| Zebrafish DNA sequence from clone DKEY-72L18 in ...	40	8.2
35	gb\|AC109243.10\| Mus musculus chromosome 18, clone RP23-139O19, c...	40	8.2
36	ref\|NR_000030.1\| Homo sapiens peptidylprolyl isomerase A process...	40	8.2
37	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
38	gb\|AC005805.12\| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Canc...	40	8.2
39	gb\|AC024261.6\|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D...	40	8.2
40	gb\|AE004715.1\| Pseudomonas aeruginosa PAO1, section 276 of 529 o...	40	8.2
41	dbj\|AP004739.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
42	emb\|AL929558.13\| Zebrafish DNA sequence from clone CH211-159N7, ...	40	8.2
43	emb\|BX548010.5\| Mouse DNA sequence from clone RP23-22P24 on chro...	40	8.2
44	emb\|AJ328716.1\|HSA328716 Homo sapiens genomic sequence surroundi...	40	8.2
45	emb\|BX005011.6\| Zebrafish DNA sequence from clone CH211-59F19 in...	40	8.2
46	gb\|AY560116.1\| Feline calicivirus isolate UTCVM-H1, complete genome	40	8.2
47	gb\|AC169084.3\| Mus musculus BAC clone RP24-427O13 from chromosom...	40	8.2

>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score = 1013 bits (511), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2    ctataataaataattctgttctagtagtccaggatctattgaattgtgagaggtagccat 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2632 ctataataaataattctgttctagtagtccaggatctattgaattgtgagaggtagccat 2691

                                                                        
Query: 62   ggacaagatttcagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccgg 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2692 ggacaagatttcagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccgg 2751

                                                                        
Query: 122  agtggatgaggacgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacat 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2752 agtggatgaggacgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacat 2811

                                                                        
Query: 182  ctccatggtgctcagagcagccatccagctgggcctcctagacgcactcagtgcggctgg 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2812 ctccatggtgctcagagcagccatccagctgggcctcctagacgcactcagtgcggctgg 2871

                                                                        
Query: 242  tggcaaggcgctgacccccaacgagctcgtagagaacgtggagacaagcagcaacaaggc 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2872 tggcaaggcgctgacccccaacgagctcgtagagaacgtggagacaagcagcaacaaggc 2931

                                                                        
Query: 302  cgaggcggcggctgcggtggaccgtatcctcaggtacctctcctgcttcaacgtggtgac 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2932 cgaggcggcggctgcggtggaccgtatcctcaggtacctctcctgcttcaacgtggtgac 2991

                                                                        
Query: 362  ctgctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggccc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2992 ctgctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggccc 3051

                                                                        
Query: 422  cttgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctt 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3052 cttgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctt 3111

                                           
Query: 482  tgtggtcgaccccgaccacttattcccctgg 512
            |||||||||||||||||||||||||||||||
Sbjct: 3112 tgtggtcgaccccgaccacttattcccctgg 3142



 Score =  180 bits (91), Expect = 3e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                        
Query: 511  ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3335 ggcaccatatagcagaggcggtgactgcgggcgggccgtcggcgtttgagaggacgcaaa 3394

                                           
Query: 571  agtggccctactacgagtacatggggaagaa 601
            |||||||||||||||||||||||||||||||
Sbjct: 3395 agtggccctactacgagtacatggggaagaa 3425

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>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score =  472 bits (238), Expect = e-130
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 364 gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gctcttcggaggcagcaggccctgacggcacacttgtgcggcgatacacgaccggcccct 60

                                                                       
Query: 424 tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtgccggtggctcaccaaagacagaggggacggcaccctgtccccctttgccgtctttg 120

                                                                       
Query: 484 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtcgaccccgaccacttattcccctggcaccatatagcagaggcggtgactgcgggcg 180

                                                                     
Query: 544 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaa 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggccgtcggcgtttgagaggacgcaaaagtggccctactacgagtacatggggaagaa 238

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 153     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 212
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171173 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171232

                             
Query: 213     ggcctcctagacgc 226
               |||||||| |||||
Sbjct: 5171233 ggcctcctcgacgc 5171246



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                           
Query: 153     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 212
               |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 5363496 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363555

                                                            
Query: 213     ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 257
               || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 5363556 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363600



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 578     ctactacgagtacatggggaagaa 601
               ||||| ||||||||||||||||||
Sbjct: 5364107 ctacttcgagtacatggggaagaa 5364130

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 153     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 212
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171155 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171214

                             
Query: 213     ggcctcctagacgc 226
               |||||||| |||||
Sbjct: 5171215 ggcctcctcgacgc 5171228



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                           
Query: 153     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 212
               |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 5363485 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 5363544

                                                            
Query: 213     ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 257
               || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 5363545 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 5363589



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 578     ctactacgagtacatggggaagaa 601
               ||||| ||||||||||||||||||
Sbjct: 5364096 ctacttcgagtacatggggaagaa 5364119

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>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 153   gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 212
             ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 92426 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 92367

                           
Query: 213   ggcctcctagacgc 226
             |||||||| |||||
Sbjct: 92366 ggcctcctcgacgc 92353

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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                         
Query: 153   gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 212
             |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 35563 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 35622

                                                          
Query: 213   ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 257
             || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 35623 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 35667



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 578   ctactacgagtacatggggaagaa 601
             ||||| ||||||||||||||||||
Sbjct: 36174 ctacttcgagtacatggggaagaa 36197

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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 141841

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                          
Query: 153    gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 212
              |||||||| ||||||||||||||||||  ||||||||| || ||||| ||  ||||||| 
Sbjct: 102312 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagcggcggtccagctt 102253

                                                           
Query: 213    ggcctcctagacgcactcagtgcggctggtggcaaggcgctgacc 257
              || || || || || ||||| ||||| | ||| || |||||||||
Sbjct: 102252 ggtcttctcgatgcgctcagcgcggccgctggaaacgcgctgacc 102208



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 578    ctactacgagtacatggggaagaa 601
              ||||| ||||||||||||||||||
Sbjct: 101701 ctacttcgagtacatggggaagaa 101678

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>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A),
            NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C
            (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete
            cds
          Length = 73617

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 300  gccgaggcggcggctgcggtgg 321
            ||||||||||||||||||||||
Sbjct: 2756 gccgaggcggcggctgcggtgg 2777

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>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the
             STXBP1 gene for syntaxin binding protein 1
             (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene
             (LOC138428), the gene for a novel protien (LOC286207), the
             gene for anovel protein (FLJ32780), the TOR2A gene for
             torsin family 2, member A (FLJ14771), the 3' end of the
             SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and
             five CpG islands, complete sequence
          Length = 163338

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 138   aggctgtgcttccaagcgcaagagct 163
             ||||||||||||||||| ||||||||
Sbjct: 60628 aggctgtgcttccaagcccaagagct 60653

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>ref|XM_474640.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 540 ggcgggccgtcggcgtttgagaggacgca 568
           ||||||||||||||||| |||||| ||||
Sbjct: 484 ggcgggccgtcggcgttcgagagggcgca 512

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>gb|AC116778.9| Mus musculus chromosome 1, clone RP24-481H3, complete sequence
          Length = 132180

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    aggtagccatggacaagattt 72
             |||||||||||||||||||||
Sbjct: 63118 aggtagccatggacaagattt 63138

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>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
              complete sequence
          Length = 144144

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 540    ggcgggccgtcggcgtttgagaggacgca 568
              ||||||||||||||||| |||||| ||||
Sbjct: 103594 ggcgggccgtcggcgttcgagagggcgca 103622

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>ref|NM_170325.1| Drosophila melanogaster CG31064-RA, transcript variant A (CG31064),
            mRNA
          Length = 3084

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 300  gccgaggcggcggctgcggtg 320
            |||||||||||||||||||||
Sbjct: 2087 gccgaggcggcggctgcggtg 2107

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>ref|NM_143288.2| Drosophila melanogaster CG31064-RE, transcript variant E (CG31064),
            mRNA
          Length = 3628

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 300  gccgaggcggcggctgcggtg 320
            |||||||||||||||||||||
Sbjct: 2634 gccgaggcggcggctgcggtg 2654

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>gb|AY051617.1| Drosophila melanogaster GH26613 full length cDNA
          Length = 2963

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 300  gccgaggcggcggctgcggtg 320
            |||||||||||||||||||||
Sbjct: 1956 gccgaggcggcggctgcggtg 1976

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 540     ggcgggccgtcggcgtttgagaggacgca 568
               ||||||||||||||||| |||||| ||||
Sbjct: 5127321 ggcgggccgtcggcgttcgagagggcgca 5127349

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>gb|AC009848.9|AC009848 Drosophila melanogaster, chromosome 3R, region 97E-98A, BAC clone
             BACR02B05, complete sequence
          Length = 189694

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 300   gccgaggcggcggctgcggtg 320
             |||||||||||||||||||||
Sbjct: 45889 gccgaggcggcggctgcggtg 45869

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>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full
           insert sequence
          Length = 1308

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 540 ggcgggccgtcggcgtttgagaggacgca 568
           ||||||||||||||||| |||||| ||||
Sbjct: 510 ggcgggccgtcggcgttcgagagggcgca 538

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>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full
           insert sequence
          Length = 1365

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 540 ggcgggccgtcggcgtttgagaggacgca 568
           ||||||||||||||||| |||||| ||||
Sbjct: 497 ggcgggccgtcggcgttcgagagggcgca 525

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>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete
              sequence
          Length = 222554

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 300    gccgaggcggcggctgcggtg 320
              |||||||||||||||||||||
Sbjct: 215220 gccgaggcggcggctgcggtg 215200

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>ref|NM_001031361.1| Gallus gallus gasdermin 1 (GSDM1), mRNA
          Length = 1588

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 437 caccaaagacagaggggacggcaccctg 464
           |||||||||||||| ||| |||||||||
Sbjct: 448 caccaaagacagagtggatggcaccctg 475

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>ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (LOC419963), mRNA
          Length = 5646

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  gagcagccatccagctgggc 215
            ||||||||||||||||||||
Sbjct: 1631 gagcagccatccagctgggc 1612

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>ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04330)
           partial mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 gtcgccggagtggatgagga 133
           ||||||||||||||||||||
Sbjct: 291 gtcgccggagtggatgagga 272

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>gb|AY427607.1| Mus musculus map chrx_207.1 peptidylprolyl isomerase A (Ppia)
           pseudogene, complete sequence
          Length = 697

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 57  gccatggacaagatttcagcacct 80
           ||||||||||||||||||| ||||
Sbjct: 319 gccatggacaagatttcaggacct 296

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>gb|AC146480.2| Danio rerio clone CH211-40O9, complete sequence
          Length = 166906

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ataataaataattctgttct 23
              ||||||||||||||||||||
Sbjct: 128127 ataataaataattctgttct 128146

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>ref|NG_005274.1| Mus musculus peptidylprolyl isomerase A pseudogene x_207.1
           (Ppia-psx_207.1) on chromosome X
          Length = 697

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 57  gccatggacaagatttcagcacct 80
           ||||||||||||||||||| ||||
Sbjct: 319 gccatggacaagatttcaggacct 296

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>emb|AL160400.20| Human DNA sequence from clone RP11-367G6 on chromosome 6 Contains a
            peptidylprolyl isomerase A (cyclophilin A) (PPIA)
            pseudogene and an argininosuccinate synthetase (ASS)
            (ASS1,CTLN1) pseudogene, complete sequence
          Length = 58408

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 57   gccatggacaagatttcagcacct 80
            ||||||||||||||||||| ||||
Sbjct: 3766 gccatggacaagatttcaggacct 3743

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>gb|AC164010.2| Mus musculus chromosome 18, clone RP24-391C15, complete sequence
          Length = 162585

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ctataataaataattctgtt 21
             ||||||||||||||||||||
Sbjct: 67629 ctataataaataattctgtt 67648

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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    gcaacaaggccgaggcggcg 311
              ||||||||||||||||||||
Sbjct: 498841 gcaacaaggccgaggcggcg 498860

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>emb|AL646047.9| Mouse DNA sequence from clone RP23-69P8 on chromosome 11 Contains the
             Myo1g gene for myosin 1G, a novel gene, a ribosomal
             protein L21 (Rpl21) pseudogene, the 5' end of a novel gene
             and two CpG islands, complete sequence
          Length = 93553

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 527   ggcggtgactgcgggcgggccgtcggcg 554
             ||||| |||||||||||||||| |||||
Sbjct: 51848 ggcggagactgcgggcgggccggcggcg 51875

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>emb|AJ721093.1| Gallus gallus mRNA for hypothetical protein, clone 34p8
          Length = 1588

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 437 caccaaagacagaggggacggcaccctg 464
           |||||||||||||| ||| |||||||||
Sbjct: 448 caccaaagacagagtggatggcaccctg 475

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 533     gactgcgggcgggccgtcgg 552
               ||||||||||||||||||||
Sbjct: 1530596 gactgcgggcgggccgtcgg 1530577

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>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence
          Length = 90800

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   catggtgctcagagcagcca 204
             ||||||||||||||||||||
Sbjct: 39007 catggtgctcagagcagcca 39026

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>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17,
              complete sequence
          Length = 170138

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    catgtttgcctacaacatct 183
              ||||||||||||||||||||
Sbjct: 133275 catgtttgcctacaacatct 133294

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>gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      ctataataaataattctgtt 21
              ||||||||||||||||||||
Sbjct: 156140 ctataataaataattctgtt 156159

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>ref|NR_000030.1| Homo sapiens peptidylprolyl isomerase A processed pseudogene
           (LOC134997) on chromosome 6
          Length = 811

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 57  gccatggacaagatttcagcacct 80
           ||||||||||||||||||| ||||
Sbjct: 409 gccatggacaagatttcaggacct 386

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 303      gaggcggcggctgcggtgga 322
                ||||||||||||||||||||
Sbjct: 20905653 gaggcggcggctgcggtgga 20905634

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>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 113064

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   ctccatggtgctcagagcag 201
             ||||||||||||||||||||
Sbjct: 16033 ctccatggtgctcagagcag 16052

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>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   catgtttgcctacaacatct 183
             ||||||||||||||||||||
Sbjct: 83981 catgtttgcctacaacatct 84000

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>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete
            genome
          Length = 10189

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  gccgaggcggcggctgcggt 319
            ||||||||||||||||||||
Sbjct: 7650 gccgaggcggcggctgcggt 7669

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>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0090E14
          Length = 161119

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   gaggcggcggctgcggtgga 322
             ||||||||||||||||||||
Sbjct: 32577 gaggcggcggctgcggtgga 32558

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>emb|AL929558.13| Zebrafish DNA sequence from clone CH211-159N7, complete sequence
          Length = 170597

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ataataaataattctgttct 23
              ||||||||||||||||||||
Sbjct: 128082 ataataaataattctgttct 128101

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>emb|BX548010.5| Mouse DNA sequence from clone RP23-22P24 on chromosome X, complete
             sequence
          Length = 192853

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    gccatggacaagatttcagcacct 80
             ||||||||||||||||||| ||||
Sbjct: 44804 gccatggacaagatttcaggacct 44827

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>emb|AJ328716.1|HSA328716 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NB5R
          Length = 680

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 299 ggccgaggcggcggctgcgg 318
           ||||||||||||||||||||
Sbjct: 51  ggccgaggcggcggctgcgg 32

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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    ctcagagcagccatccagct 211
              ||||||||||||||||||||
Sbjct: 173873 ctcagagcagccatccagct 173854

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>gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome
          Length = 7685

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  ggtgctcagagcagccatcc 207
            ||||||||||||||||||||
Sbjct: 2093 ggtgctcagagcagccatcc 2074

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>gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosome 9, complete sequence
          Length = 170491

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   ctccatggtgctcagagcag 201
             ||||||||||||||||||||
Sbjct: 67690 ctccatggtgctcagagcag 67709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,527,138
Number of Sequences: 3902068
Number of extensions: 5527138
Number of successful extensions: 92271
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91963
Number of HSP's gapped (non-prelim): 308
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result