ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22d03 |
|---|---|
| Clone Library Name | barley_pub |
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 122 bits (306), Expect = 7e-28 Identities = 72/177 (40%), Positives = 100/177 (56%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVGDLS E+ + + F+ + SDARV+ D TG+S+GYGFVSF N+ +AE AI M Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G+WLG RQIR NWAT+ K +N N +D ++ +P+N Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQEN------------NTKQLRFEDVVNQSSPKN-- 204 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 TVY G + + D+L R ++ G I E+RV EKG+ F+R+STH AA AI Sbjct: 205 --CTVYCGGIASGLT-DQLMRQTFS-PFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257 Score = 36.6 bits (83), Expect = 0.047 Identities = 18/78 (23%), Positives = 35/78 (44%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++ G ++S + D + FS + + RV + +GY FV F + A AI + Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 260 Query: 190 TGKWLGSRQIRCNWATKT 243 G + ++C W ++ Sbjct: 261 NGTTIEGHVVKCYWGKES 278
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 120 bits (301), Expect = 2e-27 Identities = 71/177 (40%), Positives = 100/177 (56%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVGDLS E+ + + F+ + SDARV+ D TG+S+GYGFVSF N+ +AE AI M Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G+WLG RQIR NWAT+ K + +N +D ++ +P+N Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQE------------TNTKQLRFEDVVNQSSPKN-- 221 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 TVY G + + D+L R ++ G I E+RV EKG+ F+R+STH AA AI Sbjct: 222 --CTVYCGGIASGLT-DQLMRQTFS-PFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274 Score = 36.6 bits (83), Expect = 0.047 Identities = 18/78 (23%), Positives = 35/78 (44%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++ G ++S + D + FS + + RV + +GY FV F + A AI + Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277 Query: 190 TGKWLGSRQIRCNWATKT 243 G + ++C W ++ Sbjct: 278 NGTTIEGHVVKCYWGKES 295
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 116 bits (291), Expect = 4e-26 Identities = 69/177 (38%), Positives = 97/177 (54%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVGDLS E+ + A F+ + SDARV+ D TG+S+GYGFVSF N+ +AE AI +M Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G+WLG RQIR NWAT+ K + SN + + S+ +P N Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYE------------SNTKQLSYDEVVSQSSPNN-- 213 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 TVY G + + + + F G I E+RV +KG+ F+R+S+H AA AI Sbjct: 214 --CTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFSSHESAAHAI 266 Score = 67.4 bits (163), Expect = 3e-11 Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 4/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG+LS +V +A + FS C + +++ D T + Y FV F + A A+ M Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G+ + ++++ NWAT T + +K++T + V + + + Sbjct: 67 NGRKIMGKEVKVNWAT-TPSSQKKDTSSSTVV----------------------STQRSQ 103 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 D V+VG+L E+ +++ F G ++++ + KG+GF+ + +A A Sbjct: 104 DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163 Query: 538 IQ 543 IQ Sbjct: 164 IQ 165 Score = 38.1 bits (87), Expect = 0.016 Identities = 19/78 (24%), Positives = 36/78 (46%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++ G ++S + + + FS + + RV D +GY FV F + + A AI + Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 269 Query: 190 TGKWLGSRQIRCNWATKT 243 G + ++C W +T Sbjct: 270 NGTTIEGHVVKCYWGKET 287
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 113 bits (282), Expect = 4e-25 Identities = 66/177 (37%), Positives = 97/177 (54%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVGDLS ++ + A F+ + SDARV+ D TG+S+GYGFVSF N+ +AE AI +M Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G+WLG RQIR NWAT+ K + SN + + ++ +P N Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYE------------SNTKQLSYDEVVNQSSPSN-- 213 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 TVY G + + + + F G I E+RV +KG+ F+R+++H AA AI Sbjct: 214 --CTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHESAAHAI 266 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/182 (23%), Positives = 85/182 (46%), Gaps = 4/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG+LS +V +A + FS C + +++ D T + Y FV F + A A+ M Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G+ + ++++ NWAT ++++K D ++ V++ S N Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK---DTSSSTVVSTQRSQN------------------- 104 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 V+VG+L ++ +++ F G ++++ + KG+GF+ + +A A Sbjct: 105 -HFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163 Query: 538 IQ 543 IQ Sbjct: 164 IQ 165 Score = 38.5 bits (88), Expect = 0.012 Identities = 19/78 (24%), Positives = 36/78 (46%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++ G ++S + + + FS + + RV D +GY FV F + + A AI + Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269 Query: 190 TGKWLGSRQIRCNWATKT 243 G + ++C W +T Sbjct: 270 NGTTIEGHVVKCYWGKET 287
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 101 bits (251), Expect = 2e-21 Identities = 72/232 (31%), Positives = 103/232 (44%), Gaps = 55/232 (23%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVGDL+ V+D TL F +PS VMWD +TG SRGYGFVSF +Q +A+ A+ M Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222 Query: 190 TGKWLGSRQIRCNWATK------TNAEEK-----------QETDNHNAVVLTNGGSSNAA 318 G+ L R +R NWA K N +++ ++ +N+N + G + N Sbjct: 223 QGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNNNNNNNMNMGMNMNMN 282 Query: 319 MEANQDTG----------------SKENPENN----------------------PDFTTV 384 M N G S+ P+ + P TT Sbjct: 283 MNMNNSRGMPPSSMGMPIGAMPLPSQGQPQQSQTIGLPPQVNPQAVDHIIRSAPPRVTTA 342 Query: 385 YVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 Y+GN+ H +L F N G I + + EKG FI+Y TH +AA+ I Sbjct: 343 YIGNIPHFATEADLIPLFQNFGF--ILDFKHYPEKGCCFIKYDTHEQAAVCI 392 Score = 42.4 bits (98), Expect = 9e-04 Identities = 20/88 (22%), Positives = 42/88 (47%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG+L + + L F ++ ++M D K ++ Y FV + +A A+ + Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 134 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 GK + + ++ NWA ++ +T N Sbjct: 135 NGKQIENNIVKINWAFQSQQSSSDDTFN 162 Score = 33.5 bits (75), Expect = 0.40 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%) Frame = +1 Query: 232 ATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEV 411 A + N+E+ ++ N + + AN TG +E + +YVGNL + Sbjct: 40 AVEGNSEQAEDNQGEN---------DPSVVPANAITGGRETSDR-----VLYVGNLDKAI 85 Query: 412 NRDELHRHFYNLGVGAIEEVRVQQEK-----GFGFIRYSTHGEAALAIQ 543 D L + ++ +G G I +++ +K + F+ Y +A +A+Q Sbjct: 86 TEDIL-KQYFQVG-GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 132
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 92.8 bits (229), Expect = 6e-19 Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACF-STYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 IFVGDLS VN+ +Y+ F S Y SC A++M D +T SRGYGFV F ++ + ++A+ E Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQ--DTGSKENPE 360 M G+ G R IR AT + N V + G +AA Q DT + Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTAN----- 302 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 +TV+VG L V+ +EL F N G I V++ KG GF+++ A +AI Sbjct: 303 -----STVFVGGLSKFVSEEELKYLFQNF--GEIVYVKIPPGKGCGFVQFVNRQSAEIAI 355 Score = 44.3 bits (103), Expect = 2e-04 Identities = 26/79 (32%), Positives = 39/79 (49%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG LS V++ L F + ++ +G GFV F N+Q AE AI ++ Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSAEIAINQL 358 Query: 190 TGKWLGSRQIRCNWATKTN 246 G LG+ +IR +W N Sbjct: 359 QGYPLGNSRIRLSWGRNQN 377 Score = 41.6 bits (96), Expect = 0.001 Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 6/185 (3%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++G+L V +A + ++T +++ + TG + GY FV F + EA +A++ Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152 Query: 184 EMTGKWLGSRQI-RCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 G+ + + NWA +GG G +E Sbjct: 153 MNNKPIPGTNHLFKLNWA--------------------SGG------------GLREKSI 180 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHF---YNLGVGA--IEEVRVQQEKGFGFIRYSTHGE 525 + +++VG+L VN +++ F YN A + + + +G+GF+R++ + Sbjct: 181 SKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDEND 240 Query: 526 AALAI 540 A+ Sbjct: 241 QKSAL 245
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 80.9 bits (198), Expect = 2e-15 Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 28/204 (13%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACF-STYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 IFVGDL+ V ++ L+ F + Y S S A+++ D TG S+GYGFV F N E + A++E Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETD-NHNAVVLTNGGSSNAAM--------EANQDT 339 M G +L R I+ + D N ++ L N + + N + Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNM 284 Query: 340 GSKEN------------PENN----PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV 471 G K N P N P+ TTV++G L V DEL +F G I V Sbjct: 285 GFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GTIVYV 342 Query: 472 RVQQEKGFGFIRY--STHGEAALA 537 ++ K GF++Y EAA+A Sbjct: 343 KIPVGKCCGFVQYVDRLSAEAAIA 366 Score = 39.7 bits (91), Expect = 0.006 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 18/198 (9%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCS-DARVMWDNKTGR----------SRGYGFVS 147 G ++++GDL + T+ +++ + + R+MW+N ++GY FV Sbjct: 53 GNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVD 112 Query: 148 FRNQQEAETAITE--MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAM 321 F + A A+ + M +++++ NWAT + + +N + Sbjct: 113 FPSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKS------------- 159 Query: 322 EANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----- 486 NN +++VG+L V +L F N V + Sbjct: 160 ------------GNN---CSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMS 204 Query: 487 KGFGFIRYSTHGEAALAI 540 KG+GF++++ E LA+ Sbjct: 205 KGYGFVKFTNSDEQQLAL 222 Score = 33.5 bits (75), Expect = 0.40 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +F+G LSS V + L A F + + ++ G+ GFV + ++ AE AI Sbjct: 313 TTVFIGGLSSLVTEDELRAYFQPFGTIVYVKI----PVGKC--CGFVQYVDRLSAEAAIA 366 Query: 184 EMTGKWLGSRQIRCNW 231 M G + + ++R +W Sbjct: 367 GMQGFPIANSRVRLSW 382
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 80.9 bits (198), Expect = 2e-15 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 1/178 (0%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACF-STYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 IFVGDL D+ L+ F S YPSC+ A+++ D TG SR YGFV F +++E + A+ Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMH 243 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 M G R +R + A+ + D+ +V T S + + NQD S + Sbjct: 244 MQGYLCQGRPLRISVAS-PKSRASIAADSALGIVPT----STSNRQPNQDLCSMD----- 293 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 P TTV+VG L ++ +L F G I +++ KG GF++YS A AI Sbjct: 294 PLNTTVFVGGLASNLSEKDLQVCFQPF--GRILNIKIPFGKGCGFVQYSEKSAAEKAI 349 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 20/125 (16%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FVG L+S +++ L CF + + ++ + +G GFV + + AE AI Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAIN 350 Query: 184 EMTGKWLGSRQIRCNWATKT------NAEEKQETDN--------------HNAVVLTNGG 303 M G +G+ IR W T + + Q +D + +V+ N G Sbjct: 351 TMQGALVGTSHIRLAWGHNTLPVSALSQSQSQVSDEGFDRTLSANQIFGMNQSVIGANSG 410 Query: 304 SSNAA 318 SSN++ Sbjct: 411 SSNSS 415
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 78.6 bits (192), Expect = 1e-14 Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 6/183 (3%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IFVG LS ++D L F ARV+++ T RSRGYG+V F N+ AE AI EM Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 GK + R I C+ +T A N D K + Sbjct: 230 QGKEIDGRPINCDMSTSKPA-------------------------GNNDRAKKFGDTPSE 264 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRV------QQEKGFGFIRYSTHGEAA 531 T+++GNL +RD + F G + VR+ +Q KGFG++++S +A Sbjct: 265 PSDTLFLGNLSFNADRDAIFELFAK--HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAK 322 Query: 532 LAI 540 A+ Sbjct: 323 KAL 325 Score = 44.7 bits (104), Expect = 2e-04 Identities = 17/76 (22%), Positives = 45/76 (59%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+G+LS + ++ F+ + R+ +T + +G+G+V F N ++A+ A+ + Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 190 TGKWLGSRQIRCNWAT 237 G+++ +R +R ++++ Sbjct: 329 QGEYIDNRPVRLDFSS 344
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 75.5 bits (184), Expect = 9e-14 Identities = 67/225 (29%), Positives = 93/225 (41%), Gaps = 47/225 (20%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFST-YPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +FVGDLS +A L + F T + S RVM D TG SR +GFV F ++ E A+ E Sbjct: 194 LFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIE 253 Query: 187 MTGKWLGSRQIRCNWATKTN----------------AEEKQETDN--------------- 273 M+GKW R +R +AT N ++ Q+ D Sbjct: 254 MSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNL 313 Query: 274 -------------HNA--VVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHE 408 HNA + L GG SN M N D+ +P TTV+VG L + Sbjct: 314 IQNNSNMLPLNALHNAPPMHLNEGGISN--MRVN-DSLPSNTYNTDPTNTTVFVGGLVPK 370 Query: 409 VNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 +L F G I VR+ K GF+++ +A +IQ Sbjct: 371 TTEFQLRSLFKPF--GPILNVRIPNGKNCGFVKFEKRIDAEASIQ 413 Score = 37.4 bits (85), Expect = 0.028 Identities = 26/116 (22%), Positives = 47/116 (40%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FVG L + + L + F + + R+ + GFV F + +AE +I Sbjct: 360 TTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIP------NGKNCGFVKFEKRIDAEASIQ 413 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKE 351 + G +G IR +W +++ K + A + A A+ SK+ Sbjct: 414 GLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRAPSAASSVDNSKQ 469
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 73.9 bits (180), Expect = 3e-13 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L FS + + +VM DN +GRSRG+GFV++ N +EA+ A+T Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVT 249 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 EM GK + R + A K + + + K+ N Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQI--------------------KQERIN 289 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHGEAALA 537 +YV NL ++ D L + F G +V + KGFGF+ +S+ EA A Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKA 349 Query: 538 I 540 + Sbjct: 350 V 350 Score = 61.2 bits (147), Expect = 2e-09 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+ +L +++ LY FS + +V+ D SRGYGFV F Q+ A AI M Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G+K Sbjct: 159 NGMLLNDRKVFV-------------------------GHFKSRRERELEYGAKV-----M 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ---QEKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ L F G +V + + +GFGF+ Y H EA A+ Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAV 248 Score = 52.8 bits (125), Expect = 6e-07 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +++GDL +V +A LY FS RV D T RS GY +++F+ +AE A+ M Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + R IR W + +D G +++ N Sbjct: 73 NFEVIKGRPIRIMW-------------------------------SQRDPGLRKSGVGN- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ--EKGFGFIRYSTHGEAALAIQ 543 V++ NL ++ L+ F G +V + +G+GF+ + T A AIQ Sbjct: 101 ----VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQ 156 Score = 48.9 bits (115), Expect = 9e-06 Identities = 24/73 (32%), Positives = 43/73 (58%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L FS Y + + +VM + G S+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQI 219 TEM G+ + ++ + Sbjct: 351 TEMNGRIVSTKPL 363
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 73.6 bits (179), Expect = 3e-13 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 4/183 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L FS + + +VM D+ +GRSRG+GFV++ N +EA+ A++ Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVS 249 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 EM GK + R I A K + + + K+ N Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQI--------------------KQERIN 289 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEAA 531 +YV NL ++ D L + F L G I +V E KGFGF+ +S+ EA Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEAT 347 Query: 532 LAI 540 A+ Sbjct: 348 KAV 350 Score = 60.5 bits (145), Expect = 3e-09 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+ +L +++ LY FS + + +V+ D SRGYGFV F + A AI M Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G+K Sbjct: 159 NGMLLNDRKVFV-------------------------GHFKSRRERELEYGAKV-----M 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ---QEKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ L F G +V + + +GFGF+ Y H EA A+ Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAV 248 Score = 53.9 bits (128), Expect = 3e-07 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +++GDL +V +A LY FS RV D T RS Y +++F+ +AE A+ M Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + R IR W+ + D G +++ N Sbjct: 73 NFEVIKGRPIRIMWSQR-------------------------------DPGLRKSGVGN- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE--KGFGFIRYSTHGEAALAIQ 543 V++ NL ++ L+ F G +V + +G+GF+ + TH A AIQ Sbjct: 101 ----VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQ 156 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/73 (32%), Positives = 43/73 (58%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L F Y + + A+VM + G S+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQI 219 TEM G+ + ++ + Sbjct: 351 TEMNGRIVSTKPL 363
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 72.4 bits (176), Expect = 8e-13 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L FS + + +VM D+ TGRSRG+GFV++ N +EA+ A++ Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVS 249 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 EM GK + R I A K + + + K+ N Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQI--------------------KQERIN 289 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHGEAALA 537 +YV NL ++ D L + F G +V + KGFGF+ +S+ EA A Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKA 349 Query: 538 I 540 + Sbjct: 350 V 350 Score = 62.4 bits (150), Expect = 8e-10 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+ +L +++ LY FS + + +V+ D SRGYGFV F Q+ A AI M Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G+K Sbjct: 159 NGMLLNDRKVFV-------------------------GHFKSRRERELEYGAKV-----M 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ---QEKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ L F G +V + + +GFGF+ Y H EA A+ Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAV 248 Score = 53.5 bits (127), Expect = 4e-07 Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS RV D T RS GY +++F+ +AE A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + R IR W + +D G +++ N Sbjct: 73 NFEVIKGRPIRIMW-------------------------------SQRDPGLRKSGVGN- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ--EKGFGFIRYSTHGEAALAIQ 543 V++ NL ++ L+ F G +V + +G+GF+ + T A AIQ Sbjct: 101 ----VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQ 156 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/73 (34%), Positives = 44/73 (60%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L FS Y + + A+VM + G S+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQI 219 TEM G+ + ++ + Sbjct: 351 TEMNGRIVSTKPL 363
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 71.2 bits (173), Expect = 2e-12 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 6/185 (3%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG LS V+D L F Y + ARV+ D ++GRS+GYG+V F + A+ A+ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 K + R + + L+N +N A Q G+ + + P Sbjct: 325 GTKEIDGRMVNLD--------------------LSNPRPANPQPYAQQRAGNFGDQLSEP 364 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTHGEAA 531 TV+VGNL D+L F G G I+ +R+ + KGFG++ +S A Sbjct: 365 S-DTVFVGNLSFNATEDDLSTAFG--GCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421 Query: 532 LAIQM 546 ++M Sbjct: 422 KCVEM 426
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 70.5 bits (171), Expect = 3e-12 Identities = 34/77 (44%), Positives = 53/77 (68%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+FVG+L ++VND +LY FS YPS +V+ D + G++RG+GFVSF++ + A E Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89 Query: 187 MTGKWLGSRQIRCNWAT 237 GK++GSR ++ + AT Sbjct: 90 KNGKYIGSRPVKLSRAT 106 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Frame = +1 Query: 358 ENNPDFTTVYVGNLGHEVNRDELHRHFY---NLGVGAIEEVRVQQEKGFGFIRY 510 E +P+ ++VGNLG++VN + L++ F +L + R + +GFGF+ + Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSF 77
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 70.5 bits (171), Expect = 3e-12 Identities = 35/75 (46%), Positives = 50/75 (66%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T++F+G LS +DA+L F+ + DA+V+ D +TGRSRG+GFV+F ++ A AI+ Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94 Query: 184 EMTGKWLGSRQIRCN 228 EM GK L R IR N Sbjct: 95 EMDGKELNGRHIRVN 109
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 70.5 bits (171), Expect = 3e-12 Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 4/183 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG+L + A L F + V++D TGRSRG+GFV+ +++E E A + Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 G L R +R N EK+E + GGS GS ++ Sbjct: 148 FNGYELDGRALRVN---SGPPPEKRENSSFRENSSFRGGSRGG--------GSFDSSNR- 195 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEAAL 534 VYVGNL V++D L F G +V ++ +GFGF+ YS+ E Sbjct: 196 -----VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250 Query: 535 AIQ 543 AI+ Sbjct: 251 AIE 253 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/72 (38%), Positives = 43/72 (59%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG+L+ V+ L FS DA+V++D +GRSRG+GFV++ + +E AI Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254 Query: 187 MTGKWLGSRQIR 222 + G L R IR Sbjct: 255 LDGVDLNGRAIR 266
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 69.3 bits (168), Expect = 7e-12 Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 6/184 (3%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+L V+ A L F + V++D TGRSRG+GFV+ ++E E A + Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSN--AAMEANQDTGSKENPE 360 G + R IR N A K+E + GG+S+ + N G Sbjct: 148 FNGYEIDGRAIRVNAGP---APAKRENSSFGG---GRGGNSSYGGGRDGNSSFGGARGGR 201 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEA 528 + VYVGNL V+ L F G +V ++ +GFGF+ YS+ E Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261 Query: 529 ALAI 540 AI Sbjct: 262 NDAI 265 Score = 60.5 bits (145), Expect = 3e-09 Identities = 31/76 (40%), Positives = 47/76 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG+LS V+D L FS + DA+V++D +GRSRG+GFV++ + +E AI Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267 Query: 187 MTGKWLGSRQIRCNWA 234 + G L R IR + A Sbjct: 268 LNGVDLDGRSIRVSAA 283
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 68.2 bits (165), Expect = 1e-11 Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 4/183 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG+L + A L F + V++D TGRSRG+GFV+ +++E E A + Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 G L R +R N EK+E + GGS GS ++ Sbjct: 148 FNGYELDGRALRVN---SGPPPEKRENSSF------RGGSRGG--------GSFDSSNR- 189 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEAAL 534 VYVGNL V++D L F G +V ++ +GFGF+ YS+ E Sbjct: 190 -----VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244 Query: 535 AIQ 543 AI+ Sbjct: 245 AIE 247 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/72 (38%), Positives = 43/72 (59%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG+L+ V+ L FS DA+V++D +GRSRG+GFV++ + +E AI Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248 Query: 187 MTGKWLGSRQIR 222 + G L R IR Sbjct: 249 LDGVDLNGRAIR 260
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 68.2 bits (165), Expect = 1e-11 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 3/181 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L + +++ L+ FS++ + +V D TGRS+GYGFV F ++ A+ AI ++ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G + +Q+ + Q+ EN P Sbjct: 197 NGMLMNDKQVFVGHFIR-----------------------------RQERARDENTP-TP 226 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 FT VYV NL E+ DEL + F GV + V Q + FGF+ + AA A+ Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAV 286 Query: 541 Q 543 + Sbjct: 287 E 287 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/73 (36%), Positives = 45/73 (61%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +++ +L V+D L FS Y + + ++VM N G SRG+GFV++ N +EA A+ Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVML-NPQGMSRGFGFVAYSNPEEALRAL 389 Query: 181 TEMTGKWLGSRQI 219 +EM GK +G + + Sbjct: 390 SEMNGKMIGRKPL 402
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 67.4 bits (163), Expect = 3e-11 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 6/184 (3%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+L V+ A L F + V++D +GRSRG+GFV+ ++E E A + Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSN--AAMEANQDTGSKENPE 360 G + R IR N A K+E + GG+S+ + N G Sbjct: 149 FNGYEIDGRAIRVNAGP---APAKRENSSFGG---GRGGNSSYGGGRDGNSSFGGARGGR 202 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEA 528 + VYVGNL V+ L F G +V ++ +GFGF+ YS+ E Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262 Query: 529 ALAI 540 AI Sbjct: 263 NDAI 266 Score = 59.7 bits (143), Expect = 5e-09 Identities = 31/76 (40%), Positives = 47/76 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG+LS V+D L FS + DA+V++D +GRSRG+GFV++ + +E AI Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268 Query: 187 MTGKWLGSRQIRCNWA 234 + G L R IR + A Sbjct: 269 LNGIDLDGRSIRVSAA 284
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 67.0 bits (162), Expect = 3e-11 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 3/181 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+ +L + +++ LY FS++ + +V D GRS+GYGFV F ++ A+ AI ++ Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +Q+ + + E+ AV P Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSES---GAV---------------------------P 222 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 FT VYV NL E+ DEL + F G + V Q + FGF+ + + AA+A+ Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282 Query: 541 Q 543 + Sbjct: 283 E 283 Score = 58.9 bits (141), Expect = 9e-09 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 3/183 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T ++V +L E+ D L F Y S A VM D ++G SR +GFV+F + + A A+ Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVE 283 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 +M G LG + A K + E++ L + GS Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEE---------LRRKFEQERISRFEKLQGSN----- 329 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE---KGFGFIRYSTHGEAAL 534 +Y+ NL VN ++L F G +V + + +GFGF+ YS EA L Sbjct: 330 ------LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALL 383 Query: 535 AIQ 543 A++ Sbjct: 384 AMK 386 Score = 57.0 bits (136), Expect = 3e-08 Identities = 32/87 (36%), Positives = 49/87 (56%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G+ +++ +L VND L FS Y + + +VM N G SRG+GFV++ N +EA A+ Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMM-NSQGLSRGFGFVAYSNPEEALLAM 385 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQ 261 EM GK +G + + A EE+Q Sbjct: 386 KEMNGKMIGRKPLYV--ALAQRKEERQ 410 Score = 45.8 bits (107), Expect = 8e-05 Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL VN++ L F+ + RV D T RS GY +V+F N ++A A+ + Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 105 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + R IR M +N+D ++ + + N Sbjct: 106 NYAPIRDRPIR-------------------------------IMLSNRDPSTRLSGKGN- 133 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVR---VQQEKGFGFIRYSTHGEAALAI 540 V++ NL ++ L+ F + G +V V + KG+GF+++ A AI Sbjct: 134 ----VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAI 189
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 66.6 bits (161), Expect = 4e-11 Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ LY FS + + +V+ D S+GYGFV F Q+ AE AI +M Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G++ Sbjct: 159 NGMLLNDRKVFV-------------------------GRFKSRKEREAELGARAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ---QEKGFGFIRYSTHGEAALAI 540 +FT VY+ N G ++N + L F G +V + KGFGF+ + H +A A+ Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAV 248 Score = 65.1 bits (157), Expect = 1e-10 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 4/183 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + ++ND L F Y +VM D+ G+S+G+GFVSF ++A+ A+ Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVD 249 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 EM GK + + + A K E + E + QD ++ N Sbjct: 250 EMNGKDMNGKSMFVGRAQK-KVERQTEL-------------KRKFEQMKQDRITRYQGVN 295 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEAA 531 +YV NL ++ + L + F L G I +V E KGFGF+ +S+ EA Sbjct: 296 ------LYVKNLDDGIDDERLRKEF--LPFGTITSAKVMMEGGRSKGFGFVCFSSPEEAT 347 Query: 532 LAI 540 A+ Sbjct: 348 KAV 350 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/88 (32%), Positives = 43/88 (48%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS RV D T RS GY +V+F+ +AE A+ M Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + R +R W+ + + K N Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGN 100 Score = 50.1 bits (118), Expect = 4e-06 Identities = 26/92 (28%), Positives = 50/92 (54%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L F + + + A+VM + GRS+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNH 276 TEM G+ + ++ + A + + T+ + Sbjct: 351 TEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 66.6 bits (161), Expect = 4e-11 Identities = 33/84 (39%), Positives = 52/84 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L+ E N+ L F+ Y S+ V+ D +T RSRG+GFV+F N +A+ A+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 187 MTGKWLGSRQIRCNWATKTNAEEK 258 M GK + RQIR + A K++ E + Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERR 89
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 66.2 bits (160), Expect = 6e-11 Identities = 34/80 (42%), Positives = 51/80 (63%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG LS + N+ +L FS Y S+ V+ D +T RSRG+GFV+F N +A+ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 187 MTGKWLGSRQIRCNWATKTN 246 M GK + RQIR + A K++ Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 ++VG L + N L + F G V +++ Q+ +GFGF+ + +A Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 66.2 bits (160), Expect = 6e-11 Identities = 34/80 (42%), Positives = 51/80 (63%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG LS + N+ +L FS Y S+ V+ D +T RSRG+GFV+F N +A+ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 187 MTGKWLGSRQIRCNWATKTN 246 M GK + RQIR + A K++ Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 ++VG L + N L + F G V +++ Q+ +GFGF+ + +A Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 66.2 bits (160), Expect = 6e-11 Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 6/185 (3%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+L V+ A L F + + V++D TGRSRG+GFV+ + E E A + Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 G L R +R N + D + ++ GSS + +G+ Sbjct: 152 FNGYELDGRPLRVN----AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSG---- 203 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRV------QQEKGFGFIRYSTHGEA 528 VYVGNL V+ L F G + E RV + KGFGF+ Y + E Sbjct: 204 ---NRVYVGNLSWGVDDMALESLFSE--QGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258 Query: 529 ALAIQ 543 AI+ Sbjct: 259 QNAIK 263 Score = 65.9 bits (159), Expect = 7e-11 Identities = 33/78 (42%), Positives = 50/78 (64%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G R++VG+LS V+D L + FS +ARV++D +GRS+G+GFV++ + QE + AI Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262 Query: 181 TEMTGKWLGSRQIRCNWA 234 + G L RQIR + A Sbjct: 263 KSLDGADLDGRQIRVSEA 280
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 65.9 bits (159), Expect = 7e-11 Identities = 34/80 (42%), Positives = 50/80 (62%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG LS + N+ L FS Y S+ V+ D +T RSRG+GFV+F N +A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 187 MTGKWLGSRQIRCNWATKTN 246 M GK + RQIR + A K++ Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 ++VG L + N L + F G V +++ Q+ +GFGF+ + +A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 65.9 bits (159), Expect = 7e-11 Identities = 34/80 (42%), Positives = 50/80 (62%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG LS + N+ L FS Y S+ V+ D +T RSRG+GFV+F N +A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 187 MTGKWLGSRQIRCNWATKTN 246 M GK + RQIR + A K++ Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 ++VG L + N L + F G V +++ Q+ +GFGF+ + +A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 65.9 bits (159), Expect = 7e-11 Identities = 34/80 (42%), Positives = 50/80 (62%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG LS + N+ L FS Y S+ V+ D +T RSRG+GFV+F N +A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 187 MTGKWLGSRQIRCNWATKTN 246 M GK + RQIR + A K++ Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 ++VG L + N L + F G V +++ Q+ +GFGF+ + +A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L F + +VM D ++G+S+G+GFVSF ++A+ A+ Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 EM GK L +QI A K E + E + QD ++ N Sbjct: 250 EMNGKELNGKQIYVGRAQK-KVERQTEL-------------KRKFEQMKQDRITRYQGVN 295 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHGEAALA 537 +YV NL ++ + L + F G +V ++ + KGFGF+ +S+ EA A Sbjct: 296 ------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349 Query: 538 I 540 + Sbjct: 350 V 350 Score = 65.5 bits (158), Expect = 1e-10 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ LY FS + + +V+ D S+GYGFV F Q+ AE AI +M Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G++ Sbjct: 159 NGMLLNDRKVFV-------------------------GRFKSRKEREAELGARAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ + L F G +V + KGFGF+ + H +A A+ Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248 Score = 52.8 bits (125), Expect = 6e-07 Identities = 35/123 (28%), Positives = 60/123 (48%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L FS + + + A+VM + GRS+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 TEM G+ + ++ + A+ K+E H +N M+ + NP Sbjct: 351 TEMNGRIVATKPLYV-----ALAQRKEERQAH---------LTNQYMQRMASVRAVPNPV 396 Query: 361 NNP 369 NP Sbjct: 397 INP 399 Score = 50.1 bits (118), Expect = 4e-06 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS RV D T RS GY +V+F+ +AE A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + +R W+ + + K N Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN-------------------------------- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ--EKGFGFIRYSTHGEAALAIQ 543 +++ NL ++ L+ F G +V + KG+GF+ + T A AI+ Sbjct: 101 ----IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 65.5 bits (158), Expect = 1e-10 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L F + +VM D ++G+S+G+GFVSF ++A+ A+ Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 EM GK L +QI A K E + E + QD ++ N Sbjct: 250 EMNGKELNGKQIYVGRAQK-KVERQTEL-------------KRKFEQMKQDRITRYQGVN 295 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHGEAALA 537 +YV NL ++ + L + F G +V ++ + KGFGF+ +S+ EA A Sbjct: 296 ------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKA 349 Query: 538 I 540 + Sbjct: 350 V 350 Score = 65.5 bits (158), Expect = 1e-10 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ LY FS + + +V+ D S+GYGFV F Q+ AE AI +M Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G++ Sbjct: 159 NGMLLNDRKVFV-------------------------GRFKSQKEREAELGARAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ + L F G +V + KGFGF+ + H +A A+ Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248 Score = 52.8 bits (125), Expect = 6e-07 Identities = 35/123 (28%), Positives = 60/123 (48%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L FS + + + A+VM + GRS+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 TEM G+ + ++ + A+ K+E H +N M+ + NP Sbjct: 351 TEMNGRIVATKPLYV-----ALAQRKEERQAH---------LTNQYMQRMASVRAVPNPV 396 Query: 361 NNP 369 NP Sbjct: 397 INP 399 Score = 50.1 bits (118), Expect = 4e-06 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS RV D T RS GY +V+F+ +AE A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + +R W+ + + K N Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN-------------------------------- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ--EKGFGFIRYSTHGEAALAIQ 543 +++ NL ++ L+ F G +V + KG+GF+ + T A AI+ Sbjct: 101 ----IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 65.1 bits (157), Expect = 1e-10 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 3/181 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+ +L +++ LY FS + + +V+ D S+GY FV F Q+ A+ AI +M Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G+K Sbjct: 159 NGMLLNDRKVFV-------------------------GRFKSRKEREAELGAKAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ---QEKGFGFIRYSTHGEAALAI 540 +FT VY+ N G EV+ + L F G +V + KGFGF+ Y H +A A+ Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248 Query: 541 Q 543 + Sbjct: 249 E 249 Score = 62.8 bits (151), Expect = 6e-10 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 5/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + EV+D +L FS + +VM D G+S+G+GFVS+ ++A A+ Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249 Query: 184 EMTGKWLGSRQI---RCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKEN 354 EM GK + + I R + AE K++ + + Q+ S+ Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFE-----------------QLKQERISRYQ 292 Query: 355 PENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHGEA 528 N +Y+ NL ++ ++L + F G +V ++ + KGFGF+ +S+ EA Sbjct: 293 GVN------LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEA 346 Query: 529 ALAI 540 A+ Sbjct: 347 TKAV 350 Score = 56.6 bits (135), Expect = 4e-08 Identities = 29/92 (31%), Positives = 53/92 (57%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +++ +L ++D L FS + S + A+VM ++ GRS+G+GFV F + +EA A+ Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNH 276 TEM G+ +GS+ + A + + T+ + Sbjct: 351 TEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/88 (34%), Positives = 44/88 (50%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL S+V +A LY FS RV D T RS GY +V+F+ +AE A+ M Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + IR W+ + + K N Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGN 100
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 65.1 bits (157), Expect = 1e-10 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 7/186 (3%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L F + +VM D ++G+S+G+GFVSF ++A+ A+ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 184 EMTGKWLGSRQIRCNWATK-----TNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSK 348 EM GK L +QI A K T + K E + + G Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------------- 293 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHG 522 +YV NL ++ + L + F G +V ++ + KGFGF+ +S+ Sbjct: 294 ---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPE 344 Query: 523 EAALAI 540 EA A+ Sbjct: 345 EATKAV 350 Score = 64.7 bits (156), Expect = 2e-10 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ LY FS + + +V+ D S+GYGFV F Q+ AE AI +M Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G++ Sbjct: 159 NGMLLNDRKVFV-------------------------GRFKSRKEREAELGARAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ + L F G +V + KGFGF+ + H +A A+ Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248 Score = 52.8 bits (125), Expect = 6e-07 Identities = 35/123 (28%), Positives = 60/123 (48%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L FS + + + A+VM + GRS+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 TEM G+ + ++ + A+ K+E H +N M+ + NP Sbjct: 351 TEMNGRIVATKPLYV-----ALAQRKEERQAH---------LTNQYMQRMASVRAVPNPV 396 Query: 361 NNP 369 NP Sbjct: 397 INP 399 Score = 50.1 bits (118), Expect = 4e-06 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS RV D T RS GY +V+F+ +AE A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + +R W+ + + K N Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN-------------------------------- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ--EKGFGFIRYSTHGEAALAIQ 543 +++ NL ++ L+ F G +V + KG+GF+ + T A AI+ Sbjct: 101 ----IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 65.1 bits (157), Expect = 1e-10 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 7/186 (3%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L F + +VM D ++G+S+G+GFVSF ++A+ A+ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 184 EMTGKWLGSRQIRCNWATK-----TNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSK 348 EM GK L +QI A K T + K E + + G Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------------- 293 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHG 522 +YV NL ++ + L + F G +V ++ + KGFGF+ +S+ Sbjct: 294 ---------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPE 344 Query: 523 EAALAI 540 EA A+ Sbjct: 345 EATKAV 350 Score = 64.7 bits (156), Expect = 2e-10 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ LY FS + + +V+ D S+GYGFV F Q+ AE AI +M Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G++ Sbjct: 159 NGMLLNDRKVFV-------------------------GRFKSRKEREAELGARAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ + L F G +V + KGFGF+ + H +A A+ Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248 Score = 52.8 bits (125), Expect = 6e-07 Identities = 35/123 (28%), Positives = 60/123 (48%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L FS + + + A+VM + GRS+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 TEM G+ + ++ + A+ K+E H +N M+ + NP Sbjct: 351 TEMNGRIVATKPLYV-----ALAQRKEERQAH---------LTNQYMQRMASVRAVPNPV 396 Query: 361 NNP 369 NP Sbjct: 397 INP 399 Score = 50.1 bits (118), Expect = 4e-06 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS RV D T RS GY +V+F+ +AE A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + +R W+ + + K N Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN-------------------------------- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ--EKGFGFIRYSTHGEAALAIQ 543 +++ NL ++ L+ F G +V + KG+GF+ + T A AI+ Sbjct: 101 ----IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 156
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 64.7 bits (156), Expect = 2e-10 Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ LY FS + + +V+ D S+GYGFV F Q+ AE AI +M Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G++ Sbjct: 159 NGMLLNDRKVFV-------------------------GRFKSRKEREAELGARAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ---QEKGFGFIRYSTHGEAALAI 540 +FT VY+ N G +++ + L F G +V + +GFGF+ + H +A A+ Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAV 248 Score = 63.2 bits (152), Expect = 5e-10 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 9/188 (4%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ + +++D L F Y + +VM D+ G+SRG+GFVSF ++A+ A+ Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVD 249 Query: 184 EMTGKWLGSRQIRCNWATK-----TNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSK 348 +M GK L + I A K T + K E + + G Sbjct: 250 DMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------------- 293 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYST 516 +YV NL ++ + L + F G+I +V E KGFGF+ +S+ Sbjct: 294 ---------VNLYVKNLDDGIDDERLRKEF--TPFGSITSAKVMMEGGRSKGFGFVCFSS 342 Query: 517 HGEAALAI 540 EA A+ Sbjct: 343 PEEATKAV 350 Score = 52.4 bits (124), Expect = 8e-07 Identities = 27/92 (29%), Positives = 51/92 (55%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L F+ + S + A+VM + GRS+G+GFV F + +EA A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNH 276 TEM G+ + ++ + A + + T+ + Sbjct: 351 TEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/88 (31%), Positives = 43/88 (48%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS RV D T RS GY +V+F+ +AE A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + +R W+ + + K N Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 64.3 bits (155), Expect = 2e-10 Identities = 33/76 (43%), Positives = 47/76 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ DA L FS + D++++ D +TGRSRG+GFV+F++++ + AI E Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 187 MTGKWLGSRQIRCNWA 234 M GK L R I N A Sbjct: 67 MNGKELDGRTITVNEA 82
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 63.5 bits (153), Expect = 4e-10 Identities = 33/76 (43%), Positives = 45/76 (59%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ N+ TL F+ + D++V+ D +TGRSRG+GFV+F ++Q AI Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 187 MTGKWLGSRQIRCNWA 234 M GK L R I N A Sbjct: 69 MNGKELDGRNITVNQA 84
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 62.8 bits (151), Expect = 6e-10 Identities = 31/76 (40%), Positives = 47/76 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ ND +L FS + +D++++ D +TGRSRG+GFV+F++++ AI Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 187 MTGKWLGSRQIRCNWA 234 M G+ L R I N A Sbjct: 67 MNGQELDGRNITVNEA 82
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 62.8 bits (151), Expect = 6e-10 Identities = 31/76 (40%), Positives = 48/76 (63%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RI+VG++ +++DA L FS + ARV++D ++GRSRG+GFV+ ++ E AI Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 187 MTGKWLGSRQIRCNWA 234 + G+ L R IR N A Sbjct: 252 LDGQTLDGRTIRVNAA 267 Score = 47.0 bits (110), Expect = 4e-05 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 4/182 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+L +++ L F A V+++ +T RSRG+GFV+ +EA+ A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + L R + N A A + + + P Sbjct: 158 YSQYDLNGRLLTVNKA------------------------------APRGSRPERAPRTF 187 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEAAL 534 +YVGN+ +++ L + F G V +E +GFGF+ S+ E + Sbjct: 188 QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSE 247 Query: 535 AI 540 AI Sbjct: 248 AI 249 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Frame = +1 Query: 265 TDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYN 444 +++ N +VL + + G E + + ++VGNL ++++ + L + F Sbjct: 60 SEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQ 119 Query: 445 LGVGAIEEVRVQQE----KGFGFIRYSTHGEAALAIQM 546 GV I EV +E +GFGF+ ST EA A+++ Sbjct: 120 AGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 62.8 bits (151), Expect = 6e-10 Identities = 32/76 (42%), Positives = 47/76 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RI+VG++ ++DA L FS + ARV++D +TGRSRG+GFV+ ++ E AI Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 187 MTGKWLGSRQIRCNWA 234 + G+ L R IR N A Sbjct: 291 LDGQSLDGRTIRVNVA 306 Score = 48.1 bits (113), Expect = 2e-05 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 4/100 (4%) Frame = +1 Query: 259 QETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHF 438 +ET+ V + +EA+++ + P P+ ++VGNL ++V+ + L R F Sbjct: 100 EETEEEGFVEAVGDAGESDEVEADEEEEEFQEP---PEDAKLFVGNLPYDVDSEGLARLF 156 Query: 439 YNLGVGAIEEV----RVQQEKGFGFIRYSTHGEAALAIQM 546 GV I EV Q +GFGF+ ST EA A++M Sbjct: 157 EQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Score = 43.5 bits (101), Expect = 4e-04 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 8/186 (4%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+L +V+ L F A V+++ T +SRG+GFV+ +EAE A+ E Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAV-E 195 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 M ++ + N +LT N+ E PE Sbjct: 196 MYNRY-----------------------DVNGRLLT----------VNKAARRGERPERP 222 Query: 367 P----DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHG 522 P +YVGN+ ++ L + F G V +E +GFGF+ ++ Sbjct: 223 PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282 Query: 523 EAALAI 540 E + AI Sbjct: 283 EMSDAI 288
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 62.8 bits (151), Expect = 6e-10 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 2/179 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +++ + +++D L F + +VM D ++G+S+G+GFVSF ++A+ A+ EM Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 GK L +QI A K E + E + QD ++ N Sbjct: 252 NGKELNGKQIYVGRAQK-KVERQTEL-------------KRTFEQMKQDRITRYQVVN-- 295 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ--QEKGFGFIRYSTHGEAALAI 540 +YV NL ++ + L + F G +V ++ + KGFGF+ +S+ EA A+ Sbjct: 296 ----LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350 Score = 59.7 bits (143), Expect = 5e-09 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IFV +L +N+ LY S + + V+ D S+GYGFV F + AE AI +M Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L R++ G + E + G++ Sbjct: 159 NGMLLNGRKVFV-------------------------GQFKSRKEREAELGARAK----- 188 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 +F VY+ N G +++ + L F G +V + KGFGF+ + H +A A+ Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/84 (33%), Positives = 49/84 (58%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V +L ++D L FS + + + A+VM + GRS+G+GFV F + +EA A+TEM Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQ 261 G+ + ++ + A EE+Q Sbjct: 354 NGRIVATKPLYV--ALAQRKEERQ 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 2/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V +A LY FS R+ D T S Y +V+F++ ++AE A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + + +R W+ + + K N Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN-------------------------------- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE--KGFGFIRYSTHGEAALAIQ 543 ++V NL +N L+ G V + KG+GF+ + TH A AI+ Sbjct: 101 ----IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIK 156
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 62.8 bits (151), Expect = 6e-10 Identities = 32/78 (41%), Positives = 48/78 (61%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G R++VG+LS V+D L F+ +ARV++D +GRS+G+GFV+ + QE + AI Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315 Query: 181 TEMTGKWLGSRQIRCNWA 234 + G L RQIR + A Sbjct: 316 NSLNGADLDGRQIRVSEA 333 Score = 52.0 bits (123), Expect = 1e-06 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+LS V+ A L F + + V++D TGRSRG+GFV+ E E A + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 187 MTGKWLGSRQIRCN 228 G R +R N Sbjct: 160 FNGYEFEGRPLRVN 173 Score = 32.3 bits (72), Expect = 0.89 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +1 Query: 334 DTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGF 501 D+ E +PD ++VGNL V+ +L + F + G V I + + +GFGF Sbjct: 86 DSAPVERNSFSPDLK-LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144 Query: 502 IRYSTHGEAALAIQ 543 + ST E A Q Sbjct: 145 VTMSTAAEVEAAAQ 158 Score = 30.8 bits (68), Expect = 2.6 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 6/87 (6%) Frame = +1 Query: 298 GGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRV 477 GGS ++ + +GS N +YVGNL V+ L F G + E RV Sbjct: 236 GGSQRSSYGSGSGSGSGSGSGNR-----LYVGNLSWGVDDMALENLFNEQG--KVVEARV 288 Query: 478 ------QQEKGFGFIRYSTHGEAALAI 540 + KGFGF+ S+ E AI Sbjct: 289 IYDRDSGRSKGFGFVTLSSSQEVQKAI 315
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 62.4 bits (150), Expect = 8e-10 Identities = 32/76 (42%), Positives = 46/76 (60%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ ND L FS + D++++ D ++GRSRG+GFV+F++++ AI E Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 187 MTGKWLGSRQIRCNWA 234 M GK L R I N A Sbjct: 67 MNGKELDGRVITVNEA 82
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/77 (40%), Positives = 49/77 (63%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T++++G LS ++ +L FS++ ++ARVM + TGRSRGYGFV+F ++ A +AI+ Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90 Query: 184 EMTGKWLGSRQIRCNWA 234 M G+ L I N A Sbjct: 91 AMNGQELNGFNISVNVA 107
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 62.0 bits (149), Expect = 1e-09 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 5/184 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG++ +N+ L + + A VM+D +GRSR +GFV+ + ++A I + Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + +G R+I+ N K G A +A +D+ E+P Sbjct: 145 LNDTEIGGRKIKVNITEKPLE-----------------GMDIATTQA-EDSQFVESPYK- 185 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYN-----LGVGAIEEVRVQQEKGFGFIRYSTHGEAA 531 VY+GNL V +EL + F++ LG + GFGF+ +S+ E Sbjct: 186 -----VYIGNLAKTVT-NELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 239 Query: 532 LAIQ 543 AIQ Sbjct: 240 AAIQ 243 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++++G+L+ V + L FS A+V T +S G+GFVSF +++E E AI Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 187 MTGKWLGSRQIRCNWA 234 + L ++IR N A Sbjct: 245 LNNSVLEGQKIRVNKA 260 Score = 32.7 bits (73), Expect = 0.68 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Frame = +1 Query: 280 AVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGA 459 AVV SS+ A ++ G++ +YVGN+ +N DEL G Sbjct: 62 AVVTEETSSSSTASSSSDGEGARR----------LYVGNIPRNLNNDELRTIVEEHGAIE 111 Query: 460 IEEVRVQQEKG----FGFIRYSTHGEAALAIQ 543 I EV + G FGF+ T +A I+ Sbjct: 112 IAEVMYDKYSGRSRRFGFVTMKTVEDANAVIE 143
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 61.6 bits (148), Expect = 1e-09 Identities = 60/238 (25%), Positives = 90/238 (37%), Gaps = 58/238 (24%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T ++VGDL V D+ L+ F + RV D T RS GYG+V+F N Q+A AI Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEK-----------QETDNHNA---------------V 285 E+ L + IR ++ + + + E+ +H A V Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKV 155 Query: 286 VLTNGGSSNA---AMEANQDTGSK--------------------------ENPENNPDFT 378 + + G S AN+++ K ++ N FT Sbjct: 156 AVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFT 215 Query: 379 TVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE---KGFGFIRYSTHGEAALAIQ 543 VYV NL D+L F G V E KGFGF+ + +AA A++ Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVE 273 Score = 51.2 bits (121), Expect = 2e-06 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 3/182 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T ++V +L+ D L F Y + A VM D + G+S+G+GFV+F N +A A+ Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G ++ W A++K E + V E N + + + Sbjct: 274 SLNGHKFDDKE----WYV-GRAQKKSERETELRV----------RYEQNLKEAADKFQSS 318 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ---QEKGFGFIRYSTHGEAAL 534 N +YV NL ++ ++L F G +V KG GF+ ++T EA Sbjct: 319 N-----LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATE 373 Query: 535 AI 540 A+ Sbjct: 374 AM 375 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/72 (30%), Positives = 44/72 (61%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 + ++V +L ++D L FS + + + ++VM D G S+G GFV+F +EA A++ Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376 Query: 184 EMTGKWLGSRQI 219 +++GK + S+ + Sbjct: 377 QLSGKMIESKPL 388 Score = 31.6 bits (70), Expect = 1.5 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Frame = +1 Query: 292 TNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGA 459 T GS+ A A +G + T++YVG+L V +L F +G V Sbjct: 10 TPNGSTAAVTSAPATSGGATATQFGN--TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRV 67 Query: 460 IEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 ++ ++ G+G++ ++ +AA AIQ Sbjct: 68 CRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/76 (40%), Positives = 46/76 (60%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ +D L FS Y D++++ D +TGRSRG+GFV+F++++ + AI Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 187 MTGKWLGSRQIRCNWA 234 M G+ L R I N A Sbjct: 69 MNGQDLDGRSITVNEA 84
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 60.8 bits (146), Expect = 2e-09 Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +++G + + + + S + ++M+D +TGRS+GY F+ FR+ + + +A+ + Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 190 TGKWLGSRQIRCNWATKTNAE--EKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 G LGSR ++C +++ ++ +Q+ +N + NG ++N G+ N N Sbjct: 80 NGYQLGSRFLKCGYSSNSDISGVSQQQQQQYNNI---NGNNNN--------NGNNNNNSN 128 Query: 364 NPDF 375 PDF Sbjct: 129 GPDF 132 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Frame = +1 Query: 328 NQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGF 495 N+ +G +NNP VY+G++ ++ +++ N+G + + + + + KG+ Sbjct: 2 NRQSGVNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY 61 Query: 496 GFIRYSTHGEAALAIQ 543 FI + +A A++ Sbjct: 62 AFIEFRDLESSASAVR 77
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 60.5 bits (145), Expect = 3e-09 Identities = 29/82 (35%), Positives = 48/82 (58%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L++E N+ L A F Y + +M D +T +SRG+ FV+F + +A+ A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 187 MTGKWLGSRQIRCNWATKTNAE 252 M GK L + I+ ATK + E Sbjct: 69 MNGKSLDGKAIKVEQATKPSFE 90
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 60.5 bits (145), Expect = 3e-09 Identities = 31/76 (40%), Positives = 48/76 (63%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG+L +V++ L FS + +ARV++D +TGRSRG+GFV+ + E AI+ Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 187 MTGKWLGSRQIRCNWA 234 + G+ L R IR N A Sbjct: 305 LDGQNLEGRAIRVNVA 320 Score = 53.5 bits (127), Expect = 4e-07 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 6/184 (3%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+L+ +VN L F + A V+++ +T +SRG+GFV+ + EAETA+ + Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 L R + N A A + + + P Sbjct: 211 FNRYDLNGRLLTVNKA------------------------------APRGSRPERAPRVY 240 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRV------QQEKGFGFIRYSTHGEA 528 VYVGNL +V+ L + F G + E RV + +GFGF+ S E Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSE--HGKVVEARVVYDRETGRSRGFGFVTMSDVDEL 298 Query: 529 ALAI 540 AI Sbjct: 299 NEAI 302 Score = 38.5 bits (88), Expect = 0.012 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Frame = +1 Query: 289 LTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEE 468 ++ G S + + E PE + + ++VGNL ++VN L F G I E Sbjct: 122 VSEGDESEGDVSEGAVSERAEFPEPSEE-AKLFVGNLAYDVNSQALAMLFEQAGTVEIAE 180 Query: 469 V----RVQQEKGFGFIRYSTHGEAALAIQ 543 V Q +GFGF+ S+ EA A++ Sbjct: 181 VIYNRETDQSRGFGFVTMSSVDEAETAVE 209
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 59.7 bits (143), Expect = 5e-09 Identities = 31/76 (40%), Positives = 45/76 (59%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ ++ +L F++Y D++V+ D +TGRSRG+GFV+F ++ AI Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 187 MTGKWLGSRQIRCNWA 234 M GK L R I N A Sbjct: 69 MNGKELDGRNITVNQA 84
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/76 (39%), Positives = 46/76 (60%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG+L +V+ + L FS + ARV+ D +TGRSRG+GFV+ ++ E AI Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209 Query: 187 MTGKWLGSRQIRCNWA 234 + G+ L R +R N A Sbjct: 210 LDGQTLDGRAVRVNVA 225 Score = 57.4 bits (137), Expect = 3e-08 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG+L +V+ L F A V+++ +T RSRG+GFV+ +EAE A+ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + G + RQ+ N A GS A + + + Sbjct: 116 LNGYDMDGRQLTVNKAAPR-------------------GSPERAPRGDFEPSCR------ 150 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAAL 534 VYVGNL +V+ L + F G + + + +GFGF+ S+ E Sbjct: 151 -----VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205 Query: 535 AI 540 AI Sbjct: 206 AI 207 Score = 41.6 bits (96), Expect = 0.001 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Frame = +1 Query: 241 TNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRD 420 TNA + E+D AV + G + + E + G + P+ ++VGNL ++V+ + Sbjct: 14 TNAVLEGESDPEGAV--SWGSETQVSDEGGVEGG--QGFSEPPEEAKLFVGNLPYDVDSE 69 Query: 421 ELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEAALAIQM 546 +L F GV I EV +E +GFGF+ ST EA A+++ Sbjct: 70 KLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/76 (39%), Positives = 46/76 (60%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ +D L F+ Y D++++ D +TGRSRG+GFV+F++++ + AI Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 187 MTGKWLGSRQIRCNWA 234 M G+ L R I N A Sbjct: 69 MNGQDLDGRSITVNEA 84
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 59.3 bits (142), Expect = 7e-09 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 3/181 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L ++++ LY FS + +++ D + G+S+G+GFV F + A+ AI + Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 185 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G +L NG A ++ + E Sbjct: 186 NG------------------------------MLLNGQEIYVAPHLSRKERDSQLEETKA 215 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLG---VGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 +T +YV N+ E ++ F G ++E+ + KGFGF+ Y H +A A+ Sbjct: 216 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 275 Query: 541 Q 543 + Sbjct: 276 E 276 Score = 52.4 bits (124), Expect = 8e-07 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL V++A LY FS S S RV D T S GY +V+F + + AI ++ Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 98 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + R R W+ + + K+ GS N Sbjct: 99 NYTPIKGRLCRIMWSQRDPSLRKK-------------GSGN------------------- 126 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 +++ NL +++ L+ F G ++ + KGFGF+ + G A AI Sbjct: 127 ----IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 182 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/87 (31%), Positives = 45/87 (51%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FV +L V+D L F+ Y + + A+VM + G+S+G+GFV F +EA AI Sbjct: 320 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAI 378 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQ 261 TE + + + + A + + Q Sbjct: 379 TEKNQQIVAGKPLYVAIAQRKDVRRSQ 405 Score = 44.7 bits (104), Expect = 2e-04 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 3/182 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T ++V +++SE D F+ + A + D G+ +G+GFV++ ++A A+ Sbjct: 218 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVE 276 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + L ++ A K N + A L Sbjct: 277 ALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGV--------------- 321 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRVQ--QEKGFGFIRYSTHGEAAL 534 ++V NL V+ ++L F G + + + +R + + KGFGF+ +ST EA Sbjct: 322 -----NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATK 376 Query: 535 AI 540 AI Sbjct: 377 AI 378
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 58.9 bits (141), Expect = 9e-09 Identities = 30/79 (37%), Positives = 48/79 (60%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L+ ++ L FS++ S+ V+ D +T RSRG+GF++F N + A A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 187 MTGKWLGSRQIRCNWATKT 243 M G+ L RQIR + A K+ Sbjct: 67 MNGESLDGRQIRVDHAGKS 85 Score = 33.1 bits (74), Expect = 0.52 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 ++VG L + L HF + G V +++ Q+ +GFGFI ++ A++A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 58.5 bits (140), Expect = 1e-08 Identities = 29/76 (38%), Positives = 47/76 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R FVG L+ ++ +L FS + D++++ D +TGRSRG+GFV+F++++ + AI Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 187 MTGKWLGSRQIRCNWA 234 M G+ L R I N A Sbjct: 69 MNGQDLDGRSITVNEA 84
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 58.5 bits (140), Expect = 1e-08 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 4/184 (2%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT + V L ++ D LYA F T + R+M D KTG S GY FV F ++ +A+ AI Sbjct: 84 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 143 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 + G + +++++ ++A GG E+ +D Sbjct: 144 KSLNGVTVRNKRLKVSYARP-------------------GG------ESIKD-------- 170 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 T +YV NL + DEL + F G + + + +G F+R++ EA Sbjct: 171 -----TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEA 225 Query: 529 ALAI 540 AI Sbjct: 226 QEAI 229
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 58.5 bits (140), Expect = 1e-08 Identities = 30/79 (37%), Positives = 48/79 (60%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L+ ++ L FS++ S+ V+ D +T RSRG+GF++F N + A A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 187 MTGKWLGSRQIRCNWATKT 243 M G+ L RQIR + A K+ Sbjct: 67 MNGESLDGRQIRVDHAGKS 85 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 ++VG L + L HF + G V +++ Q+ +GFGFI ++ A+ A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 58.5 bits (140), Expect = 1e-08 Identities = 28/82 (34%), Positives = 47/82 (57%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L++E N+ L A F Y + +M D +T +SRG+ FV+F + +A+ + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 187 MTGKWLGSRQIRCNWATKTNAE 252 M GK L + I+ ATK + E Sbjct: 69 MNGKSLDGKAIKVEQATKPSFE 90
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 57.8 bits (138), Expect = 2e-08 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ L+ FS + + +V+ D+ S+GY +V F + A AI M Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHM 165 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +RQ+ + ++ ++ + Sbjct: 166 NGVRLNNRQVYVG-----------------------------RFKFPEERAAEVRTRDRA 196 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGEAAL 534 FT V+V N+G +++ ++L F G E V+V ++ KGFGF+RY TH A Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYG--PTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 535 AI 540 A+ Sbjct: 255 AV 256 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV ++ +++D L F Y +V+ D +G+S+G+GFV + + A+ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 ++ GK + + + A++K E A + + ++ Sbjct: 258 DLHGKSIDGKVLYVG-----RAQKKIE---------------RLAELRRRFERLRLKEKS 297 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV--RVQQEKGFGFIRYSTHGEAALA 537 P +Y+ NL +N ++L F + G + +V V Q KGFG + +S+ EA A Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357 Query: 538 I 540 + Sbjct: 358 V 358 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G I++ +L +ND L FS++ S S A+VM + G+ +G+G V F + +EA A+ Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAV 358 Query: 181 TEMTGKWLGSRQI 219 EM G+ +GS+ + Sbjct: 359 DEMNGRIVGSKPL 371 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/88 (28%), Positives = 38/88 (43%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V + LY F R+ D T GYG+V+FR +AE A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + R W+ + K N Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN 107
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 57.8 bits (138), Expect = 2e-08 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ L+ FS + + +V+ D+ S+GY +V F + A AI M Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHM 165 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +RQ+ + ++ ++ + Sbjct: 166 NGVRLNNRQVYVG-----------------------------RFKFPEERAAEVRTRDRA 196 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGEAAL 534 FT V+V N+G +++ ++L F G E V+V ++ KGFGF+RY TH A Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYG--PTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 535 AI 540 A+ Sbjct: 255 AV 256 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV ++ +++D L F Y +V+ D +G+S+G+GFV + + A+ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 ++ GK + + + A++K E A + + ++ Sbjct: 258 DLHGKSIDGKVLYVG-----RAQKKIE---------------RLAELRRRFERLRLKEKS 297 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV--RVQQEKGFGFIRYSTHGEAALA 537 P +Y+ NL +N ++L F + G + +V V Q KGFG + +S+ EA A Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357 Query: 538 I 540 + Sbjct: 358 V 358 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G I++ +L +ND L FS++ S S A+VM + G+ +G+G V F + +EA A+ Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAV 358 Query: 181 TEMTGKWLGSRQI 219 EM G+ +GS+ + Sbjct: 359 DEMNGRIVGSKPL 371 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/88 (28%), Positives = 38/88 (43%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V + LY F R+ D T GYG+V+FR +AE A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + R W+ + K N Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN 107
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 57.8 bits (138), Expect = 2e-08 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ L+ FS + + +V+ D+ S+GY +V F + A AI M Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHM 165 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +RQ+ + ++ ++ + Sbjct: 166 NGVRLNNRQVYVG-----------------------------RFKFPEERAAEVRTRDRA 196 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGEAAL 534 FT V+V N+G +++ ++L F G E V+V ++ KGFGF+RY TH A Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYG--PTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 535 AI 540 A+ Sbjct: 255 AV 256 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV ++ +++D L F Y +V+ D +G+S+G+GFV + + A+ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 ++ GK + + + A++K E A + + ++ Sbjct: 258 DLHGKSIDGKVLYVG-----RAQKKIE---------------RLAELRRRFERLRLKEKS 297 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV--RVQQEKGFGFIRYSTHGEAALA 537 P +Y+ NL +N ++L F + G + +V V Q KGFG + +S+ EA A Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357 Query: 538 I 540 + Sbjct: 358 V 358 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G I++ +L +ND L FS++ S S A+VM + G+ +G+G V F + +EA A+ Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAV 358 Query: 181 TEMTGKWLGSRQI 219 EM G+ +GS+ + Sbjct: 359 DEMNGRVVGSKPL 371 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/88 (28%), Positives = 38/88 (43%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V + LY F R+ D T GYG+V+FR +AE A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + R W+ + K N Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN 107
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 57.8 bits (138), Expect = 2e-08 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ L+ FS + + +V+ D+ S+GY +V F + A AI M Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHM 165 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +RQ+ + ++ ++ + Sbjct: 166 NGVRLNNRQVYVG-----------------------------RFKFPEERAAEVRTRDRA 196 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGEAAL 534 FT V+V N+G +++ ++L F G E V+V ++ KGFGF+RY TH A Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYG--PTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 535 AI 540 A+ Sbjct: 255 AV 256 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV ++ +++D L F Y +V+ D +G+S+G+GFV + + A+ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 ++ GK + + + A++K E A + + ++ Sbjct: 258 DLHGKSIDGKVLYVG-----RAQKKIE---------------RLAELRRRFERLRLKEKS 297 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV--RVQQEKGFGFIRYSTHGEAALA 537 P +Y+ NL +N ++L F + G + +V V Q KGFG + +S+ EA A Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357 Query: 538 I 540 + Sbjct: 358 V 358 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G I++ +L +ND L FS++ S S A+VM + G+ +G+G V F + +EA A+ Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAV 358 Query: 181 TEMTGKWLGSRQI 219 EM G+ +GS+ + Sbjct: 359 DEMNGRIVGSKPL 371 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/88 (28%), Positives = 38/88 (43%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V + LY F R+ D T GYG+V+FR +AE A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + R W+ + K N Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN 107
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 57.8 bits (138), Expect = 2e-08 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ L+ FS + + +V+ D+ S+GY +V F + A AI M Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHM 165 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +RQ+ + ++ ++ + Sbjct: 166 NGVRLNNRQVYVG-----------------------------RFKFPEERAAEVRTRDRA 196 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGEAAL 534 FT V+V N+G +++ ++L F G E V+V ++ KGFGF+RY TH A Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYG--PTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 535 AI 540 A+ Sbjct: 255 AV 256 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV ++ +++D L F Y +V+ D +G+S+G+GFV + + A+ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 ++ GK + + + A++K E A + + ++ Sbjct: 258 DLHGKSIDGKVLYVG-----RAQKKIE---------------RLAELRRRFERLRLKEKS 297 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV--RVQQEKGFGFIRYSTHGEAALA 537 P +Y+ NL +N ++L F + G + +V V Q KGFG + +S+ EA A Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357 Query: 538 I 540 + Sbjct: 358 V 358 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G I++ +L +ND L FS++ S S A+VM + G+ +G+G V F + +EA A+ Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAV 358 Query: 181 TEMTGKWLGSRQI 219 EM G+ +GS+ + Sbjct: 359 DEMNGRIVGSKPL 371 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/88 (28%), Positives = 38/88 (43%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V + LY F R+ D T GYG+V+FR +AE A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + R W+ + K N Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN 107
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 57.8 bits (138), Expect = 2e-08 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L +++ L+ FS + + +V+ D+ S+GY +V F + A AI M Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHM 165 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +RQ+ + ++ ++ + Sbjct: 166 NGVRLNNRQVYVG-----------------------------RFKFPEERAAEVRTRDRA 196 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGEAAL 534 FT V+V N+G +++ ++L F G E V+V ++ KGFGF+RY TH A Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYG--PTESVKVIRDASGKSKGFGFVRYETHEAAQK 254 Query: 535 AI 540 A+ Sbjct: 255 AV 256 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 2/181 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV ++ +++D L F Y +V+ D +G+S+G+GFV + + A+ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 ++ GK + + + A++K E A + + ++ Sbjct: 258 DLHGKSIDGKVLYVG-----RAQKKIE---------------RLAELRRRFERLRLKEKS 297 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV--RVQQEKGFGFIRYSTHGEAALA 537 P +Y+ NL +N ++L F + G + +V V Q KGFG + +S+ EA A Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKA 357 Query: 538 I 540 + Sbjct: 358 V 358 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G I++ +L +ND L FS++ S S A+VM + G+ +G+G V F + +EA A+ Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAV 358 Query: 181 TEMTGKWLGSRQI 219 EM G+ +GS+ + Sbjct: 359 DEMNGRIVGSKPL 371 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/88 (28%), Positives = 38/88 (43%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +V + LY F R+ D T GYG+V+FR +AE A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDN 273 + + R W+ + K N Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN 107
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 57.8 bits (138), Expect = 2e-08 Identities = 33/94 (35%), Positives = 52/94 (55%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V +L ++D L FS Y + + A+VM D + GRS+G+GFV F EA A+ Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAV 344 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNA 282 TE+ G+ +GS+ + A+ K+E H A Sbjct: 345 TELNGRVVGSKPLYV-----ALAQRKEERKAHLA 373 Score = 56.2 bits (134), Expect = 6e-08 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 3/182 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T ++V + + + +D L F Y + +VM + G+S+G+GFV+F + AE A+ Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQ 241 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + GK +G + + AE +QE + K+ Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEEL-------------------KQKRHE 282 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE---KGFGFIRYSTHGEAAL 534 + +YV NL ++ D L F G +V +E KGFGF+ ++ EA Sbjct: 283 SVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATC 342 Query: 535 AI 540 A+ Sbjct: 343 AV 344 Score = 52.8 bits (125), Expect = 6e-07 Identities = 55/238 (23%), Positives = 87/238 (36%), Gaps = 60/238 (25%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL +VN++ L+ FS+ RV D T RS GY +V+F+ +AE A+ M Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 190 TGKWLGSRQIRCNW----------------------------------------ATKTNA 249 + ++ IR W + K Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT 123 Query: 250 EEKQETDNHNAV-----------------VLTNGGSSNAAMEANQDTGSKENPENNPDFT 378 +EK + + V +L NG + KE E FT Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFT 183 Query: 379 TVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE---KGFGFIRYSTHGEAALAIQ 543 VYV N + + ++L F G +V +++ KGFGF+ + T A A+Q Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 57.4 bits (137), Expect = 3e-08 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 4/184 (2%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT + V L ++ D LYA F T + R+M D KTG S GY FV F ++ +A+ AI Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 160 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 + G + +++++ ++A GG E+ +D Sbjct: 161 KTVNGITVRNKRLKVSYARP-------------------GG------ESIKD-------- 187 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 T +YV NL + DEL + F G + + + +G F+R++ EA Sbjct: 188 -----TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEA 242 Query: 529 ALAI 540 AI Sbjct: 243 QEAI 246
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 57.0 bits (136), Expect = 3e-08 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 4/184 (2%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT + V L ++ D LY+ F T + R+M D KTG S GYGFV F ++ +A AI Sbjct: 77 GTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAI 136 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 + G + +++I+ ++A + E+ ++T+ Sbjct: 137 NNLNGITVRNKRIKVSFA-RPGGEQLRDTN------------------------------ 165 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEA 528 +YV NL + ++L F G + + +G FIR++ EA Sbjct: 166 -------LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEA 218 Query: 529 ALAI 540 AI Sbjct: 219 QEAI 222
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 56.6 bits (135), Expect = 4e-08 Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 3/181 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VGDL V + LY F+ + S + R+ D +GRS YG+ +F ++Q+A AI + Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 L + IR W+ + + N Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGN-------------------------------- 113 Query: 370 DFTTVYVGNLGHEVNR---DELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 V+V NL V ++ + F N+ + + + +G+GF+++ A AI Sbjct: 114 ----VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169 Query: 541 Q 543 Q Sbjct: 170 Q 170 Score = 50.4 bits (119), Expect = 3e-06 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 3/183 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ +L ++V++ L F+ + + D RGY FV+F N ++A A Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAE 259 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G GS+ + A K AE +Q + Q E + Sbjct: 260 TVNGTKFGSKCLYVGRAQK-KAEREQ-------------------LLREQFKEKHEEQKM 299 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE---KGFGFIRYSTHGEAAL 534 + +YV N+ V +EL +HF G ++ ++ KGFGF+ +ST EA Sbjct: 300 IAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359 Query: 535 AIQ 543 A++ Sbjct: 360 AVK 362 Score = 38.9 bits (89), Expect = 0.010 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 3/181 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV +L V +A L F + + +V + G+SRGYGFV F + A AI + Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + ++I K K E Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPE----------------------------------E 198 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLG---VGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 +T +Y+ NL +V+ D L F G AI + + +G+ F+ + +A A Sbjct: 199 KYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258 Query: 541 Q 543 + Sbjct: 259 E 259 Score = 37.4 bits (85), Expect = 0.028 Identities = 27/106 (25%), Positives = 49/106 (46%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 + I+V +++ V + L FS + + ++M D K G+S+G+GFV F +EA A+ Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVK 362 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAM 321 G+ + + A K + Q V SS+A++ Sbjct: 363 TFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASV 408
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 56.6 bits (135), Expect = 4e-08 Identities = 47/184 (25%), Positives = 67/184 (36%), Gaps = 4/184 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L TL + FS Y D +M D T +SRG+GFV F++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD--------PN 62 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 G L SR + N + T G + KE N Sbjct: 63 CVGTVLASR------------PHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTEN 110 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGA----IEEVRVQQEKGFGFIRYSTHGEAAL 534 ++VG + H EL +F GV I + Q+ +GFGFI + Sbjct: 111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170 Query: 535 AIQM 546 A+ M Sbjct: 171 AVNM 174
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 56.6 bits (135), Expect = 4e-08 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDA-RVMWDNKTGRSRGYGFVSFRNQQEAETA 177 G IF+G+L E+++ LY FS + ++M D TG S+GY F++F + ++ A Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158 Query: 178 ITEMTGKWLGSRQIRCNWATKTNAE 252 I M G++L +R I ++A K +++ Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSK 183 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 6/184 (3%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG L +V++ L+ F + + D TG+ +GYGFV F ++++A+ AI M Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 L + IR N A+ N N D G+ Sbjct: 75 NMIKLYGKPIRVNKASAHN--------------------------KNLDVGA-------- 100 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTHGEAA 531 +++GNL E++ L+ F GV ++ ++ ++ KG+ FI +++ + Sbjct: 101 ---NIFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASD 156 Query: 532 LAIQ 543 AI+ Sbjct: 157 AAIE 160
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 56.2 bits (134), Expect = 6e-08 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+GDL V + TL F YPS A+V D+ T +S G+G+++F +++EAE A+ E+ Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 190 TGKWLGSRQIR 222 + ++IR Sbjct: 153 NYTKVNGKEIR 163
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 56.2 bits (134), Expect = 6e-08 Identities = 27/78 (34%), Positives = 45/78 (57%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L++E N+ L A F Y + +M D +T +SRG+ FV+ + +A+ A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 187 MTGKWLGSRQIRCNWATK 240 M GK L + I+ ATK Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/87 (32%), Positives = 48/87 (55%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +F+ +L EV+D L A FS + + + A++M D + G+S+G+GFV + +EA A+ Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQ 261 TEM + L + + A + Q Sbjct: 422 TEMNQRMLAGKPLYVALAQRKEVRRSQ 448 Score = 55.8 bits (133), Expect = 8e-08 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 3/180 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+ +L +++ L+ FS + +V D + G ++GYGFV F + + A AI + Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G L +++ + E+Q S A++AN Sbjct: 229 NGMLLNDKKVYV--GHHVSRRERQ--------------SKVEALKAN------------- 259 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRVQQEK--GFGFIRYSTHGEAALAI 540 FT VY+ NL E+ E F G + ++ V+ Q +K GFGF+ Y+ H A A+ Sbjct: 260 -FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318 Score = 55.8 bits (133), Expect = 8e-08 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 3/181 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG+L V +A L+ F++ + RV D T RS GY +V+F N ++ E A+ E+ Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + R R W+ + + K T N Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGN-------------------------------- 169 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ---EKGFGFIRYSTHGEAALAI 540 V++ NL ++ LH F G +V V + KG+GF+ + + A AI Sbjct: 170 ----VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225 Query: 541 Q 543 + Sbjct: 226 E 226 Score = 50.4 bits (119), Expect = 3e-06 Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 3/182 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +++ +L +E+ + F + + ++ D + + RG+GFV++ N + A+ A+ Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVD 319 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 E+ K +++ A K + E++ + + K N Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQM--------------------KLEKMN 359 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE---KGFGFIRYSTHGEAAL 534 +++ NL EV+ + L F G ++ ++ KGFGF+ Y+T EA Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANK 419 Query: 535 AI 540 A+ Sbjct: 420 AV 421
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 55.1 bits (131), Expect = 1e-07 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT + V L ++ D LYA F T + R+M D KTG S GY FV F + +++ AI Sbjct: 109 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAI 168 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 + G + +++++ ++A GG E+ +D Sbjct: 169 KSLNGITVRNKRLKVSYARP-------------------GG------ESIKD-------- 195 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYSTHGEA 528 T +YV NL + D+L F G+ + + + +G F+R++ EA Sbjct: 196 -----TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEA 250 Query: 529 ALAI 540 AI Sbjct: 251 QEAI 254
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 55.1 bits (131), Expect = 1e-07 Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 4/184 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L TL + FS Y D +M D T +SRG+GFV F++ T + Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL-- 68 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 A++ + + + D E Q +N ++N Sbjct: 69 ---------------ASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSN 113 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGA----IEEVRVQQEKGFGFIRYSTHGEAAL 534 ++VG + H EL +F GV I + Q+ +GFGFI + Sbjct: 114 ----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Query: 535 AIQM 546 A+ M Sbjct: 170 AVNM 173
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG++ E + L FS S R+++D +TG+ +GYGF +++Q+ A +A+ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 190 TGKWLGSRQIRC-NWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 G+ R +R N A++ N EE + AA + G +PE+ Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL-------------GPAAPIIDSPYGDPIDPEDA 124 Query: 367 PDFTTVYVGNLGHE 408 P+ T V +L E Sbjct: 125 PESITRAVASLPPE 138
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG++ E + L FS S R+++D +TG+ +GYGF +++Q+ A +A+ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 190 TGKWLGSRQIRC-NWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 G+ R +R N A++ N EE + AA + G +PE+ Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL-------------GPAAPIIDSPYGDPIDPEDA 124 Query: 367 PDFTTVYVGNLGHE 408 P+ T V +L E Sbjct: 125 PESITRAVASLPPE 138
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/90 (32%), Positives = 50/90 (55%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FVG+L V++ LY FS A + ++ GRS+GYGFVS+ + + A+ AI Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETD 270 M ++L ++ I ++A K + ++ D Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGKGERHGD 187
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 53.5 bits (127), Expect = 4e-07 Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 4/184 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L TL + FS Y D +M D T +SRG+GFV F++ T + Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 L R I T + ++ + + SK N Sbjct: 71 RP-HTLDGRNIDPKPCTPRGMQPERTR------------PKEGWQKGPRSDSSKSN---- 113 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGA----IEEVRVQQEKGFGFIRYSTHGEAAL 534 ++VG + H EL +F GV I + Q+ +GFGFI + Sbjct: 114 ----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Query: 535 AIQM 546 A+ M Sbjct: 170 AVNM 173
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 I+VG+LS +V++A L A F+ Y S ++ D +TGR RG+GFV E AI + Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 190 TG-KWLGSRQIRCNWA 234 G +W+G R ++ N A Sbjct: 63 DGAEWMG-RDLKVNKA 77 Score = 30.8 bits (68), Expect = 2.6 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Frame = +1 Query: 379 TVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTHGEAALAI 540 ++YVGNL ++V+ +L F G+++ V++ + +GFGF+ E AI Sbjct: 2 SIYVGNLSYDVSEADLTAVFAE--YGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAI 59 Query: 541 Q 543 + Sbjct: 60 E 60
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 53.1 bits (126), Expect = 5e-07 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG L+S D + +S + +D VM D T RSRG+GFV+F + E + A+ + Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + + + + D AV K E+N Sbjct: 84 -----------------RPHIIDGKTVDPKRAV----------------PRDDKNRSESN 110 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV----RVQQEKGFGFIRYSTH 519 +YV + + D L +F G E+ Q+ +GFGF+ + H Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDH 165 Score = 33.9 bits (76), Expect = 0.31 Identities = 23/112 (20%), Positives = 48/112 (42%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++V + + + L F+ Y + + + ++ D T + RG+GFV+F + + + + Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTG 342 + G RC+ K ++++ N T GG S + G Sbjct: 175 KSHMVNGH---RCD-VRKGLSKDEMSKAQMNRDRETRGGRSRDGQRGGYNGG 222
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 52.8 bits (125), Expect = 6e-07 Identities = 25/62 (40%), Positives = 39/62 (62%) Frame = +1 Query: 49 TLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCN 228 +L++ FSTY +++++ D +T RSRG+GFV+F ++ +AI M GK L R I N Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61 Query: 229 WA 234 A Sbjct: 62 EA 63
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 52.8 bits (125), Expect = 6e-07 Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 25/202 (12%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +++ L + + FS + ++RV+ D TG SRG F+ F + EAE AIT Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 190 TG-KWLGSRQ-IRCNWATKTNAEEKQETDNHNAVVLTN---------GGS---------- 306 G K GS + I +A N N N +L+ GG Sbjct: 168 NGHKPPGSSEPITVKFAANPN-------QNKNVALLSQLYHSPARRFGGPVHHQAQRFRF 220 Query: 307 SNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVR 474 S ++ P N +++ NLG + + L + F G V I + Sbjct: 221 SPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFN 280 Query: 475 VQQEKGFGFIRYSTHGEAALAI 540 + KGFGF+ + + EAA+AI Sbjct: 281 TNKCKGFGFVTMTNYEEAAMAI 302
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 52.8 bits (125), Expect = 6e-07 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG++ E + L FS R+++D +TG+ +GYGF +++Q+ A +A+ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 190 TGKWLGSRQIRC-NWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEA 327 G+ R +R N A++ N EE + V+ + G S + +A Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGESISPEDA 124
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 52.8 bits (125), Expect = 6e-07 Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 4/173 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG +S E+ + T+ F+ + + WD T + +G+ FV + + A+ A+ + Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 M G +G R I+ +N + Q+ + E E Sbjct: 191 MNGALMGGRNIKV--GRPSNMPQAQQVID-------------------------EVQEEA 223 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYS 513 F +YV ++ +++ +++ F G + + KG+GFI Y+ Sbjct: 224 KSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYA 276 Score = 33.5 bits (75), Expect = 0.40 Identities = 16/72 (22%), Positives = 34/72 (47%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RI+V + ++++ + + F + ++ +GYGF+ + N+Q + AI Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287 Query: 187 MTGKWLGSRQIR 222 M LG + +R Sbjct: 288 MNLFDLGGQLLR 299
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.8 bits (125), Expect = 6e-07 Identities = 28/82 (34%), Positives = 43/82 (52%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG L+ EV+D L+A F + +D ++ D +T + RG+ FV F ++A AI M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 190 TGKWLGSRQIRCNWATKTNAEE 255 L R IR N A +E Sbjct: 68 NESELFGRTIRVNLAKPMRIKE 89
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.8 bits (125), Expect = 6e-07 Identities = 28/82 (34%), Positives = 43/82 (52%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG L+ EV+D L+A F + +D ++ D +T + RG+ FV F ++A AI M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 190 TGKWLGSRQIRCNWATKTNAEE 255 L R IR N A +E Sbjct: 68 NESELFGRTIRVNLAKPMRIKE 89
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/78 (33%), Positives = 45/78 (57%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L+ E N+ L A F + S+ ++ D +T +SRG+ F++F N +A+ A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKD 67 Query: 187 MTGKWLGSRQIRCNWATK 240 M GK L + I+ A K Sbjct: 68 MNGKSLHGKAIKVEQAKK 85
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 52.0 bits (123), Expect = 1e-06 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 4/183 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L ++ D LYA F + R+M D KTG S GY FV F ++ +++ AI Sbjct: 127 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 186 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G + +++++ ++A GG E+ +D Sbjct: 187 VLNGITVRNKRLKVSYARP-------------------GG------ESIKD--------- 212 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAA 531 T +YV NL + D+L F G + + + +G F+RY+ EA Sbjct: 213 ----TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 268 Query: 532 LAI 540 AI Sbjct: 269 EAI 271
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 52.0 bits (123), Expect = 1e-06 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 4/183 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L ++ D LYA F + R+M D KTG S GY FV F ++ +++ AI Sbjct: 125 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 184 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G + +++++ ++A GG E+ +D Sbjct: 185 VLNGITVRNKRLKVSYARP-------------------GG------ESIKD--------- 210 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAA 531 T +YV NL + D+L F G + + + +G F+RY+ EA Sbjct: 211 ----TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 266 Query: 532 LAI 540 AI Sbjct: 267 EAI 269
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 52.0 bits (123), Expect = 1e-06 Identities = 24/76 (31%), Positives = 43/76 (56%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L+ E +A L+ F + + +++ D T + +GYGFVS N EA AI + Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 190 TGKWLGSRQIRCNWAT 237 G +G+R ++ ++ T Sbjct: 464 NGYTMGNRVLQVSFKT 479 Score = 33.1 bits (74), Expect = 0.52 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 42/223 (18%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWD--NKTGRSRGYGFVSFRNQQEAET 174 G ++V L + L A F+ + + +R++ + N T +++G GF+ F ++EA Sbjct: 247 GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDT-QTKGVGFIRFDKREEATR 305 Query: 175 AITEMTGKWLGS---------------------------------RQIRCNWATKTN--- 246 AI + G S R+I T N Sbjct: 306 AIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGL 365 Query: 247 AEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDEL 426 A + V+L NG + AA +G +++ NL E L Sbjct: 366 ARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPG-------GAYPIFIYNLAPETEEAAL 418 Query: 427 HRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 + F G V +++ Q KG+GF+ + + EAA+AI+ Sbjct: 419 WQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 461
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 52.0 bits (123), Expect = 1e-06 Identities = 24/76 (31%), Positives = 43/76 (56%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+ +L+ E +A L+ F + + +++ D T + +GYGFVS N EA AI + Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 190 TGKWLGSRQIRCNWAT 237 G +G+R ++ ++ T Sbjct: 500 NGYTMGNRVLQVSFKT 515 Score = 33.1 bits (74), Expect = 0.52 Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 42/223 (18%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWD--NKTGRSRGYGFVSFRNQQEAET 174 G ++V L + L A F+ + + +R++ + N T +++G GF+ F ++EA Sbjct: 283 GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDT-QTKGVGFIRFDKREEATR 341 Query: 175 AITEMTGKWLGS---------------------------------RQIRCNWATKTN--- 246 AI + G S R+I T N Sbjct: 342 AIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGL 401 Query: 247 AEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDEL 426 A + V+L NG + AA +G +++ NL E L Sbjct: 402 ARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPG-------GAYPIFIYNLAPETEEAAL 454 Query: 427 HRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 + F G V +++ Q KG+GF+ + + EAA+AI+ Sbjct: 455 WQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 497
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/78 (29%), Positives = 44/78 (56%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG L + + L F + ++M D++TGRS+GYGF++F + + A+ A+ + Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 187 MTGKWLGSRQIRCNWATK 240 + G L R ++ T+ Sbjct: 311 LNGFELAGRPMKVGHVTE 328 Score = 38.9 bits (89), Expect = 0.010 Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 6/184 (3%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F L++ + L FST D R++ D + RSRG +V F + AI Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI--- 211 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G R + + + EK AAM N GS Sbjct: 212 --GLTGQRVLGVPIIVQASQAEKNRA---------------AAMANNLQKGSAGP----- 249 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTHGEAA 531 +YVG+L + D L F G IE +++ + KG+GFI +S A Sbjct: 250 --MRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAK 305 Query: 532 LAIQ 543 A++ Sbjct: 306 KALE 309
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/78 (29%), Positives = 44/78 (56%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG L + + L F + ++M D++TGRS+GYGF++F + + A+ A+ + Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 187 MTGKWLGSRQIRCNWATK 240 + G L R ++ T+ Sbjct: 311 LNGFELAGRPMKVGHVTE 328 Score = 37.4 bits (85), Expect = 0.028 Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 6/184 (3%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F L++ + L FST D R++ D + RS+G +V F + AI Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI--- 211 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G R + + + EK AAM N GS Sbjct: 212 --GLTGQRVLGVPIIVQASQAEKNRA---------------AAMANNLQKGSAGP----- 249 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTHGEAA 531 +YVG+L + D L F G IE +++ + KG+GFI +S A Sbjct: 250 --MRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAK 305 Query: 532 LAIQ 543 A++ Sbjct: 306 KALE 309
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG++ E + L FS R+++D +TG+ +GYGF +++Q+ A +A+ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 190 TGKWLGSRQIRC-NWATKTNAEE 255 G+ R +R N A++ N EE Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG++ E + L FS R+++D +TG+ +GYGF +++Q+ A +A+ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 190 TGKWLGSRQIRC-NWATKTNAEE 255 G+ R +R N A++ N EE Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG++ E + L FS R+++D +TG+ +GYGF +++Q+ A +A+ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 190 TGKWLGSRQIRC-NWATKTNAEE 255 G+ R +R N A++ N EE Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 51.6 bits (122), Expect = 1e-06 Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 18/195 (9%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +++ L + + FS + ++RV+ D TG SRG F+ F + EAE AIT Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 190 TG-KWLGSRQ-IRCNWATKTNAEEKQE--TDNHNAVVLTNGGS----------SNAAMEA 327 G K GS + I +A N + + +++ GG S ++ Sbjct: 168 IGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDH 227 Query: 328 NQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGF 495 P N +++ NLG + + L + F G V I + + KGF Sbjct: 228 MSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGF 287 Query: 496 GFIRYSTHGEAALAI 540 GF+ + + E+A+AI Sbjct: 288 GFVTMTNYEESAMAI 302
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 51.2 bits (121), Expect = 2e-06 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 4/176 (2%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G R++VG+L + + L F+ + ++ +++D T RSRG+ FV+ + +EA+ AI Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 G +G R ++ N+ E++ +A + G ++P Sbjct: 173 RLFDGSQVGGRTVKVNFPEVPRGGEREVM---------------SAKIRSTYQGFVDSPH 217 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYN----LGVGAIEEVRVQQEKGFGFIRYST 516 +YV NL + L F + + I + + +GFGFI +S+ Sbjct: 218 K------LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSS 267 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +++V +LS + L F+ P A+V++D +GRSRG+GF++F + + +A+ Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 187 MTGKWLGSRQIRCNWA-------TKTNAEEKQETDNHNAVVLTN 297 M L R +R N A + E E D+ N+ +L++ Sbjct: 278 MNEVELEGRPLRLNVAGQKAPVSSPPVVETSPENDSDNSELLSS 321
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R++VG L + + L F + + +M D+ TGRS+GYGF++F + + A A+ + Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 187 MTGKWLGSRQIRCNWATK 240 + G L R +R T+ Sbjct: 324 LNGFELAGRPMRVGHVTE 341
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 50.4 bits (119), Expect = 3e-06 Identities = 32/98 (32%), Positives = 53/98 (54%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RIFVG +S + +A L FS Y + +++ D + G S+GYGFV+F +QEA+ + Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGYGFVTFETEQEAQR--LQ 90 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNG 300 G+ + R + N A K++ + ++V TNG Sbjct: 91 ADGECVVLRDRKLNIAPAI----KKQPNPLQSIVATNG 124
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/58 (43%), Positives = 35/58 (60%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETA 177 T+IFVG L DA+L F + +A V+ D +TG+SRGYGFV+ ++ AE A Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 48.9 bits (115), Expect = 9e-06 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L F + + +D VM D + RSRG+GFV++ + E + A+T Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K G E K+ ++ P + Sbjct: 75 RPHKVDG-----------RVVEPKRAVSREDS----------------------SRPGAH 101 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ----QEKGFGFIRYSTH 519 ++VG + + D L +F G + E+ +++GF F+ + H Sbjct: 102 LTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDH 156 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Frame = +1 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYST 516 E P +++G L E + L HF G + + ++ +GFGF+ Y + Sbjct: 5 EAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLS 64 Query: 517 HGEAALAI 540 E A+ Sbjct: 65 TDEVDAAM 72
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/58 (41%), Positives = 35/58 (60%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETA 177 T+IFVG L DA+L F + +A V+ D +TG+SRGYGFV+ ++ A+ A Sbjct: 32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRA 89
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 48.1 bits (113), Expect = 2e-05 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L + F + + +D VM D T RSRG+GFV++ +E + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K + R + A + E+ Q H V Sbjct: 74 RPHK-VDGRVVEPKRA--VSREDSQRPGAHLTV--------------------------- 103 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ----QEKGFGFIRYSTH 519 ++VG + + L +F G + E+ +++GF F+ + H Sbjct: 104 ---KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 155 Score = 34.3 bits (77), Expect = 0.23 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +1 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYST 516 E+P+ +++G L E + L HF G + + ++ +GFGF+ Y+T Sbjct: 4 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 63 Query: 517 HGEAALAI 540 E A+ Sbjct: 64 VEEVDAAM 71
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 48.1 bits (113), Expect = 2e-05 Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E + +L + + +D VM D + RSRG+GFV+F + E + A+ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-- 79 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 A + ++ + + + AV G A + + Sbjct: 80 ---------------AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK----------- 113 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRVQQ---EKGFGFIRYSTH 519 ++VG + + L +F G + IE + +Q ++GFGF+ + H Sbjct: 114 -----LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDH 163 Score = 36.6 bits (83), Expect = 0.047 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG + + + L F Y ++ D ++G+ RG+GFV+F + + + + Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 48.1 bits (113), Expect = 2e-05 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L + F + + +D VM D T RSRG+GFV++ +E + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K + R + A + E+ Q H V Sbjct: 74 RPHK-VDGRVVEPKRA--VSREDSQRPGAHLTV--------------------------- 103 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ----QEKGFGFIRYSTH 519 ++VG + + L +F G + E+ +++GF F+ + H Sbjct: 104 ---KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 155 Score = 34.3 bits (77), Expect = 0.23 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +1 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYST 516 E+P+ +++G L E + L HF G + + ++ +GFGF+ Y+T Sbjct: 4 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 63 Query: 517 HGEAALAI 540 E A+ Sbjct: 64 VEEVDAAM 71
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/85 (28%), Positives = 43/85 (50%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IFVG L E+ + + FS Y + ++ D KTG+S+G+ F+ + +Q+ A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQE 264 G + R IR + + A ++ E Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPQESE 122
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 48.1 bits (113), Expect = 2e-05 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L + F + + +D VM D T RSRG+GFV++ +E + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K + R + A + E+ Q H V Sbjct: 74 RPHK-VDGRVVEPKRA--VSREDSQRPGAHLTV--------------------------- 103 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ----QEKGFGFIRYSTH 519 ++VG + + L +F G + E+ +++GF F+ + H Sbjct: 104 ---KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 155 Score = 34.3 bits (77), Expect = 0.23 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +1 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYST 516 E+P+ +++G L E + L HF G + + ++ +GFGF+ Y+T Sbjct: 4 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 63 Query: 517 HGEAALAI 540 E A+ Sbjct: 64 VEEVDAAM 71
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 48.1 bits (113), Expect = 2e-05 Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L + F + + +D VM D T RSRG+GFV++ +E + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K + R + A + E+ Q H V Sbjct: 74 RPHK-VDGRVVEPKRA--VSREDSQRPGAHLTV--------------------------- 103 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ----QEKGFGFIRYSTH 519 ++VG + + L +F G + E+ +++GF F+ + H Sbjct: 104 ---KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 155 Score = 34.3 bits (77), Expect = 0.23 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +1 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYST 516 E+P+ +++G L E + L HF G + + ++ +GFGF+ Y+T Sbjct: 4 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 63 Query: 517 HGEAALAI 540 E A+ Sbjct: 64 VEEVDAAM 71
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 48.1 bits (113), Expect = 2e-05 Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 10/191 (5%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGR-----SRGYGFVSFRNQQE 165 G ++V +LS D L A F + AR+ R S GYGFV F++ Sbjct: 620 GATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDA 679 Query: 166 AETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGS 345 A TA M GK L + + +A + NAE + +++GGS Sbjct: 680 ARTAQKAMDGKVLDAHTLVVTFA-RRNAEA-------STTSISSGGS------------- 718 Query: 346 KENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRY 510 T + + NL E + ++ F + G ++ VR+ ++ +GFGF+ Y Sbjct: 719 ----------TKILIKNLPFEATKRDIRDLFSS--QGQLKSVRLPKKFDNTTRGFGFVEY 766 Query: 511 STHGEAALAIQ 543 ST EA A++ Sbjct: 767 STVREAQSAME 777 Score = 44.3 bits (103), Expect = 2e-04 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 +R+ V L S + DA L FS + +D ++M G SR +GFV +R++QEA+ A+ Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALD 60 Query: 184 EMTGKWLGSRQIRCNWATKTNAEE-----KQETDNHNAVVLTNGGSSNA-AMEANQDTGS 345 ++ + +I A K EE ++ + NA G +S + A + D Sbjct: 61 YFNRTFIDTSRISIELAKKIGDEELVHQREERRNRRNAGAGPEGSASTSDARKRKADKSD 120 Query: 346 KENPENN 366 + E + Sbjct: 121 TQQEEGS 127 Score = 34.3 bits (77), Expect = 0.23 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARV--MWDNKTGRSRGYGFVSFRNQQEAETA 177 T+I + +L E + FS+ R+ +DN T RG+GFV + +EA++A Sbjct: 719 TKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTT---RGFGFVEYSTVREAQSA 775 Query: 178 ITEMTGKWLGSRQIRCNWATKTNAEEKQ 261 + + L R + W+ ++ ++Q Sbjct: 776 MEALKHTHLLGRHLVLQWSHLASSTQQQ 803 Score = 33.5 bits (75), Expect = 0.40 Identities = 23/110 (20%), Positives = 42/110 (38%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+F+ +L + + A F ++ + + D +T S+G FVSF + A A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQD 336 G R + + N + ET + L + +A +D Sbjct: 375 KDGSTFQGRLL--HLLPAVNKDALAETGSKKTATLKQARAEQKKQDATKD 422
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 48.1 bits (113), Expect = 2e-05 Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E + +L + + +D VM D + RSRG+GFV+F + E + A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-- 67 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 A + ++ + + + AV G A + + Sbjct: 68 ---------------AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK----------- 101 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRVQQ---EKGFGFIRYSTH 519 ++VG + + L +F G + IE + +Q ++GFGF+ + H Sbjct: 102 -----LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDH 151 Score = 36.6 bits (83), Expect = 0.047 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG + + + L F Y ++ D ++G+ RG+GFV+F + + + + Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/60 (38%), Positives = 38/60 (63%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RIFVG + + N++ L FS Y S + +++ D + G S+GYGFV+F Q++A+ + E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQE 92 Score = 35.0 bits (79), Expect = 0.14 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 10/74 (13%) Frame = +1 Query: 352 NPENNPDFTTV-----YVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGF 501 NP + P + TV +VG + + N +L + F G +++EV++ + KG+GF Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYG--SVKEVKIVNDRAGVSKGYGF 77 Query: 502 IRYSTHGEAALAIQ 543 + + T +A +Q Sbjct: 78 VTFETQEDAQKILQ 91
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/60 (38%), Positives = 38/60 (63%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RIFVG + + N++ L FS Y S + +++ D + G S+GYGFV+F Q++A+ + E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQE 92 Score = 35.0 bits (79), Expect = 0.14 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 10/74 (13%) Frame = +1 Query: 352 NPENNPDFTTV-----YVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGF 501 NP + P + TV +VG + + N +L + F G +++EV++ + KG+GF Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYG--SVKEVKIVNDRAGVSKGYGF 77 Query: 502 IRYSTHGEAALAIQ 543 + + T +A +Q Sbjct: 78 VTFETQEDAQKILQ 91
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 47.8 bits (112), Expect = 2e-05 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 4/178 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L+ + +++ L F + + +D V+ + +T RSR +GFV++ N +EA+ A+ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAM-- 65 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 A +A + + AV + +D+ P + Sbjct: 66 ---------------AASPHAVDGNTVELKRAV-------------SREDSA---RPGAH 94 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE----KGFGFIRYSTHGEA 528 ++VG L +V +L HF G E+ ++ +GFGF+ + H A Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAA 152 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/57 (35%), Positives = 34/57 (59%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETA 177 ++FVG L +V + L FS + + A ++ D ++G+ RG+GFV F+N A+ A Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IF+G L E+ + + FS Y + ++ D KTG+S+G+ F+ + +Q+ A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 190 TGKWLGSRQIRCNWATKTNA-EEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENP 357 G + R IR + + A ++ +E D+ + G + + ++ E P Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKP 154
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/91 (27%), Positives = 44/91 (48%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++F+G L S V + L F+ Y ++ +M+D + +SRG+GF+SF + E Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT 154 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDN 273 E L +Q+ A + Q ++N Sbjct: 155 NERYIN-LNGKQVEIKKAEPRDGSGGQNSNN 184 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/48 (43%), Positives = 29/48 (60%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSF 150 ++FVG LS E L F + D VM +N++GRSRG+GFV+F Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTF 55
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 47.4 bits (111), Expect = 3e-05 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ D L+ FS + + V+ D +TG S Y F+ F NQ++ E A +M Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSN-----AAMEANQDTGSKEN 354 G + +I +++ + K NA + G A++E + + +N Sbjct: 310 QGVLIDDHRIHVDFSQSVS---KLSESWRNATISKRSGQRGGFGGVASLEKKRQYRASDN 366 Query: 355 P-ENNPDFTTVY 387 E D+T V+ Sbjct: 367 AREKENDYTLVF 378
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 I+VG L+ EV + L F + +D ++ D ++ R RG+ F+ + ++A AI M Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 190 TGKWLGSRQIRCNWATKTNAEE 255 L R IR N A +E Sbjct: 68 NDSELCGRTIRVNLAKPVRVKE 89
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 47.0 bits (110), Expect = 4e-05 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + L + F + +++ D TG+S GYGFV++ + ++AE AI Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 99 TLNGLRLQTKTIKVSYARP---------------------SSASIRDAN----------- 126 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L + + EL + F G + V Q +G GFIR+ EA Sbjct: 127 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Query: 532 LAIQ 543 AI+ Sbjct: 181 EAIK 184 Score = 46.6 bits (109), Expect = 5e-05 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 31/208 (14%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + L FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 190 TG-KWLGSRQ-----IRCNWATKTN-------------------AEEKQETDNHNAVVLT 294 G K G+ + N + KTN A++ Q N + + Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMA 246 Query: 295 NGGS--SNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VG 456 G S ++ P + ++V NL + + L + F G V Sbjct: 247 YGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 306 Query: 457 AIEEVRVQQEKGFGFIRYSTHGEAALAI 540 I + + KGFGF+ + + EAA+AI Sbjct: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 47.0 bits (110), Expect = 4e-05 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + L + F + +++ D TG+S GYGFV++ + ++AE AI Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 99 TLNGLRLQTKTIKVSYARP---------------------SSASIRDAN----------- 126 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L + + EL + F G + V Q +G GFIR+ EA Sbjct: 127 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Query: 532 LAIQ 543 AI+ Sbjct: 181 EAIK 184 Score = 46.6 bits (109), Expect = 5e-05 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 31/208 (14%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + L FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 190 TG-KWLGSRQ-----IRCNWATKTN-------------------AEEKQETDNHNAVVLT 294 G K G+ + N + KTN A++ Q N + + Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMA 246 Query: 295 NGGS--SNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VG 456 G S ++ P + ++V NL + + L + F G V Sbjct: 247 YGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 306 Query: 457 AIEEVRVQQEKGFGFIRYSTHGEAALAI 540 I + + KGFGF+ + + EAA+AI Sbjct: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/82 (32%), Positives = 41/82 (50%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V LS + L FS Y S V++D +TGRSRG+ FV F +++ A+ Sbjct: 117 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 176 Query: 184 EMTGKWLGSRQIRCNWATKTNA 249 G L R+IR +++ A Sbjct: 177 RANGMELDGRRIRVDYSITKRA 198
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 47.0 bits (110), Expect = 4e-05 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L F + +D VM D +T RSRG+GFV++ +E + +++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K G E K+ ++ P + Sbjct: 88 RPHKVDG-----------RVVEPKRAVSREDSA----------------------RPGAH 114 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTH 519 ++VG G + + +E H Y G G IE + V ++ +GF F+ + H Sbjct: 115 LTVKKIFVG--GIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDH 169 Score = 32.3 bits (72), Expect = 0.89 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Frame = +1 Query: 355 PENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYS 513 P+ +++G L E D L HF G + + + ++ +GFGF+ YS Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYS 76
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 47.0 bits (110), Expect = 4e-05 Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 32/209 (15%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + L FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 190 TG-KWLGSRQ-----IRCNWATKTN-------------------AEEKQETDNHNAVVLT 294 G K G+ + N + KTN A++ Q N + + Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMA 246 Query: 295 NGGSSN---AAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----V 453 G S ++ P + ++V NL + + L + F G V Sbjct: 247 YGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNV 306 Query: 454 GAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 I + + KGFGF+ + + EAA+AI Sbjct: 307 KVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335 Score = 47.0 bits (110), Expect = 4e-05 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + L + F + +++ D TG+S GYGFV++ + ++AE AI Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 99 TLNGLRLQTKTIKVSYARP---------------------SSASIRDAN----------- 126 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L + + EL + F G + V Q +G GFIR+ EA Sbjct: 127 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Query: 532 LAIQ 543 AI+ Sbjct: 181 EAIK 184
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/82 (32%), Positives = 41/82 (50%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V LS + L FS Y S V++D +TGRSRG+ FV F +++ A+ Sbjct: 119 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 178 Query: 184 EMTGKWLGSRQIRCNWATKTNA 249 G L R+IR +++ A Sbjct: 179 RANGMELDGRRIRVDYSITKRA 200
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 47.0 bits (110), Expect = 4e-05 Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 16/197 (8%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGR-----SRGYGFVSFRNQQE 165 G+ +F+ L+ L S P S ARV R S GYGFV F+ ++ Sbjct: 534 GSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEA 593 Query: 166 AETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGS 345 A A+ + G + + + +A + AE+ +ET GG + + Sbjct: 594 ATKALKALEGFEIDGKSLEVKFAQR-GAEDDRET--------KKGGDAEGGKTKS----- 639 Query: 346 KENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRV-----------QQEKG 492 T V V NL E + ++ F G ++ +R+ Q +G Sbjct: 640 ----------TKVLVKNLPFEATKKDVRELF--SAYGQLKSLRLPRKAVPTSTGAQSTRG 687 Query: 493 FGFIRYSTHGEAALAIQ 543 F F+ ++TH EAA A++ Sbjct: 688 FAFLEFTTHTEAARAME 704 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETA 177 +R+FV +L+ +L + FSTY + + TG G F+ F N ++A A Sbjct: 221 SRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAA 278
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 46.6 bits (109), Expect = 5e-05 Identities = 22/60 (36%), Positives = 37/60 (61%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RIFVG + + N+ L FS Y S + +++ D + G S+GYGF++F Q++A+ + E Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFITFETQEDAQKILQE 92 Score = 36.6 bits (83), Expect = 0.047 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 10/74 (13%) Frame = +1 Query: 352 NPENNPDFTTV-----YVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGF 501 NP + P + TV +VG + + N ++L + F G +++EV++ + KG+GF Sbjct: 20 NPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYG--SVKEVKIVNDRAGVSKGYGF 77 Query: 502 IRYSTHGEAALAIQ 543 I + T +A +Q Sbjct: 78 ITFETQEDAQKILQ 91
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 46.6 bits (109), Expect = 5e-05 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L + F + + +D VM D T RSRG+GFV++ ++ + A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K + R + A + E+ Q H V Sbjct: 74 RPHK-VDGRVVEPKRA--VSREDSQRPGAHLTV--------------------------- 103 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ----QEKGFGFIRYSTH 519 ++VG + + L +F G + E+ +++GF F+ + H Sbjct: 104 ---KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 155 Score = 33.5 bits (75), Expect = 0.40 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Frame = +1 Query: 349 ENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYST 516 E+P+ +++G L E + L HF G + + ++ +GFGF+ Y+T Sbjct: 4 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 63
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 46.6 bits (109), Expect = 5e-05 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 31/208 (14%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + L FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 190 TG-KWLGSRQ-----IRCNWATKTN-------------------AEEKQETDNHNAVVLT 294 G K G+ + N + KTN A++ Q N + + Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMA 246 Query: 295 NGGS--SNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VG 456 G S ++ P + ++V NL + + L + F G V Sbjct: 247 YGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVK 306 Query: 457 AIEEVRVQQEKGFGFIRYSTHGEAALAI 540 I + + KGFGF+ + + EAA+AI Sbjct: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAI 334 Score = 44.3 bits (103), Expect = 2e-04 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + L + L + F + +++ D TG+S GYGFV++ + ++AE AI Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 99 TLNGLRLQTKTIKVSYARP---------------------SSASIRDAN----------- 126 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L + + EL + F G + V Q +G GFIR+ EA Sbjct: 127 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180 Query: 532 LAIQ 543 AI+ Sbjct: 181 EAIK 184
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/57 (33%), Positives = 36/57 (63%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + + +++ + +CF Y S + +++ N+TG S+GYGFVSF N + + + Sbjct: 372 VFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQKIV 427 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/57 (33%), Positives = 36/57 (63%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + + +++ + +CF Y S + +++ N+TG S+GYGFVSF N + + + Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQKIV 262 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/57 (33%), Positives = 36/57 (63%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + + +++ + +CF Y S + +++ N+TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQKIV 97
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/57 (33%), Positives = 36/57 (63%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + + +++ + +CF Y S + +++ N+TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQKIV 97
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 46.2 bits (108), Expect = 6e-05 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 6/177 (3%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L F + +D VM D +T RSRG+GFV++ +E + +++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K G E K+ ++ P + Sbjct: 88 RPHKVDG-----------RVVEPKRAVSREDSA----------------------RPGAH 114 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTH 519 ++VG G + + +E H Y+ G IE + V ++ +GF F+ + H Sbjct: 115 LTVKKIFVG--GIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDH 169 Score = 32.7 bits (73), Expect = 0.68 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +1 Query: 352 NPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYS 513 +P+ +++G L E D L HF G + + + ++ +GFGF+ YS Sbjct: 19 DPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYS 76
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 46.2 bits (108), Expect = 6e-05 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 4/174 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L+ + + L F Y + +D ++M D TGRSRG+GF+SF + + Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV-- 217 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 T L + I A + ++K TG Sbjct: 218 KTQHILDGKVIDPKRAIPRDEQDK--------------------------TGK------- 244 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQ----QEKGFGFIRYST 516 ++VG +G +V E F G ++ + Q +GFGF+ Y + Sbjct: 245 -----IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 293 Score = 45.4 bits (106), Expect = 1e-04 Identities = 34/127 (26%), Positives = 54/127 (42%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG + +V FS + + DA++M D TG+SRG+GFV++ A+ Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY---DSADAVDRV 300 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K++ + E K+ H +N G +N N+ G N N Sbjct: 301 CQNKFIDFKD--------RKIEIKRAEPRHMQQKSSNNGGNNGGNNMNRRGG---NFGNQ 349 Query: 367 PDFTTVY 387 DF +Y Sbjct: 350 GDFNQMY 356
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/57 (33%), Positives = 36/57 (63%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + + +++ + +CF Y S + +++ N+TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQKIV 97
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/57 (33%), Positives = 36/57 (63%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + + +++ + +CF Y S + +++ N+TG S+GYGFVSF N + + + Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQKIV 262 Score = 46.2 bits (108), Expect = 6e-05 Identities = 19/57 (33%), Positives = 36/57 (63%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + + +++ + +CF Y S + +++ N+TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQKIV 97
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 45.8 bits (107), Expect = 8e-05 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 49/227 (21%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 IFVG ++ ++ L FS Y ++++D G GYGF+S+ +A I E+ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 G+ + + N+ + E+ D+ KEN N+ Sbjct: 257 NGRTVNGSTLFINYHVERKERERIHWDH-----------------------VKEN-NNDD 292 Query: 370 DFTTVYVGNLGH----------------EVNRDELHRHFYNLGV---------------- 453 +F +++GNL + EV + EL + F + + Sbjct: 293 NFRCLFIGNLPYHNPEKVETLITPKEVIEVIKKELSKKFPDFDIISYYFPKRSNTRSSSS 352 Query: 454 ------GAIEEVR--------VQQE---KGFGFIRYSTHGEAALAIQ 543 G++E + Q E KG+GFI+ H +A AI+ Sbjct: 353 VSFNEEGSVESNKSSNNTNGNAQDEDMLKGYGFIKLINHEQALAAIE 399 Score = 33.1 bits (74), Expect = 0.52 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%) Frame = +1 Query: 106 DNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQI-RCNWATK------TNAEEKQE 264 D G SRGYGFVSF + +A AI G + Q+ ++A K ++ +++ + Sbjct: 593 DLPVGSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRGNLSSSDDDDQSQ 652 Query: 265 TDN 273 TDN Sbjct: 653 TDN 655 Score = 30.0 bits (66), Expect = 4.4 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +1 Query: 127 RGYGFVSFRNQQEAETAITEMTG-KWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGG 303 +GYGF+ N ++A AI G W G+R + A + + +NHN+ Sbjct: 381 KGYGFIKLINHEQALAAIETFNGFMWHGNRLV------VNKAVQHKVYNNHNSHDRHPSI 434 Query: 304 SSNAAMEANQDTGSKENPENNPDFTTVYVGN 396 S++ ME + + NN + Y N Sbjct: 435 SNHNDMEVLEFANNPMYDYNNYTYDRYYFNN 465
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 45.8 bits (107), Expect = 8e-05 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 1/182 (0%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G+R++VG L V + L F Y D + GYGFV F + ++A+ A+ Sbjct: 2 GSRVYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAV 53 Query: 181 TEMTGKWLGSRQIRCNWATKT-NAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENP 357 E+ GK L ++ A T + D+ GG N + S+ P Sbjct: 54 YELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGP 113 Query: 358 ENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 ++ + V NL V+ +L + G + +Q + G + +++ + A Sbjct: 114 PLRTEYRLI-VENLSSRVSWQDLKDYMRQAGEVTYADAH-KQRRNEGVVEFASLSDMKTA 171 Query: 538 IQ 543 I+ Sbjct: 172 IE 173
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 45.8 bits (107), Expect = 8e-05 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L F + + +D VM D +T RSRG+GFV++ +E + A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K G E K+ ++V P + Sbjct: 96 RPHKVDG-----------RVVEPKRAVSREDSV----------------------KPGAH 122 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTH 519 ++VG + + L +F G + +E+ + +++GF F+ + H Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDH 177 Score = 33.5 bits (75), Expect = 0.40 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +1 Query: 352 NPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYSTH 519 +P+ +++G L E D L HF G + + + ++ +GFGF+ YS Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 520 GEAALAI 540 E A+ Sbjct: 87 EEVDAAM 93
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 45.8 bits (107), Expect = 8e-05 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L F + + +D VM D +T RSRG+GFV++ +E + A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K G E K+ ++V P + Sbjct: 96 RPHKVDG-----------RVVEPKRAVSREDSV----------------------KPGAH 122 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTH 519 ++VG + + L +F G + +E+ + +++GF F+ + H Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDH 177 Score = 33.5 bits (75), Expect = 0.40 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +1 Query: 352 NPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYSTH 519 +P+ +++G L E D L HF G + + + ++ +GFGF+ YS Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 520 GEAALAI 540 E A+ Sbjct: 87 EEVDAAM 93
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 45.8 bits (107), Expect = 8e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +F+G+L S V + L F Y S A+V D T +S GYG+++F+++ +AE+A E Sbjct: 113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKE 171
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 45.8 bits (107), Expect = 8e-05 Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E D +L F + + +D VM D +T RSRG+GFV++ +E + A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K G E K+ ++V P + Sbjct: 96 RPHKVDG-----------RVVEPKRAVSREDSV----------------------KPGAH 122 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTH 519 ++VG + + L +F G + +E+ + +++GF F+ + H Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDH 177 Score = 33.5 bits (75), Expect = 0.40 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = +1 Query: 352 NPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGV----GAIEEVRVQQEKGFGFIRYSTH 519 +P+ +++G L E D L HF G + + + ++ +GFGF+ YS Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 520 GEAALAI 540 E A+ Sbjct: 87 EEVDAAM 93
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 45.4 bits (106), Expect = 1e-04 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + + F + +++ D TG+S GYGFV++ + ++AE AI Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 106 TLNGLRLQTKTIKVSYARP---------------------SSASIRDAN----------- 133 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L + + EL + F G + V Q +G GFIR+ EA Sbjct: 134 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 187 Query: 532 LAIQ 543 AI+ Sbjct: 188 EAIK 191 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + L FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193 Query: 190 TGK 198 G+ Sbjct: 194 NGQ 196
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 45.4 bits (106), Expect = 1e-04 Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E + +L + + + +D VM D + RSRG+GFV+F E + A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM-- 67 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 AT+ + + + + AV A + + Sbjct: 68 ---------------ATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKK----------- 101 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRVQQ---EKGFGFIRYSTH 519 ++VG + + L +F G + +IE + +Q ++GF F+ + H Sbjct: 102 -----LFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDH 151 Score = 35.0 bits (79), Expect = 0.14 Identities = 13/60 (21%), Positives = 29/60 (48%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG + + + L F Y ++ D ++G+ RG+ FV+F + + + + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 45.4 bits (106), Expect = 1e-04 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + + F + +++ D TG+S GYGFV++ + ++AE AI Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 99 TLNGLRLQTKTIKVSYARP---------------------SSASIRDAN----------- 126 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L + + EL + F G + V Q +G GFIR+ EA Sbjct: 127 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180 Query: 532 LAIQ 543 AI+ Sbjct: 181 EAIK 184 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + L FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 190 TGK 198 G+ Sbjct: 187 NGQ 189
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 45.4 bits (106), Expect = 1e-04 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + + F + +++ D TG+S GYGFV++ + ++AE AI Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 111 TLNGLRLQTKTIKVSYARP---------------------SSASIRDAN----------- 138 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L + + EL + F G + V Q +G GFIR+ EA Sbjct: 139 ------LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 192 Query: 532 LAIQ 543 AI+ Sbjct: 193 EAIK 196 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + L FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198 Query: 190 TGK 198 G+ Sbjct: 199 NGQ 201
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F AR++ D +TG S+G+GFV F ++++A+ A M Sbjct: 574 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Query: 190 TGKWLGSRQIRCNWA 234 + ++ +WA Sbjct: 631 EDGEIDGNKVTLDWA 645 Score = 32.7 bits (73), Expect = 0.68 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 1/144 (0%) Frame = +1 Query: 109 NKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVV 288 N+ G+S+GY F+ F + ++A+ A+ + + R IR Sbjct: 517 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR---------------------- 554 Query: 289 LTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHF-YNLGVGAIE 465 +E GS N + P T++V L + + L F ++ + Sbjct: 555 ----------LELQGPRGS-PNARSQPS-KTLFVKGLSEDTTEETLKESFDGSVRARIVT 602 Query: 466 EVRVQQEKGFGFIRYSTHGEAALA 537 + KGFGF+ +++ +A A Sbjct: 603 DRETGSSKGFGFVDFNSEEDAKAA 626
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F AR++ D +TG S+G+GFV F ++++A+ A M Sbjct: 576 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 190 TGKWLGSRQIRCNWA 234 + ++ +WA Sbjct: 633 EDGEIDGNKVTLDWA 647 Score = 33.1 bits (74), Expect = 0.52 Identities = 20/71 (28%), Positives = 40/71 (56%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+G+L+ + A L S + +D + D +TG +R +G+V F + ++ E A+ E+ Sbjct: 312 LFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGTNRKFGYVDFESAEDLEKAL-EL 369 Query: 190 TGKWLGSRQIR 222 TG + +I+ Sbjct: 370 TGLKVFGNEIK 380
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F AR++ D +TG S+G+GFV F ++++A+ A M Sbjct: 573 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 190 TGKWLGSRQIRCNWA 234 + ++ +WA Sbjct: 630 EDGEIDGNKVTLDWA 644 Score = 32.7 bits (73), Expect = 0.68 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 1/144 (0%) Frame = +1 Query: 109 NKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVV 288 N+ G+S+GY F+ F + ++A+ A+ + + R IR Sbjct: 516 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR---------------------- 553 Query: 289 LTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHF-YNLGVGAIE 465 +E GS N + P T++V L + + L F ++ + Sbjct: 554 ----------LELQGPRGS-PNARSQPS-KTLFVKGLSEDTTEETLKESFDGSVRARIVT 601 Query: 466 EVRVQQEKGFGFIRYSTHGEAALA 537 + KGFGF+ +++ +A A Sbjct: 602 DRETGSSKGFGFVDFNSEEDAKAA 625
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 39/76 (51%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG LS+ + F + DA +M+D T R RG+GFV+F N+ E + E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE-KVCE 169 Query: 187 MTGKWLGSRQIRCNWA 234 + + ++ + C A Sbjct: 170 IHFHEINNKMVECKKA 185 Score = 41.2 bits (95), Expect = 0.002 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + + +L FS + + VM D T RSRG+GFV+F + + + + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAME 324 + L S+ I A A+ K T + G S+N +E Sbjct: 82 PHHE-LDSKTIDPKVAFPRRAQPKMVT--RTKKIFVGGLSANTVVE 124
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 39/76 (51%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG LS+ + F + DA +M+D T R RG+GFV+F N+ E + E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE-KVCE 169 Query: 187 MTGKWLGSRQIRCNWA 234 + + ++ + C A Sbjct: 170 IHFHEINNKMVECKKA 185 Score = 41.2 bits (95), Expect = 0.002 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + + +L FS + + VM D T RSRG+GFV+F + + + + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAME 324 + L S+ I A A+ K T + G S+N +E Sbjct: 82 PHHE-LDSKTIDPKVAFPRRAQPKMVT--RTKKIFVGGLSANTVVE 124
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F AR++ D +TG S+G+GFV F ++++A+ A M Sbjct: 575 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Query: 190 TGKWLGSRQIRCNWA 234 + ++ +WA Sbjct: 632 EDGEIDGNKVTLDWA 646 Score = 32.7 bits (73), Expect = 0.68 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 1/144 (0%) Frame = +1 Query: 109 NKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVV 288 N+ G+S+GY F+ F + ++A+ A+ + + R IR Sbjct: 518 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR---------------------- 555 Query: 289 LTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHF-YNLGVGAIE 465 +E GS N + P T++V L + + L F ++ + Sbjct: 556 ----------LELQGPRGS-PNARSQPS-KTLFVKGLSEDTTEETLKESFDGSVRARIVT 603 Query: 466 EVRVQQEKGFGFIRYSTHGEAALA 537 + KGFGF+ +++ +A A Sbjct: 604 DRETGSSKGFGFVDFNSEEDAKAA 627
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/77 (31%), Positives = 38/77 (49%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV +++ + L F Y D V D T R RG+ +V F + ++AE A+ Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69 Query: 184 EMTGKWLGSRQIRCNWA 234 + KW+ RQI +A Sbjct: 70 NLDRKWICGRQIEIQFA 86
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/77 (31%), Positives = 38/77 (49%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +FV +++ + L F Y D V D T R RG+ +V F + ++AE A+ Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69 Query: 184 EMTGKWLGSRQIRCNWA 234 + KW+ RQI +A Sbjct: 70 NLDRKWICGRQIEIQFA 86
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F AR++ D +TG S+G+GFV F ++++A+ A M Sbjct: 570 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626 Query: 190 TGKWLGSRQIRCNWA 234 + ++ +WA Sbjct: 627 EDGEIDGNKVTLDWA 641 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/71 (28%), Positives = 40/71 (56%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+G+L+ + L S + +D V+ D +TG +R +G+V F + ++ E A+ E+ Sbjct: 310 LFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKAL-EL 367 Query: 190 TGKWLGSRQIR 222 TG + +I+ Sbjct: 368 TGLKVFGNEIK 378
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F AR++ D +TG S+G+GFV F ++++A+ A M Sbjct: 573 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 190 TGKWLGSRQIRCNWA 234 + ++ +WA Sbjct: 630 EDGEIDGNKVTLDWA 644 Score = 33.9 bits (76), Expect = 0.31 Identities = 21/71 (29%), Positives = 41/71 (57%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +F+G+L+ + A L S + +D V+ D +TG +R +G+V F + ++ E A+ E+ Sbjct: 309 LFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKAL-EL 366 Query: 190 TGKWLGSRQIR 222 TG + +I+ Sbjct: 367 TGLKVFGNEIK 377 Score = 32.0 bits (71), Expect = 1.2 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 3/146 (2%) Frame = +1 Query: 109 NKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVV 288 N+ G+S+GY F+ F + ++A+ A+ CN K E + + Sbjct: 516 NQQGKSKGYAFIEFASFEDAKEALNS------------CN---------KMEIEGRTIRL 554 Query: 289 LTNG--GSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFY-NLGVGA 459 G GS NA + ++ T++V L + + L F ++ Sbjct: 555 ELQGPRGSPNARSQPSK---------------TLFVKGLSEDTTEETLKESFEGSVRARI 599 Query: 460 IEEVRVQQEKGFGFIRYSTHGEAALA 537 + + KGFGF+ +++ +A A Sbjct: 600 VTDRETGSSKGFGFVDFNSEEDAKAA 625
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/124 (24%), Positives = 57/124 (45%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FV ++S + + L FS + + + R+M + T SRG+GF+SF +EA +AI Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 + + R + N ++ + + H+ + M ++ S++ P Sbjct: 160 DNLNSQEFYGRVL--------NVQKAKRSRPHSP-------TPGKYMGYDRRRNSRDFPS 204 Query: 361 NNPD 372 NN D Sbjct: 205 NNKD 208 Score = 34.7 bits (78), Expect = 0.18 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%) Frame = +1 Query: 304 SSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ 483 + + A++ + + E EN + ++V + + DEL + F G + VR+ + Sbjct: 79 NESTALDKKEPQSAPEGSENLGN--DLFVSGIASRMQEDELQQIFSKFGT--VTHVRIMR 134 Query: 484 E------KGFGFIRYSTHGEAALAI 540 E +GFGF+ +ST EA AI Sbjct: 135 EPVTKASRGFGFLSFSTVEEATSAI 159
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 43.9 bits (102), Expect = 3e-04 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + + F + +++ D TG+S GYGFV++ + +A+ AI Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 99 TLNGLKLQTKTIKVSYARP---------------------SSASIRDAN----------- 126 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L +++ E+ + F G + V Q +G GFIR+ EA Sbjct: 127 ------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180 Query: 532 LAIQ 543 AI+ Sbjct: 181 EAIK 184 Score = 42.7 bits (99), Expect = 7e-04 Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 39/216 (18%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L ++ + FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 190 TG-KWLGSRQ-IRCNWATKTNAEEKQETDNH-----------------------NAVVLT 294 G K LG+ + I +A + + Q H N + + Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMA 246 Query: 295 NGGSSNAAMEANQDTGSKENPENNPDF----------TTVYVGNLGHEVNRDELHRHFYN 444 G S ++ A + + ++V NL E + L + F Sbjct: 247 YGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGP 306 Query: 445 LG----VGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 G V I + + KGFGF+ + + EAA+AI Sbjct: 307 FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = +1 Query: 25 LSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWL 204 LS + L FS Y +D +++D ++ RSRG+ FV F N +A+ A G L Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184 Query: 205 GSRQIRCNWA 234 R+IR +++ Sbjct: 185 DGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = +1 Query: 25 LSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWL 204 LS + L FS Y +D +++D ++ RSRG+ FV F N +A+ A G L Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184 Query: 205 GSRQIRCNWA 234 R+IR +++ Sbjct: 185 DGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = +1 Query: 25 LSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWL 204 LS + L FS Y +D +++D ++ RSRG+ FV F N +A+ A G L Sbjct: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184 Query: 205 GSRQIRCNWA 234 R+IR +++ Sbjct: 185 DGRRIRVDFS 194
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 43.5 bits (101), Expect = 4e-04 Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 39/216 (18%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L ++ + FS Y +R++ D TG SRG GF+ F + EAE AI + Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 190 TG-KWLGSRQ-IRCNWATKTNAEEKQETDNH-----------------------NAVVLT 294 G K LG+ + I +A + + Q H N + + Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMA 246 Query: 295 NGGSSNAAMEANQDTGSKENPENNPDF----------TTVYVGNLGHEVNRDELHRHFYN 444 G S ++ A + + ++V NL E + L + F Sbjct: 247 YGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGP 306 Query: 445 LG----VGAIEEVRVQQEKGFGFIRYSTHGEAALAI 540 G V I + + KGFGF+ + + EAA+AI Sbjct: 307 FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342 Score = 42.7 bits (99), Expect = 7e-04 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + V L + + F + +++ D TG+S GYGFV++ + +A+ AI Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 + G L ++ I+ ++A SS + +AN Sbjct: 99 TLNGLKLQTKTIKVSYARP---------------------SSASIRDAN----------- 126 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQ----EKGFGFIRYSTHGEAA 531 +YV L +++ E+ + F G + + Q +G GFIR+ EA Sbjct: 127 ------LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAE 180 Query: 532 LAIQ 543 AI+ Sbjct: 181 EAIK 184
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 43.5 bits (101), Expect = 4e-04 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+ + +LS + ++ L F+ + + + + G+ RG+GFV F+N EA A+ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIP-RKPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 187 MTGKWLGSRQIRCNWATKTN-----------AEEKQETDNHNAVVLTNGGSSNAAMEANQ 333 M K + R + +WA + EEK H V G E Sbjct: 173 MNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEEN 232 Query: 334 DTGSKENPENNPDF 375 D ++ E + F Sbjct: 233 DDDDDDDDEEDGVF 246 Score = 39.7 bits (91), Expect = 0.006 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FVG L L FS V+ + + RG+G+V+F ++ + A+ Sbjct: 2 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 E+T + G + K + K++ N N+ + A A++ Sbjct: 62 KEIT-TFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKK-------- 112 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGE 525 + + NL + + D+L F GA+ EV + ++ +GFGF+++ E Sbjct: 113 -----ARLIIRNLSFKCSEDDLKTVFAQF--GAVLEVNIPRKPDGKMRGFGFVQFKNLLE 165 Query: 526 AALAIQ 543 A A++ Sbjct: 166 AGKALK 171 Score = 30.4 bits (67), Expect = 3.4 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 6/95 (6%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +F+ +LS + + L + R++ T S+G F F Q+ A+ + Sbjct: 333 GKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 392 Query: 181 ------TEMTGKWLGSRQIRCNWATKTNAEEKQET 267 E G L RQ++ + A + K +T Sbjct: 393 LAASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQT 427
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 43.5 bits (101), Expect = 4e-04 Identities = 25/83 (30%), Positives = 37/83 (44%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++VG L + + L + F + RV KTG S+GYGFV F + A+ M Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 190 TGKWLGSRQIRCNWATKTNAEEK 258 +G R I+C+ EK Sbjct: 107 NNYLMGERIIKCHVIPPEKVHEK 129
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 2/131 (1%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ D L FS + V+ D +TG S Y F+ F +Q++ E A +M Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309 Query: 190 TGKWLGSRQIRCNWATKTN--AEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPEN 363 G + +I +++ + +E ++ G A +E + + EN Sbjct: 310 QGVLIDDHRIHVDFSQSVSKLSESWRDATVKKRSAQRGGFGGVAGLEKKRQYRASENARE 369 Query: 364 NPDFTTVYVGN 396 ++ V+ N Sbjct: 370 RANYNMVFDKN 380
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/74 (27%), Positives = 39/74 (52%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FVG++ +V++ + F+ +++ D +TG +GYGF F + + A+ Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65 Query: 181 TEMTGKWLGSRQIR 222 ++ LG R+IR Sbjct: 66 RKLNNSELGPRKIR 79
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 43.1 bits (100), Expect = 5e-04 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 4/172 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG LS + + L F+ + D + D TGRSRG+GF+ F++ E + + Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + L R I AM +D K Sbjct: 136 KEHR-LDGRVI----------------------------DPKKAMAMKKDPVKK------ 160 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIE---EVRVQQEKGFGFIRY 510 ++VG L E +++ +F G + AIE + ++ + +GF FI + Sbjct: 161 -----IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/69 (21%), Positives = 31/69 (44%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG L+ E + + F + + D K + RG+ F++F+ + + + + Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 187 MTGKWLGSR 213 GS+ Sbjct: 220 KFHTVSGSK 228
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/77 (28%), Positives = 37/77 (48%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T +F+ +++ L F Y D + D T R RG+ +V F + ++AE A+ Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69 Query: 184 EMTGKWLGSRQIRCNWA 234 + KW+ RQI +A Sbjct: 70 NLNRKWVCGRQIEIQFA 86
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/60 (36%), Positives = 33/60 (55%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT IFVG + ++ + L F D R+M D TG +RGY FV+F ++ A+ A+ Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/60 (36%), Positives = 33/60 (55%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT IFVG + ++ + L F D R+M D TG +RGY FV+F ++ A+ A+ Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/77 (28%), Positives = 38/77 (49%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 T + + +LS + L F Y D + D + +S+G+GFV F +++AE A+ Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78 Query: 184 EMTGKWLGSRQIRCNWA 234 GK + R++R A Sbjct: 79 RTDGKLVDGRELRVTLA 95 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Frame = +1 Query: 376 TTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVR---VQQEKGFGFIRYSTHGEAALAI 540 T++ + NL ++ ++L R F G +G + R +Q KGFGF+R+ +A A+ Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHAL 77
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 42.7 bits (99), Expect = 7e-04 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS E + +L + + +D VM D + RSRG+GFV+F E + A+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM-- 67 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + + + + + + AV A + + Sbjct: 68 ---------------SARPHTIDGRVVEPKRAVAREESAKPGAHVTVKK----------- 101 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTH 519 ++VG + + L +F G I + + +++GFGF+ ++ H Sbjct: 102 -----LFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDH 151 Score = 38.5 bits (88), Expect = 0.012 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG + + + L F Y ++ D ++G+ RG+GFV+F + + + + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 42.7 bits (99), Expect = 7e-04 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 7/185 (3%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L++ + LY F DA+++ D +GRS+G +V F ++ + AI Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQ--DTGSKENPEN 363 + LG I V LT + A EA + S E P Sbjct: 302 GKRLLGLPVI---------------------VQLTEAEKNRKAREAAELARAASAEIP-- 338 Query: 364 NPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGEA 528 F + V N+ + +++ F G IE V +Q++ KGFG+I+Y A Sbjct: 339 ---FHRLCVSNIHFNLTDEDVKAIFEPF--GDIEFVHLQRDDQNRSKGFGYIQYRNPISA 393 Query: 529 ALAIQ 543 A++ Sbjct: 394 RNALE 398 Score = 36.6 bits (83), Expect = 0.047 Identities = 19/72 (26%), Positives = 36/72 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+ V ++ + D + A F + + D++ RS+G+G++ +RN A A+ + Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEK 399 Query: 187 MTGKWLGSRQIR 222 M G L R +R Sbjct: 400 MNGFDLAGRNMR 411 Score = 30.8 bits (68), Expect = 2.6 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 130 GYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTN 246 G FV F N AE AIT + +W G R I+ + +T+ Sbjct: 555 GQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPETD 593
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG LS + F + DA +M+D T R RG+GFV+F ++ E + E Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE-KVCE 168 Query: 187 MTGKWLGSRQIRCNWA 234 + + ++ + C A Sbjct: 169 IHFHEINNKMVECKKA 184 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/106 (28%), Positives = 47/106 (44%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + L F + + VM D T RSRG+GFV+F +Q + + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAME 324 + L S+ I A A+ K T + G S N +E Sbjct: 81 SRHE-LDSKTIDPKVAFPRRAQPKMVT--RTKKIFVGGLSVNTTVE 123
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/60 (36%), Positives = 33/60 (55%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT IFVG + ++ + L F D R+M D TG +RGY FV+F ++ A+ A+ Sbjct: 71 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.4 bits (98), Expect = 9e-04 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG LS + F + DA +M+D T R RG+GFV+F ++ E + E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE-KVCE 168 Query: 187 MTGKWLGSRQIRCNWA 234 + + ++ + C A Sbjct: 169 IHFHEINNKMVECKKA 184 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/106 (28%), Positives = 47/106 (44%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + L F + + VM D T RSRG+GFV+F +Q + + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAME 324 + L S+ I A A+ K T + G S N +E Sbjct: 81 SRHE-LDSKTIDPKVAFPRRAQPKMVT--RTKKIFVGGLSVNTTVE 123
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.4 bits (98), Expect = 9e-04 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IFVG LS + F + DA +M+D T R RG+GFV+F ++ E + E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE-KVCE 168 Query: 187 MTGKWLGSRQIRCNWA 234 + + ++ + C A Sbjct: 169 IHFHEINNKMVECKKA 184 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/106 (28%), Positives = 47/106 (44%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + L F + + VM D T RSRG+GFV+F +Q + + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAME 324 + L S+ I A A+ K T + G S N +E Sbjct: 81 SRHE-LDSKTIDPKVAFPRRAQPKMVT--RTKKIFVGGLSVNTTVE 123
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 42.4 bits (98), Expect = 9e-04 Identities = 23/77 (29%), Positives = 39/77 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+ V ++ D L F + SD ++++ + S+G+GFV+ Q+AE A E Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 187 MTGKWLGSRQIRCNWAT 237 + G + R+I N AT Sbjct: 212 LHGSMIEGRKIEVNCAT 228
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 42.4 bits (98), Expect = 9e-04 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L D L A F + + D VM D KT RSRG+GF+++ + A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K + R + A +QE D+ NA Sbjct: 85 RPHK-IDGRTVE-----PKRAVPRQEIDSPNA---------------------------G 111 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTH 519 ++VG L + + + L +F + G V + + +++GF FI + + Sbjct: 112 ATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDY 166 Score = 34.7 bits (78), Expect = 0.18 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L + ++ L F + ++ D TG+ RG+ F+ F + + I + Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 187 MT 192 T Sbjct: 176 KT 177 Score = 32.7 bits (73), Expect = 0.68 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Frame = +1 Query: 322 EANQDTGSKENPENNPD---FTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQ 480 E N G+ ++ E + +++G L + D L HF G V +++ + + Sbjct: 3 EQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTK 62 Query: 481 QEKGFGFIRYS 513 + +GFGFI YS Sbjct: 63 RSRGFGFITYS 73
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/60 (31%), Positives = 34/60 (56%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 GT +FVG + ++ + L F D R+M D +G++RGY F++F ++ A+ A+ Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/74 (24%), Positives = 39/74 (52%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 ++V L + +++ +++ FS + + + R+ +TG S+GY FV F ++ A+ M Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106 Query: 190 TGKWLGSRQIRCNW 231 G R + C++ Sbjct: 107 NNYLFGERLLECHF 120
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 41.6 bits (96), Expect = 0.001 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G IF+G L ++ + L + R+M D G +RGY FV+F N+QEA+ AI Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAKNAI 113 Query: 181 TEM------TGKWLG 207 ++ TG+ LG Sbjct: 114 KQLNNYEIRTGRLLG 128
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/57 (31%), Positives = 35/57 (61%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + +++ + + F+ Y S + +++ D +TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIV 97
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG LS + + L F+ + D + D TGRSRG+GF+ F++ E + + Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 41.6 bits (96), Expect = 0.001 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 4/175 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L D +L F + D VM D KT RSRG+GF+++ + A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN- 76 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + + + + + AV T G PE Sbjct: 77 ----------------ARPHKVDGRVVEPKRAVPRTEIG----------------RPEAG 104 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRYSTH 519 ++VG + E+ ++L +F G + + ++++GF F+ + + Sbjct: 105 ATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDY 159 Score = 34.3 bits (77), Expect = 0.23 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = +1 Query: 346 KENPENNPDFTT-VYVGNLGHEVNRDELHRHFYNLG----VGAIEEVRVQQEKGFGFIRY 510 +EN P+ +++G L + + L +HF G V +++ + ++ +GFGFI Y Sbjct: 6 RENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65 Query: 511 S 513 S Sbjct: 66 S 66
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/91 (24%), Positives = 43/91 (47%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+F+ ++S E ++ + FS Y + + + D +TG+S+G+ +V F +++A A Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHN 279 + + R + A K E D N Sbjct: 371 LDKQIFQGRLLHILPADKKKDHRLDEFDLKN 401 Score = 35.8 bits (81), Expect = 0.081 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRS-RGYGFVSFRNQQEAETAI 180 ++I + +L E L F + RV K +S RG+ FV F +EAETA+ Sbjct: 717 SKIIIKNLPFEATRKDLLELFGAFGQLKSVRV--PKKFDQSARGFAFVEFNLMKEAETAM 774 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 +++ G L R++ +A + + E + V + N A G E E Sbjct: 775 SQLEGVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVATQNLAAARLAGKGKIELEE 834 Query: 361 NNPD 372 + + Sbjct: 835 KDEE 838
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/57 (31%), Positives = 35/57 (61%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + +N+A + + F Y + + +++ D +TG S+GYGFVSF + + + + Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITD-RTGVSKGYGFVSFLDNVDVQKIV 93
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ D L FS + V+ D KTG S Y F+ F +++ E A ++M Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKM 314 Query: 190 TGKWLGSRQIRCN-----------WATKTNAEEK 258 + R+I + W ++TN++ K Sbjct: 315 DSVLIDDRRIHVDFSQSVSKLSDVWRSETNSKRK 348
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/75 (29%), Positives = 36/75 (48%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ D L FS + V+ D +TG S Y F+ F NQ++ E A +M Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 190 TGKWLGSRQIRCNWA 234 G + +I +++ Sbjct: 310 QGVLIDDHRIHVDFS 324
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/74 (25%), Positives = 37/74 (50%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +++G L S ++++ +Y + + S R+ +TG S+GY FV F ++ A+ M Sbjct: 49 VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 108 Query: 190 TGKWLGSRQIRCNW 231 G R + C + Sbjct: 109 DNYLFGERLLSCKF 122
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 41.2 bits (95), Expect = 0.002 Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 1/177 (0%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 + V +LS ++ TL F S M N GR +GY FV F ++A+ A+ Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEALNSC 518 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + R IR +++ + + G+ NA NQ + Sbjct: 519 NNTEIEGRAIRLEFSSPSWQK----------------GNMNARGGFNQQS---------- 552 Query: 370 DFTTVYVGNLGHEVNRDELHRHFY-NLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 T++V L + + L F ++ + + KGFGF+ +S+ +A A Sbjct: 553 --KTLFVRGLSEDTTEETLRESFEGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F S AR++ D TG S+G+GFV F + ++A+ A M Sbjct: 555 LFVRGLSEDTTEETLRESFEGSIS---ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 190 TGKWLGSRQIRCNWA 234 + ++ ++A Sbjct: 612 EDGEIDGNKVTLDFA 626 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Frame = +1 Query: 109 NKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQE--TDNHNA 282 NK G S+G ++ F+ + EAE A+ E G + R + ++ + + +E Q+ + + Sbjct: 402 NKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESK 461 Query: 283 VVLTNGGSSNAAMEANQDTGSK----ENPENN 366 ++ N S A+ E Q+ K + P+NN Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSIKMPQNN 493 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Frame = +1 Query: 250 EEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELH 429 E+++E+++ V G + K+ E +++V NL + +EL Sbjct: 239 EDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELR 298 Query: 430 ---RHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAIQM 546 + F+ + EVR+ K FG++ + + + A+Q+ Sbjct: 299 TAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQL 340
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 I V +LS + + L F + S S + D TG+S+G+ F+SF +++A AI + Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300 Query: 190 TGKWLGSRQIRCNWA 234 +G + WA Sbjct: 301 SGFGYDHLILNVEWA 315
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 I V +LS + + L F + S S + D TG+S+G+ F+SF +++A AI + Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300 Query: 190 TGKWLGSRQIRCNWA 234 +G + WA Sbjct: 301 SGFGYDHLILNVEWA 315
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/57 (31%), Positives = 35/57 (61%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + +++ + + F+ Y S + +++ D +TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIV 97
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/57 (31%), Positives = 35/57 (61%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + +++ + + F+ Y S + +++ D +TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIV 97
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/57 (31%), Positives = 34/57 (59%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 +FVG + +++ + F+ Y S + +++ D +TG S+GYGFVSF N + + + Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIV 97
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 40.8 bits (94), Expect = 0.003 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTY------------PSCSDARVMWDNKTGRSRGYGFVSFR 153 I+V LS + + L F Y P R+ + R RG+GFVSF Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266 Query: 154 NQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQ 333 N ++ AI EM GK +G + A E+KQ +N + N +EA++ Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVKSA--VFREDKQNDENEK--------NENEPIEASE 316 Query: 334 DTGSKENPENNPDFTTV 384 + + P + V Sbjct: 317 SAPTNVSDSTEPKASEV 333
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + L FS + D + D TGRSRG+GFV F+ + + + + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 187 MTGKWLG 207 K G Sbjct: 158 KEHKLNG 164 Score = 36.2 bits (82), Expect = 0.062 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQ 162 +IFVG LS + + + F + + DNKT + RG+ F++F+ ++ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + L FS + D + D TGRSRG+GFV F+ + + + + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 187 MTGKWLG 207 K G Sbjct: 158 KEHKLNG 164 Score = 36.2 bits (82), Expect = 0.062 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQ 162 +IFVG LS + + + F + + DNKT + RG+ F++F+ ++ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 40.4 bits (93), Expect = 0.003 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +V LSS L FS Y A+V+ + ++ +R YGFV+ +EA I Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486 Query: 181 -----TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGS 345 TE+ GK + + + A K ++++ D+ T+ S+N E D Sbjct: 487 NHLHKTELHGKMISVEKAKSEPAGK-RVPDRRDGDSKKEKTSTSDRSANLKREEKGD--R 543 Query: 346 KENPENNPDFTT 381 K++ + D +T Sbjct: 544 KDDAKKTDDGST 555
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 40.4 bits (93), Expect = 0.003 Identities = 29/115 (25%), Positives = 51/115 (44%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG+L V+++ L F S R++ + TG RG+G+V F N A+ ++ Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KL 345 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKEN 354 L R++R ++ +EK + N N V +G S + G + Sbjct: 346 NNSELMGRKLR---VMRSVNKEKLKQQNSNPSVKKDGSKSKQRLNFTSKEGKSHS 397 Score = 34.3 bits (77), Expect = 0.23 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Frame = +1 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTHGEAA 531 D +V+VGNL + V+ L HF L G+I VR+ + +GFG++ + Sbjct: 283 DKRSVFVGNLPYRVDESALEEHF--LDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVH 340 Query: 532 LAIQM 546 LA+++ Sbjct: 341 LALKL 345
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G LS + L FS + D + D TGRSRG+GFV F+ + + + + Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155 Query: 187 MTGKWLG 207 K G Sbjct: 156 KEHKLNG 162 Score = 36.2 bits (82), Expect = 0.062 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQ 162 +IFVG LS + + + F + + DNKT + RG+ F++F+ ++ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQ 162 ++FVG LS E + L F Y V D +TGRSRG+ F+ F N + Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE 108 Score = 30.4 bits (67), Expect = 3.4 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Frame = +1 Query: 262 ETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFY 441 E + A TNG S N + + Q D ++VG L E EL HF Sbjct: 28 ENGDAGAAGSTNGSSDNQSAASGQ----------RDDDRKLFVGGLSWETTEKELRDHFG 77 Query: 442 NLGVGAIEEVRVQ------QEKGFGFIRYS 513 G IE + V+ + +GF FI ++ Sbjct: 78 K--YGEIESINVKTDPQTGRSRGFAFIVFT 105
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETA 177 ++F+G L D L A F + + D VM D +T RSRG+GF+++ + + A Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA 88 Score = 35.8 bits (81), Expect = 0.081 Identities = 14/60 (23%), Positives = 32/60 (53%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L + ++ ++ F + + D ++ D +TG+ RG+ FV F + + + + Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Score = 33.1 bits (74), Expect = 0.52 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = +1 Query: 295 NGGSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG----VGAI 462 NG S+ + QD S PE+ +++G L + + L HF G V + Sbjct: 9 NGNSNGHDDDFPQD--SITEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVM 63 Query: 463 EEVRVQQEKGFGFIRYS 513 ++ R ++ +GFGFI YS Sbjct: 64 KDPRTKRSRGFGFITYS 80
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 40.4 bits (93), Expect = 0.003 Identities = 22/91 (24%), Positives = 40/91 (43%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+F+ ++ + FS Y + + D +TG+S+G+ +V F+N A TA E Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHN 279 + + R + A + + E D N Sbjct: 391 LDKQIFQGRLLHILPADAKKSHKLDEFDLKN 421 Score = 32.7 bits (73), Expect = 0.68 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRS-RGYGFVSFRNQQEAETAIT 183 +I V +L E ++ FS++ RV K +S RG+ FV F +EAE A+ Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRV--PKKFDKSARGFAFVEFLLPKEAENAMD 810 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETD 270 ++ G L R++ + + + +Q+ + Sbjct: 811 QLQGVHLLGRRLVMEFVEQDPEDVEQQIE 839
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +1 Query: 16 VGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTG 195 V +L + A + S +++ +TG S+GYGF + + A A +++ G Sbjct: 136 VANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLG 195 Query: 196 KWLGSRQIRCNW 231 K LG R + +W Sbjct: 196 KPLGPRTLYVHW 207
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +1 Query: 16 VGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTG 195 V +L + A + S +++ +TG S+GYGF + + A A +++ G Sbjct: 136 VANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLG 195 Query: 196 KWLGSRQIRCNW 231 K LG R + +W Sbjct: 196 KPLGPRTLYVHW 207
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 40.0 bits (92), Expect = 0.004 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 5/183 (2%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG + + + F + + + ++ D +TG+ +G FV + ++A+ AI Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 + HN + L G ++ G +E Sbjct: 181 L----------------------------HNQITLPGG---TGPVQVRYADGERER-IGT 208 Query: 367 PDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEV-----RVQQEKGFGFIRYSTHGEAA 531 +F ++VG+L + E+ F L G +E+V +Q +G GF++YS+ A Sbjct: 209 LEF-KLFVGSLNKQATEKEVEEIF--LQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAM 265 Query: 532 LAI 540 AI Sbjct: 266 AAI 268 Score = 33.5 bits (75), Expect = 0.40 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++FVG L+ + + + F + D +M D +SRG GFV + +++ A AI Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDG 270 Query: 187 MTGKW 201 + G + Sbjct: 271 LNGTY 275
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV LS + + TL F +AR++ D TG S+G+GFV F ++A+ A M Sbjct: 504 LFVRGLSEDTTEETLKEAFD---GSVNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 190 TGKWLGSRQIRCNWA 234 + ++ ++A Sbjct: 561 EDGEIDGNKVTLDFA 575
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 40.0 bits (92), Expect = 0.004 Identities = 27/107 (25%), Positives = 48/107 (44%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+ V ++ D L F + D ++++ + S+G+GFV+F N +A+ A + Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 174 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEA 327 + G + R+I N NA + T+ TNG N + A Sbjct: 175 LHGTVVEGRKIEVN-----NATARVMTNKKTVNPYTNGWKLNPVVGA 216
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 40.0 bits (92), Expect = 0.004 Identities = 27/107 (25%), Positives = 48/107 (44%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+ V ++ D L F + D ++++ + S+G+GFV+F N +A+ A + Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 175 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEA 327 + G + R+I N NA + T+ TNG N + A Sbjct: 176 LHGTVVEGRKIEVN-----NATARVMTNKKTVNPYTNGWKLNPVVGA 217
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G IF+G L ++ + L + R+M D G +RGY FV+F N+QEA+ AI Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAI 113 Query: 181 TEM 189 ++ Sbjct: 114 KQL 116
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 RIFVG + + L F + + D +++ + G+S+GYGF++F + +AE I + Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFETEDQAE-EIRK 125 Query: 187 MTGKWLGSRQIRCN 228 +T K L R + N Sbjct: 126 LTPKQLEFRSRKLN 139
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 39.7 bits (91), Expect = 0.006 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 5/140 (3%) Frame = +1 Query: 124 SRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGG 303 S G+GFV+FR + +A+ A+ M G Q D H V + Sbjct: 644 SMGFGFVAFRTKDQAQAALKVMDG---------------------QVLDAHKISVKASHR 682 Query: 304 SSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRV-- 477 +AA E ++ +K+ T + V NL EV + E+ F G + +R+ Sbjct: 683 GLDAAEERRREDMAKKAANQG---TKLVVKNLPFEVTKKEVRTLF--SAYGKLVALRIPK 737 Query: 478 ---QQEKGFGFIRYSTHGEA 528 Q +GF F +ST EA Sbjct: 738 KFNQSSRGFAFAEFSTAKEA 757
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 39.3 bits (90), Expect = 0.007 Identities = 27/90 (30%), Positives = 42/90 (46%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G ++V LSS A L + FS + A+V+ + ++ +R YGFV+ EA I Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETD 270 + + L R I A K EK+ +D Sbjct: 510 SHLHRTELHGRMISVEKA-KNEPSEKKSSD 538
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 39.3 bits (90), Expect = 0.007 Identities = 29/120 (24%), Positives = 55/120 (45%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+ + +LS + ++ L A F+ Y + + + G+ RG+ FV F+N EA A+ Sbjct: 114 RLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQFKNLLEAGKALKG 172 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENN 366 K + R + +WA A++K + H +S ++ + D KE+ + N Sbjct: 173 ANMKEIKGRTVAVDWAV---AKDKYKDAQH---------ASAPGVKKSSDRKPKESGKKN 220 Score = 35.4 bits (80), Expect = 0.11 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 5/186 (2%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FVG L L FS V+ + + RG+G+V+F ++ + A+ Sbjct: 2 GLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPE 360 E+T + G + K + K+ N NA A A++ Sbjct: 62 KEIT-TFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKK-------- 112 Query: 361 NNPDFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE-----KGFGFIRYSTHGE 525 + + NL + + D+L F + G + EV + ++ +GF F+++ E Sbjct: 113 -----ARLIIRNLSFKCSEDDLKAVFTH--YGTVLEVNIPKKPDGKMRGFAFVQFKNLLE 165 Query: 526 AALAIQ 543 A A++ Sbjct: 166 AGKALK 171 Score = 30.4 bits (67), Expect = 3.4 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 6/95 (6%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +F+ +LS + + L + RV+ T S+G F F Q+ A+ + Sbjct: 323 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 382 Query: 181 ------TEMTGKWLGSRQIRCNWATKTNAEEKQET 267 E G L RQ++ + A + K +T Sbjct: 383 AAASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLQT 417
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 39.3 bits (90), Expect = 0.007 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = +1 Query: 97 VMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNW 231 +++ +TG+S+GYGF + + A A +++ GK LG R + +W Sbjct: 163 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 207
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/77 (24%), Positives = 37/77 (48%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FV + E + ++ F+ Y + + D +TG +GY V + +EA+ A+ Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131 Query: 181 TEMTGKWLGSRQIRCNW 231 + G+ L + I +W Sbjct: 132 EGLNGQDLMGQPISVDW 148
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/77 (24%), Positives = 37/77 (48%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G +FV + E + ++ F+ Y + + D +TG +GY V + +EA+ A+ Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131 Query: 181 TEMTGKWLGSRQIRCNW 231 + G+ L + I +W Sbjct: 132 EGLNGQDLMGQPISVDW 148
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/98 (24%), Positives = 41/98 (41%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ D L F + V+ D KTG S Y F+ + ++ E A +M Sbjct: 253 LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKM 312 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGG 303 G + R+I +++ + + N+ TN G Sbjct: 313 QGVLIDDRRIHVDFSQSVSKLSDVWRKDTNSKRRTNAG 350
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 38.9 bits (89), Expect = 0.010 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 +R+FV +L + +++ L FS + + V +D ++ S+G+ +V + A A Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYK 360 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQETDNH--NAVVLTNGGSSNAAMEANQDTGSKENP 357 E+ GK R + AT A++ + D H + + L +EA+ T S + Sbjct: 361 ELDGKHFQGRLMHILPAT---AKKTYKIDEHELSKLPLKKQKQIKRKLEASSSTFSWNSL 417 Query: 358 ENNPD 372 N D Sbjct: 418 YMNTD 422 Score = 35.4 bits (80), Expect = 0.11 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRS-RGYGFVSFRNQQEAETAI 180 T+I + +L + + + F Y RV K RS RG+GF F + +EAE A+ Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRV--PKKFDRSARGFGFADFVSAREAENAM 759 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQETD 270 + L R++ +A + + +QE + Sbjct: 760 DALKNTHLLGRRLVLEFANEEAVDPEQEIE 789
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.9 bits (89), Expect = 0.010 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 52/233 (22%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G IF+G L ++ + L + R+M D G +RGY FV+F N+ EA+ AI Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAKNAI 113 Query: 181 TEM------TGKWLG------SRQIRCNWATKTNAEEK---------------------- 258 ++ G+ LG + ++ KT E+ Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAA 173 Query: 259 QETDNHNAVVLTNGGSSNAAMEANQDTGSK------------ENPENNPDFTT------V 384 +T N + AAM + + PE D T + Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKIL 233 Query: 385 YVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 YV NL + + + + F N+ GA+E RV++ + + F+ +S +A A++ Sbjct: 234 YVRNLMLSTSEEMIEKEFNNIKPGAVE--RVKKIRDYAFVHFSNREDAVEAMK 284
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 38.9 bits (89), Expect = 0.010 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 52/233 (22%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G IF+G L ++ + L + R+M D G +RGY FV+F N+ EA+ AI Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAKNAI 113 Query: 181 TEM------TGKWLG------SRQIRCNWATKTNAEEK---------------------- 258 ++ G+ LG + ++ KT E+ Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAA 173 Query: 259 QETDNHNAVVLTNGGSSNAAMEANQDTGSK------------ENPENNPDFTT------V 384 +T N + AAM + + PE D T + Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233 Query: 385 YVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALAIQ 543 YV NL + + + + F N+ GA+E RV++ + + F+ +S +A A++ Sbjct: 234 YVRNLMLSTSEEMIEKEFNNIKPGAVE--RVKKIRDYAFVHFSNREDAVEAMK 284
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G R+F+G L+ + + F Y D + RG+GFV F + ++A+ A+ Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAV 54 Query: 181 TEMTGKWLGSRQI 219 E+ GK L S ++ Sbjct: 55 YELDGKELCSERV 67
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G R+F+G L+ + + F Y D + RG+GFV F + ++A+ A+ Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAV 54 Query: 181 TEMTGKWLGSRQI 219 E+ GK L S ++ Sbjct: 55 YELDGKELCSERV 67
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ D L FS + V+ D KTG S Y F+ F +++ E A +M Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 190 TGKWLGSRQIRCNWA 234 + R+I +++ Sbjct: 302 DNVLIDDRRIHVDFS 316
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ D L FS + V+ D KTG S Y F+ F +++ E A +M Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 190 TGKWLGSRQIRCNWA 234 + R+I +++ Sbjct: 302 DNVLIDDRRIHVDFS 316
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +1 Query: 1 GTRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 180 G R+F+G L+ + + F Y D + RG+GFV F + ++A+ A+ Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAV 54 Query: 181 TEMTGKWLGSRQI 219 E+ GK L S ++ Sbjct: 55 YELDGKELCSERV 67
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 38.1 bits (87), Expect = 0.016 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Frame = +1 Query: 250 EEKQETDNHNAVVLTNG---GSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRD 420 +++Q+ + NG S N + + K + + ++VGNL ++ + Sbjct: 31 QQQQQQQQPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEE 90 Query: 421 ELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 E+ + F G EV + ++KGFGFIR T A +A Sbjct: 91 EMRKLFEKYGKAG--EVFIHKDKGFGFIRLETRTLAEIA 127 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 +R+FVG+L ++ + + F Y + + D +G+GF+ + AE A Sbjct: 76 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKV 129 Query: 184 EMTGKWLGSRQIRCNWA 234 E+ L +Q+R +A Sbjct: 130 ELDNMPLRGKQLRVRFA 146
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 38.1 bits (87), Expect = 0.016 Identities = 25/110 (22%), Positives = 50/110 (45%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+++G LS V + + FS Y + + GYGFV F + ++A+ A+ E Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYE 54 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQD 336 + GK L ++ A +++ D ++ + GG ++ + +D Sbjct: 55 LNGKELCGERVIVEHA----RGPRRDRDGYSYGSRSGGGGYSSRRTSGRD 100
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 38.1 bits (87), Expect = 0.016 Identities = 21/77 (27%), Positives = 39/77 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+ V ++ D L F + D ++++ + S+G+GFV+F N +A+ A + Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 179 Query: 187 MTGKWLGSRQIRCNWAT 237 + G + R+I N AT Sbjct: 180 LHGTVVEGRKIEVNNAT 196
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 38.1 bits (87), Expect = 0.016 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Frame = +1 Query: 250 EEKQETDNHNAVVLTNG---GSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRD 420 +++Q+ + NG S N + + K + + ++VGNL ++ + Sbjct: 34 QQQQQQQQPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEE 93 Query: 421 ELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 E+ + F G EV + ++KGFGFIR T A +A Sbjct: 94 EMRKLFEKYGKAG--EVFIHKDKGFGFIRLETRTLAEIA 130 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 +R+FVG+L ++ + + F Y + + D +G+GF+ + AE A Sbjct: 79 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKV 132 Query: 184 EMTGKWLGSRQIRCNWA 234 E+ L +Q+R +A Sbjct: 133 ELDNMPLRGKQLRVRFA 149
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 37.7 bits (86), Expect = 0.021 Identities = 16/61 (26%), Positives = 32/61 (52%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+F+ ++ + + FS Y + V D +TG+S+G+ +V F++ + A A E Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 187 M 189 + Sbjct: 362 L 362 Score = 33.5 bits (75), Expect = 0.40 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRS-RGYGFVSFRNQQEAETAIT 183 +I V +L E ++ FS++ RV K +S RG+ FV F EAE A+ Sbjct: 713 KIIVKNLPFEATRKDVFELFSSFGQLKSVRV--PKKFDKSARGFAFVEFLLPSEAENAMD 770 Query: 184 EMTGKWLGSRQIRCNWATKTNAEEKQE 264 ++ G L R++ +A + + + +++ Sbjct: 771 QLQGVHLLGRRLVMQYAEQESDDVEEQ 797
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 37.7 bits (86), Expect = 0.021 Identities = 14/70 (20%), Positives = 37/70 (52%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV ++ + ++ L F Y ++++ ++G+ RGY F+ + ++++ +A Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 190 TGKWLGSRQI 219 GK + R++ Sbjct: 165 DGKKIDGRRV 174
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 37.7 bits (86), Expect = 0.021 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYAC----FSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETA 177 IFV L++ ++D L F Y + +V+ DN +R Y FV + N +A+ A Sbjct: 95 IFVASLAAALSDDELCLSVTENFKKYGDLARVKVLRDNA---NRPYAFVQYNNDHDAKHA 151 Query: 178 ITEMTGKWLGSRQIRC 225 + G L R++RC Sbjct: 152 LIRAQGTLLNGRRLRC 167 Score = 34.3 bits (77), Expect = 0.23 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = +1 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRV--QQEKGFGFIRYSTHGEAALAIQ 543 D +++VG L E R+EL+R F G I+++ + + F FI+Y T AA A++ Sbjct: 344 DKRSIFVGQLDKETTREELNRRFST--HGKIQDINLIFKPTNIFAFIKYETEEAAAAALE 401
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 37.4 bits (85), Expect = 0.028 Identities = 24/90 (26%), Positives = 44/90 (48%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FVG+L +V ++ + F S R++ D TG +G+G+V F N A+ ++ Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KL 347 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHN 279 L R++R ++ +EK + N N Sbjct: 348 NNSELMGRKLR---VMRSVNKEKFKQQNSN 374 Score = 36.6 bits (83), Expect = 0.047 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 6/65 (9%) Frame = +1 Query: 370 DFTTVYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQE------KGFGFIRYSTHGEAA 531 D +V+VGNL ++V + +HF L G+I VR+ ++ KGFG++ + Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHF--LDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVH 342 Query: 532 LAIQM 546 LA+++ Sbjct: 343 LALKL 347
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 37.4 bits (85), Expect = 0.028 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 ++VGNL ++ +E+ + F G EV + ++KGFGFIR T A +A Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKDKGFGFIRLETRTLAEIA 125 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 +R+FVG+L ++ + + F Y + + D +G+GF+ + AE A Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKV 127 Query: 184 EMTGKWLGSRQIRCNWA 234 E+ L +Q+R +A Sbjct: 128 ELDNMPLRGKQLRVRFA 144
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 37.4 bits (85), Expect = 0.028 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 ++VGNL ++ +E+ + F G EV + ++KGFGFIR T A +A Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKDKGFGFIRLETRTLAEIA 125 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIT 183 +R+FVG+L ++ + + F Y + + D +G+GF+ + AE A Sbjct: 74 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKV 127 Query: 184 EMTGKWLGSRQIRCNWA 234 E+ L +Q+R +A Sbjct: 128 ELDNMPLRGKQLRVRFA 144
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 37.4 bits (85), Expect = 0.028 Identities = 17/71 (23%), Positives = 37/71 (52%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L + +ND + +++ ++ D+ TG S+GY F + + + AI Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 187 MTGKWLGSRQI 219 + G LG +++ Sbjct: 320 LNGMQLGDKKL 330
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 37.4 bits (85), Expect = 0.028 Identities = 17/71 (23%), Positives = 37/71 (52%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 ++F+G L + +ND + +++ ++ D+ TG S+GY F + + + AI Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 319 Query: 187 MTGKWLGSRQI 219 + G LG +++ Sbjct: 320 LNGMQLGDKKL 330
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 37.4 bits (85), Expect = 0.028 Identities = 14/70 (20%), Positives = 36/70 (51%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV ++ + ++ L F Y +++ ++G+ RGY F+ + ++++ +A Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 190 TGKWLGSRQI 219 GK + R++ Sbjct: 165 DGKKIDGRRV 174
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 37.4 bits (85), Expect = 0.028 Identities = 23/102 (22%), Positives = 46/102 (45%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 +IF+G L + +ND + ++ ++ D TG S+GY F + + + +I Sbjct: 208 KIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAG 267 Query: 187 MTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSN 312 + G LG +++ A+ + + +V+L G SN Sbjct: 268 LNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSN 309
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 37.4 bits (85), Expect = 0.028 Identities = 14/70 (20%), Positives = 36/70 (51%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV ++ + ++ L F Y +++ ++G+ RGY F+ + ++++ +A Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 190 TGKWLGSRQI 219 GK + R++ Sbjct: 165 DGKKIDGRRV 174
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 37.0 bits (84), Expect = 0.036 Identities = 17/76 (22%), Positives = 35/76 (46%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 I++G + + + L F+ + + + R+ KTG S+GY +V + + A+ M Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTM 102 Query: 190 TGKWLGSRQIRCNWAT 237 R ++C + T Sbjct: 103 NNYLFCERLLKCEFVT 118
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 37.0 bits (84), Expect = 0.036 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+FV +LS E ++ L FS + + V +D + S+G+ +V + + A A Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 187 MTGK 198 + GK Sbjct: 356 LDGK 359 Score = 33.5 bits (75), Expect = 0.40 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = +1 Query: 4 TRIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRS-RGYGFVSFRNQQEAETAI 180 T+I + +L + + + F Y RV K RS RG+GF F + +EAE A+ Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRV--PKKFDRSARGFGFADFVSAREAENAM 754 Query: 181 TEMTGKWLGSRQIRCNWATKTNAEEKQE 264 + L R++ +A + + ++E Sbjct: 755 DALKNTHLLGRRLVLEFANEEAIDAEEE 782
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 36.6 bits (83), Expect = 0.047 Identities = 20/81 (24%), Positives = 39/81 (48%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+FVG+L +++ + F+ Y + + + +G+GF+ ++ AE A E Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 351 Query: 187 MTGKWLGSRQIRCNWATKTNA 249 + + RQ+R +AT A Sbjct: 352 LDDTPMRGRQLRVRFATHAAA 372 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 ++VGNL ++ DE R F G EV + + KGFGFI+ + A +A Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPG--EVFINKGKGFGFIKLESRALAEIA 348
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 36.6 bits (83), Expect = 0.047 Identities = 23/83 (27%), Positives = 39/83 (46%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV + +V D L FS + A V+ D RSRG+GFVSF + + + A+ + Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 86 Query: 190 TGKWLGSRQIRCNWATKTNAEEK 258 +R + A + + +K Sbjct: 87 RKTKFNGHILRVDIAKRRDRSKK 109 Score = 35.0 bits (79), Expect = 0.14 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Frame = +1 Query: 118 GRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATK------TNAEEKQETDN 273 GRSRGYGFV FR+ + A +G R + C+ T N +EK++ DN Sbjct: 550 GRSRGYGFVEFRDHKNA----------LMGLRWLNCHAVTSDEILEGLNDDEKKQVDN 597
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 36.6 bits (83), Expect = 0.047 Identities = 20/81 (24%), Positives = 39/81 (48%) Frame = +1 Query: 7 RIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITE 186 R+FVG+L +++ + F+ Y + + + +G+GF+ ++ AE A E Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 343 Query: 187 MTGKWLGSRQIRCNWATKTNA 249 + + RQ+R +AT A Sbjct: 344 LDDTPMRGRQLRVRFATHAAA 364 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +1 Query: 382 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEKGFGFIRYSTHGEAALA 537 ++VGNL ++ DE R F G EV + + KGFGFI+ + A +A Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPG--EVFINKGKGFGFIKLESRALAEIA 340
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 36.6 bits (83), Expect = 0.047 Identities = 37/142 (26%), Positives = 56/142 (39%) Frame = +1 Query: 10 IFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEM 189 +FV L+ L FS + V+ D KTG S Y F+ F + +AE A +M Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323 Query: 190 TGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNGGSSNAAMEANQDTGSKENPENNP 369 + R+I W + + + D V N GS A A+ +G+ E ++ Sbjct: 324 QNVLVDDRRI---WVDFSQSVSRLHGD---WVKKRNAGSD--APRAHYQSGADEQSVDS- 374 Query: 370 DFTTVYVGNLGHEVNRDELHRH 435 Y N G R + RH Sbjct: 375 -----YRPNAGGYQKRGDDRRH 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.129 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,127,172 Number of Sequences: 219361 Number of extensions: 1659401 Number of successful extensions: 4628 Number of sequences better than 10.0: 391 Number of HSP's better than 10.0 without gapping: 4072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4547 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
