ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK059645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 561 e-157
2gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome... 369 7e-99
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 369 7e-99
4gb|AY110932.1| Zea mays CL34612_1 mRNA sequence 353 4e-94
5ref|XM_864049.1| PREDICTED: Bos taurus similar to DTW domain con... 46 0.12
6ref|NM_185966.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.48
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
8dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
9dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
10ref|XR_002587.1| PREDICTED: Mus musculus similar to 3-phosphogly... 42 1.9
11gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosom... 42 1.9
12gb|AC165088.5| Mus musculus BAC clone RP23-147K12 from chromosom... 40 7.5
13ref|NM_029460.1| Mus musculus RIKEN cDNA 1700108E19 gene (170010... 40 7.5
14gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosom... 40 7.5
15gb|AC108827.10| Mus musculus chromosome 7, clone RP23-147O14, co... 40 7.5
16ref|XR_003005.1| PREDICTED: Mus musculus similar to 3-phosphogly... 40 7.5
17emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 i... 40 7.5
18emb|Z92542.2|HS245G19 Human DNA sequence from clone RP1-245G19 o... 40 7.5
19emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chro... 40 7.5
20gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Canc... 40 7.5
21gb|AE011768.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 7.5
22gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cance... 40 7.5
23gb|AC015908.10| Homo sapiens chromosome 17, clone RP11-963H4, co... 40 7.5
24emb|BX547997.9| Zebrafish DNA sequence from clone CH211-198F16 i... 40 7.5
25dbj|AK016194.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 7.5
26dbj|AK030272.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 7.5
27dbj|AK007132.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 7.5
28gb|AY172838.1| Carcharhinus plumbeus recombination activating ge... 40 7.5
29dbj|AP007256.1| Danio rerio DNA, clone:DKEY-188F22, complete seq... 40 7.5
30emb|AL806520.36| Mouse DNA sequence from clone RP23-19M23 on chr... 40 7.5
31gb|AC005284.1|AC005284 Homo sapiens chromosome 17, clone hRPK.79... 40 7.5
32emb|CT009582.3| Pan troglodytes chromosome X clone PTB-130G16 ma... 40 7.5
33gb|M14496.1|DROANTPG5 D.melanogaster Antennapedia homeotic (Antp... 40 7.5

>dbj|AK059645.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C01, full
           insert sequence
          Length = 1605

 Score =  561 bits (283), Expect = e-157
 Identities = 484/551 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagattgacagctgcttggctgcaggatcttctggcagcagggtatcggcagcctcgg 60
           |||||||| || ||||| ||||||||||| ||||| ||||  || || ||||||||||||
Sbjct: 387 gtgagattaacggctgcctggctgcaggaccttcttgcagtgggttaccggcagcctcgg 446

                                                                       
Query: 61  ctcatgtcattggagattgacaggcaacgggcaaccattggggagggtgacatgaaggag 120
           |||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct: 447 ctcatgtcattggaaactgacaggcagcgggcaaccattggagagggtgacatgaaggaa 506

                                                                       
Query: 121 tttgtgcccaagaagctgccatccgtgcaccttggggttgatgaaatcggcacagtgaac 180
           ||||| ||||||||||||||||| |||||| | || |||||||| || || |||||||||
Sbjct: 507 tttgtacccaagaagctgccatctgtgcacttgggagttgatgagattggtacagtgaac 566

                                                                       
Query: 181 tatgagattggaaatctgattaagtggcgaaagaactttggtaatgtcgtgctcatcatg 240
           |||||||||||||| |||||||||||| ||||||||||||| ||||| ||| | ||||||
Sbjct: 567 tatgagattggaaacctgattaagtggagaaagaactttggaaatgttgtgttgatcatg 626

                                                                       
Query: 241 catgttagtggacctgtagatcgtgtagccttggaatggaggctgctatatggacggata 300
           ||||||||||| ||||| |||||    ||  | || |||||||||||||||||| |||| 
Sbjct: 627 catgttagtgggcctgtggatcgcacggcactcgagtggaggctgctatatggaaggatt 686

                                                                       
Query: 301 ttcaagaccgttatcattcttgcggagcagagcaatgcagagcttgctgttgaacgctgc 360
           |||||||| |||||||| || || || ||||||||  |||||||||||||||| ||||||
Sbjct: 687 ttcaagacggttatcatactagctgaacagagcaacacagagcttgctgttgagcgctgc 746

                                                                       
Query: 361 gctctgtcacatgcatacaagtatctgcccaaggtgtttggaagatacggtggtgctgat 420
           ||  |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||
Sbjct: 747 gcgttgtcacatgcatacaagtttctgcccaaggtgtttgcgagatacggtggtgctgat 806

                                                                       
Query: 421 ggatttctcttcctccaagaccacatgattcttaattactggaaccttctgcaagccgac 480
           |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| || |||
Sbjct: 807 ggatttctcttcctgcaagatcacatgattcttaactactggaacctgctgcaggctgac 866

                                                                       
Query: 481 aaggaaaaactctggataactgataagattgcacattcttgggttactattccactggag 540
           ||||||||||| ||||||||  | |||||||||||||||||||||||| ||||| |||||
Sbjct: 867 aaggaaaaactttggataaccaacaagattgcacattcttgggttactgttccattggag 926

                      
Query: 541 agcaataaaga 551
           | ||| |||||
Sbjct: 927 aacaacaaaga 937



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>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01,
             complete sequence
          Length = 164709

 Score =  369 bits (186), Expect = 7e-99
 Identities = 333/382 (87%)
 Strand = Plus / Minus

                                                                         
Query: 1     gtgagattgacagctgcttggctgcaggatcttctggcagcagggtatcggcagcctcgg 60
             |||||||| || ||||| ||||||||||| ||||| ||||  || || ||||||||||||
Sbjct: 19519 gtgagattaacggctgcctggctgcaggaccttcttgcagtgggttaccggcagcctcgg 19460

                                                                         
Query: 61    ctcatgtcattggagattgacaggcaacgggcaaccattggggagggtgacatgaaggag 120
             |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct: 19459 ctcatgtcattggaaattgacaggcagcgggcaaccattggagagggtgacatgaaggaa 19400

                                                                         
Query: 121   tttgtgcccaagaagctgccatccgtgcaccttggggttgatgaaatcggcacagtgaac 180
             ||||| ||||||||||||||||| |||||| | || |||||||| || || |||||||||
Sbjct: 19399 tttgtacccaagaagctgccatctgtgcacttgggagttgatgagattggtacagtgaac 19340

                                                                         
Query: 181   tatgagattggaaatctgattaagtggcgaaagaactttggtaatgtcgtgctcatcatg 240
             |||||||||||||| |||||||||||| ||||||||||||| ||||| ||| | ||||||
Sbjct: 19339 tatgagattggaaacctgattaagtggagaaagaactttggaaatgttgtgttgatcatg 19280

                                                                         
Query: 241   catgttagtggacctgtagatcgtgtagccttggaatggaggctgctatatggacggata 300
             ||||||||||| ||||| |||||    ||  | || |||||||||||||||||| |||| 
Sbjct: 19279 catgttagtgggcctgtggatcgcacggcactcgagtggaggctgctatatggaaggatt 19220

                                                                         
Query: 301   ttcaagaccgttatcattcttgcggagcagagcaatgcagagcttgctgttgaacgctgc 360
             |||||||| |||||||| || || || ||||||||  |||||||||||||||| ||||||
Sbjct: 19219 ttcaagacggttatcatactagctgaacagagcaacacagagcttgctgttgagcgctgc 19160

                                   
Query: 361   gctctgtcacatgcatacaagt 382
             ||  ||||||||||||||||||
Sbjct: 19159 gcgttgtcacatgcatacaagt 19138



 Score =  161 bits (81), Expect = 3e-36
 Identities = 108/117 (92%)
 Strand = Plus / Minus

                                                                         
Query: 384   tctgcccaaggtgtttggaagatacggtggtgctgatggatttctcttcctccaagacca 443
             |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 17806 tctgcccaaggtgtttgcgagatacggtggtgctgatggatttctcttcctgcaagatca 17747

                                                                      
Query: 444   catgattcttaattactggaaccttctgcaagccgacaaggaaaaactctggataac 500
             |||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 17746 catgattcttaactactggaacctgctgcaggctgacaaggaaaaactttggataac 17690



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 506   agattgcacattcttgggttactattccactggagagcaataaaga 551
             ||||||||||||||||||||||| ||||| |||||| ||| |||||
Sbjct: 17605 agattgcacattcttgggttactgttccattggagaacaacaaaga 17560



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  369 bits (186), Expect = 7e-99
 Identities = 333/382 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        gtgagattgacagctgcttggctgcaggatcttctggcagcagggtatcggcagcctcgg 60
                |||||||| || ||||| ||||||||||| ||||| ||||  || || ||||||||||||
Sbjct: 18852141 gtgagattaacggctgcctggctgcaggaccttcttgcagtgggttaccggcagcctcgg 18852082

                                                                            
Query: 61       ctcatgtcattggagattgacaggcaacgggcaaccattggggagggtgacatgaaggag 120
                |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct: 18852081 ctcatgtcattggaaattgacaggcagcgggcaaccattggagagggtgacatgaaggaa 18852022

                                                                            
Query: 121      tttgtgcccaagaagctgccatccgtgcaccttggggttgatgaaatcggcacagtgaac 180
                ||||| ||||||||||||||||| |||||| | || |||||||| || || |||||||||
Sbjct: 18852021 tttgtacccaagaagctgccatctgtgcacttgggagttgatgagattggtacagtgaac 18851962

                                                                            
Query: 181      tatgagattggaaatctgattaagtggcgaaagaactttggtaatgtcgtgctcatcatg 240
                |||||||||||||| |||||||||||| ||||||||||||| ||||| ||| | ||||||
Sbjct: 18851961 tatgagattggaaacctgattaagtggagaaagaactttggaaatgttgtgttgatcatg 18851902

                                                                            
Query: 241      catgttagtggacctgtagatcgtgtagccttggaatggaggctgctatatggacggata 300
                ||||||||||| ||||| |||||    ||  | || |||||||||||||||||| |||| 
Sbjct: 18851901 catgttagtgggcctgtggatcgcacggcactcgagtggaggctgctatatggaaggatt 18851842

                                                                            
Query: 301      ttcaagaccgttatcattcttgcggagcagagcaatgcagagcttgctgttgaacgctgc 360
                |||||||| |||||||| || || || ||||||||  |||||||||||||||| ||||||
Sbjct: 18851841 ttcaagacggttatcatactagctgaacagagcaacacagagcttgctgttgagcgctgc 18851782

                                      
Query: 361      gctctgtcacatgcatacaagt 382
                ||  ||||||||||||||||||
Sbjct: 18851781 gcgttgtcacatgcatacaagt 18851760



 Score =  161 bits (81), Expect = 3e-36
 Identities = 108/117 (92%)
 Strand = Plus / Minus

                                                                            
Query: 384      tctgcccaaggtgtttggaagatacggtggtgctgatggatttctcttcctccaagacca 443
                |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 18850428 tctgcccaaggtgtttgcgagatacggtggtgctgatggatttctcttcctgcaagatca 18850369

                                                                         
Query: 444      catgattcttaattactggaaccttctgcaagccgacaaggaaaaactctggataac 500
                |||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 18850368 catgattcttaactactggaacctgctgcaggctgacaaggaaaaactttggataac 18850312



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 506      agattgcacattcttgggttactattccactggagagcaataaaga 551
                ||||||||||||||||||||||| ||||| |||||| ||| |||||
Sbjct: 18850227 agattgcacattcttgggttactgttccattggagaacaacaaaga 18850182



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>gb|AY110932.1| Zea mays CL34612_1 mRNA sequence
          Length = 1215

 Score =  353 bits (178), Expect = 4e-94
 Identities = 330/383 (86%)
 Strand = Plus / Plus

                                                                       
Query: 169 ggcacagtgaactatgagattggaaatctgattaagtggcgaaagaactttggtaatgtc 228
           |||||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||| 
Sbjct: 18  ggcacagttaactatgagattggaaatcttattaagtggagaaagaactttggaaatgtt 77

                                                                       
Query: 229 gtgctcatcatgcatgttagtggacctgtagatcgtgtagccttggaatggaggctgcta 288
           ||| | |||||||| |||||||| ||||| |||||   |||  | || ||||||||||| 
Sbjct: 78  gtgatgatcatgcacgttagtgggcctgtggatcgcacagcacttgagtggaggctgctt 137

                                                                       
Query: 289 tatggacggatattcaagaccgttatcattcttgcggagcagagcaatgcagagcttgct 348
           |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 138 tatggaaggattttcaagacggttatcattcttgctgagcagagcaatgcagagcttgct 197

                                                                       
Query: 349 gttgaacgctgcgctctgtcacatgcatacaagtatctgcccaaggtgtttggaagatac 408
           |||||||||||| |  ||||||| || || |||||| |||||||||     | |||||||
Sbjct: 198 gttgaacgctgcacgttgtcacacgcttataagtatttgcccaaggnnnnngaaagatac 257

                                                                       
Query: 409 ggtggtgctgatggatttctcttcctccaagaccacatgattcttaattactggaacctt 468
            ||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||| 
Sbjct: 258 agtggtgctgatggatttgtgttcctccaagaccacatggttcttaactactggaacctg 317

                                                                       
Query: 469 ctgcaagccgacaaggaaaaactctggataactgataagattgcacattcttgggttact 528
            ||||||| ||||||||||  || ||||| ||  ||||||||||||||||||||||||||
Sbjct: 318 atgcaagctgacaaggaaannctttggattacaaataagattgcacattcttgggttact 377

                                  
Query: 529 attccactggagagcaataaaga 551
            ||||| ||||||  ||||||||
Sbjct: 378 gttccattggagacgaataaaga 400



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>ref|XM_864049.1| PREDICTED: Bos taurus similar to DTW domain containing 2
           (LOC613362), mRNA
          Length = 1541

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 11  cagctgcttggctgcaggatcttctgg 37
           |||||||||||||||||| ||||||||
Sbjct: 99  cagctgcttggctgcaggttcttctgg 125



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>ref|NM_185966.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2190

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                        
Query: 64   atgtcattggagattgacaggcaacgggcaaccattggggagggtgacatgaaggagttt 123
            |||||||||||||||||  ||| | |||| ||||||||  | || |||| | ||| ||||
Sbjct: 1273 atgtcattggagattgatcggccaagggcgaccattggacatggggacaagcaggtgttt 1332

                                                  
Query: 124  gtgcccaagaagctgccatccgtgcaccttggggttga 161
            || |||||||| |||||  |||| || ||||| |||||
Sbjct: 1333 gtccccaagaaactgcctaccgtacatcttggtgttga 1370



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                            
Query: 64       atgtcattggagattgacaggcaacgggcaaccattggggagggtgacatgaaggagttt 123
                |||||||||||||||||  ||| | |||| ||||||||  | || |||| | ||| ||||
Sbjct: 27568669 atgtcattggagattgatcggccaagggcgaccattggacatggggacaagcaggtgttt 27568728

                                                      
Query: 124      gtgcccaagaagctgccatccgtgcaccttggggttga 161
                || |||||||| |||||  |||| || ||||| |||||
Sbjct: 27568729 gtccccaagaaactgcctaccgtacatcttggtgttga 27568766



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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                         
Query: 64    atgtcattggagattgacaggcaacgggcaaccattggggagggtgacatgaaggagttt 123
             |||||||||||||||||  ||| | |||| ||||||||  | || |||| | ||| ||||
Sbjct: 25662 atgtcattggagattgatcggccaagggcgaccattggacatggggacaagcaggtgttt 25721

                                                   
Query: 124   gtgcccaagaagctgccatccgtgcaccttggggttga 161
             || |||||||| |||||  |||| || ||||| |||||
Sbjct: 25722 gtccccaagaaactgcctaccgtacatcttggtgttga 25759



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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0018C07
          Length = 141707

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 79/98 (80%)
 Strand = Plus / Plus

                                                                          
Query: 64     atgtcattggagattgacaggcaacgggcaaccattggggagggtgacatgaaggagttt 123
              |||||||||||||||||  ||| | |||| ||||||||  | || |||| | ||| ||||
Sbjct: 132640 atgtcattggagattgatcggccaagggcgaccattggacatggggacaagcaggtgttt 132699

                                                    
Query: 124    gtgcccaagaagctgccatccgtgcaccttggggttga 161
              || |||||||| |||||  |||| || ||||| |||||
Sbjct: 132700 gtccccaagaaactgcctaccgtacatcttggtgttga 132737



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>ref|XR_002587.1| PREDICTED: Mus musculus similar to 3-phosphoglycerate dehydrogenase
           (LOC383629), mRNA
          Length = 1664

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  caggatcttctggcagcaggg 45
           |||||||||||||||||||||
Sbjct: 552 caggatcttctggcagcaggg 532



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>gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosome 1, complete sequence
          Length = 147442

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    caggatcttctggcagcaggg 45
             |||||||||||||||||||||
Sbjct: 49773 caggatcttctggcagcaggg 49793



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>gb|AC165088.5| Mus musculus BAC clone RP23-147K12 from chromosome 5, complete sequence
          Length = 220877

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     aggatcttctggcagcaggg 45
              ||||||||||||||||||||
Sbjct: 152925 aggatcttctggcagcaggg 152944



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>ref|NM_029460.1| Mus musculus RIKEN cDNA 1700108E19 gene (1700108E19Rik), mRNA
          Length = 1144

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 aggatcttctggcagcaggg 45
          ||||||||||||||||||||
Sbjct: 76 aggatcttctggcagcaggg 95



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>gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosome 14, complete
             sequence
          Length = 197419

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   ctatgagattggaaatctga 199
             ||||||||||||||||||||
Sbjct: 77213 ctatgagattggaaatctga 77194



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>gb|AC108827.10| Mus musculus chromosome 7, clone RP23-147O14, complete sequence
          Length = 220823

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     aggatcttctggcagcaggg 45
              ||||||||||||||||||||
Sbjct: 152925 aggatcttctggcagcaggg 152944



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>ref|XR_003005.1| PREDICTED: Mus musculus similar to 3-phosphoglycerate
          dehydrogenase (LOC547171), mRNA
          Length = 1558

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 26 aggatcttctggcagcaggg 45
          ||||||||||||||||||||
Sbjct: 68 aggatcttctggcagcaggg 49



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>emb|CR377220.10| Zebrafish DNA sequence from clone DKEY-279E10 in linkage group 1,
             complete sequence
          Length = 169012

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   aaagaactttggtaatgtcg 229
             ||||||||||||||||||||
Sbjct: 18015 aaagaactttggtaatgtcg 17996



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>emb|Z92542.2|HS245G19 Human DNA sequence from clone RP1-245G19 on chromosome Xp22.11-22.2
             Contains the 3' end of the CDKL5 gene for cyclin-dependent
             kinase-like 5, the 3' end of the RS1 gene for
             retinoschisis (X-linked, juvenile) 1, and a gap junction
             protein, alpha 2, 38kDa (connexin 38) (GJA2) pseudogene,
             complete sequence
          Length = 145538

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   cacatgattcttaattactg 461
             ||||||||||||||||||||
Sbjct: 75167 cacatgattcttaattactg 75148



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>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two
              novel genes and three CpG islands, complete sequence
          Length = 158779

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    gagcaatgcagagcttgctg 349
              ||||||||||||||||||||
Sbjct: 131146 gagcaatgcagagcttgctg 131127



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>gb|AC164579.5| Mus musculus 6 BAC RP23-384P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214578

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 534    actggagagcaataaagaag 553
              ||||||||||||||||||||
Sbjct: 135214 actggagagcaataaagaag 135195



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>gb|AE011768.1| Xanthomonas axonopodis pv. citri str. 306,  section 146 of 469 of the
            complete genome
          Length = 12907

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   gcagcagggtatcggcagcc 56
            ||||||||||||||||||||
Sbjct: 8586 gcagcagggtatcggcagcc 8605



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>gb|AC158662.7| Mus musculus 6 BAC RP23-20K24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 250218

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   actggagagcaataaagaag 553
             ||||||||||||||||||||
Sbjct: 63877 actggagagcaataaagaag 63858



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>gb|AC015908.10| Homo sapiens chromosome 17, clone RP11-963H4, complete sequence
          Length = 158693

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 421  ggatttctcttcctccaaga 440
            ||||||||||||||||||||
Sbjct: 8983 ggatttctcttcctccaaga 8964



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>emb|BX547997.9| Zebrafish DNA sequence from clone CH211-198F16 in linkage group 2,
              complete sequence
          Length = 175234

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    ttgcggagcagagcaatgca 339
              ||||||||||||||||||||
Sbjct: 135465 ttgcggagcagagcaatgca 135484



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>dbj|AK016194.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
          library, clone:4930562N12 product:hypothetical
          Periplasmic binding protein-like I structure containing
          protein, full insert sequence
          Length = 1144

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 aggatcttctggcagcaggg 45
          ||||||||||||||||||||
Sbjct: 76 aggatcttctggcagcaggg 95



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>dbj|AK030272.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
          library, clone:4933440J23 product:hypothetical protein,
          full insert sequence
          Length = 2953

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 aggatcttctggcagcaggg 45
          ||||||||||||||||||||
Sbjct: 41 aggatcttctggcagcaggg 60



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>dbj|AK007132.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
          library, clone:1700108E19 product:hypothetical
          Periplasmic binding protein-like I structure containing
          protein, full insert sequence
          Length = 1110

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 aggatcttctggcagcaggg 45
          ||||||||||||||||||||
Sbjct: 63 aggatcttctggcagcaggg 82



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>gb|AY172838.1| Carcharhinus plumbeus recombination activating gene 1 (RAG1) gene,
             partial cds; and recombination activating gene 2 (RAG2)
             gene, complete cds
          Length = 11101

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 518   cttgggttactattccactggaga 541
             ||||||| ||||||||||||||||
Sbjct: 10175 cttgggtcactattccactggaga 10198



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>dbj|AP007256.1| Danio rerio DNA, clone:DKEY-188F22, complete sequence
          Length = 155274

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   ggataactgataagattgca 513
             ||||||||||||||||||||
Sbjct: 47449 ggataactgataagattgca 47430



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>emb|AL806520.36| Mouse DNA sequence from clone RP23-19M23 on chromosome X, complete
             sequence
          Length = 190804

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    aggatcttctggcagcaggg 45
             ||||||||||||||||||||
Sbjct: 22800 aggatcttctggcagcaggg 22819



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>gb|AC005284.1|AC005284 Homo sapiens chromosome 17, clone hRPK.795_F_17, complete sequence
          Length = 192802

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 421  ggatttctcttcctccaaga 440
            ||||||||||||||||||||
Sbjct: 7012 ggatttctcttcctccaaga 7031



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>emb|CT009582.3| Pan troglodytes chromosome X clone PTB-130G16 map Xq28, complete sequence
          Length = 195752

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    cacatgattcttaattactg 461
              ||||||||||||||||||||
Sbjct: 169510 cacatgattcttaattactg 169491



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>gb|M14496.1|DROANTPG5 D.melanogaster Antennapedia homeotic (Antp) gene, exon 8
          Length = 3170

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 238 atgcatgttagtggacctgtagat 261
           |||||| |||||||||||||||||
Sbjct: 201 atgcattttagtggacctgtagat 224


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,656,460
Number of Sequences: 3902068
Number of extensions: 4656460
Number of successful extensions: 89889
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89778
Number of HSP's gapped (non-prelim): 110
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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