| Clone Name | bags22d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483366.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1878 Score = 676 bits (341), Expect = 0.0 Identities = 488/537 (90%) Strand = Plus / Plus Query: 10 atttttgttggtgatttgagttctgaagtgaatgatgcaactctttatgcctgtttctca 69 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 atttttgttggtgatttaagttctgaagtgaatgatgcaactctttatgcctgtttctca 769 Query: 70 acatatccttcttgttctgatgctcgggtcatgtgggataacaaaactggacgctccaga 129 ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 770 gcatatccttcttgttctgatgctcgagtcatgtgggataacaaaaccggacgctccaga 829 Query: 130 ggttatggctttgtctccttccgtaatcagcaggaagctgaaactgctataactgaaatg 189 |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 830 ggttatggttttgtctccttccgtaatcaacaggaagctgagactgctataactgaaatg 889 Query: 190 actggtaaatggcttggcagcagacaaataaggtgcaactgggcaacaaagaccaacgca 249 ||||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||| ||| Sbjct: 890 actgggaaatggcttggaagcagacaaataaggtgtaattgggcaacaaagaacaatgca 949 Query: 250 gaagagaaacaagaaacagacaatcataatgcagttgtactaacaaatggtggttccagt 309 ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||| Sbjct: 950 gaagagaaacaagaaactgacaaccataatgcagttgtactaacaaatggtagttctagt 1009 Query: 310 aatgcagcaatggaggcaaaccaggatacaggaagcaaagaaaatccagagaacaaccct 369 ||| ||| ||||||||||| ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 1010 aatccaggaatggaggcaagtcaggacaccggaagtaaagagaatccagagaacaaccct 1069 Query: 370 gatttcacaacggtgtatgttggcaaccttgggcacgaggttaatcgggatgagcttcac 429 |||| || ||||||||||||||||||||||| || |||||||| || |||||||||||| Sbjct: 1070 gattgtactacggtgtatgttggcaaccttggacatgaggttaaccgagatgagcttcac 1129 Query: 430 cgccatttctacaacttaggggtcggtgccattgaggaagttcgtgttcaacaggaaaaa 489 ||||| ||||| || ||||| || || || |||||||||||||| ||||||||||| ||| Sbjct: 1130 cgccacttctataatttaggtgttggggctattgaggaagttcgcgttcaacaggataaa 1189 Query: 490 gggtttggatttataaggtacagtacccatggtgaagcagcattagctattcagatg 546 || ||||| ||| | || ||||||| |||||| ||||||||||| |||||||||||| Sbjct: 1190 ggatttgggtttgtgagatacagtaaccatggcgaagcagcattggctattcagatg 1246
>dbj|AK069912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037G11, full insert sequence Length = 1877 Score = 676 bits (341), Expect = 0.0 Identities = 488/537 (90%) Strand = Plus / Plus Query: 10 atttttgttggtgatttgagttctgaagtgaatgatgcaactctttatgcctgtttctca 69 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 atttttgttggtgatttaagttctgaagtgaatgatgcaactctttatgcctgtttctca 768 Query: 70 acatatccttcttgttctgatgctcgggtcatgtgggataacaaaactggacgctccaga 129 ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 769 gcatatccttcttgttctgatgctcgagtcatgtgggataacaaaaccggacgctccaga 828 Query: 130 ggttatggctttgtctccttccgtaatcagcaggaagctgaaactgctataactgaaatg 189 |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 829 ggttatggttttgtctccttccgtaatcaacaggaagctgagactgctataactgaaatg 888 Query: 190 actggtaaatggcttggcagcagacaaataaggtgcaactgggcaacaaagaccaacgca 249 ||||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||| ||| Sbjct: 889 actgggaaatggcttggaagcagacaaataaggtgtaattgggcaacaaagaacaatgca 948 Query: 250 gaagagaaacaagaaacagacaatcataatgcagttgtactaacaaatggtggttccagt 309 ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||| Sbjct: 949 gaagagaaacaagaaactgacaaccataatgcagttgtactaacaaatggtagttctagt 1008 Query: 310 aatgcagcaatggaggcaaaccaggatacaggaagcaaagaaaatccagagaacaaccct 369 ||| ||| ||||||||||| ||||| || ||||| ||||| |||||||||||||||||| Sbjct: 1009 aatccaggaatggaggcaagtcaggacaccggaagtaaagagaatccagagaacaaccct 1068 Query: 370 gatttcacaacggtgtatgttggcaaccttgggcacgaggttaatcgggatgagcttcac 429 |||| || ||||||||||||||||||||||| || |||||||| || |||||||||||| Sbjct: 1069 gattgtactacggtgtatgttggcaaccttggacatgaggttaaccgagatgagcttcac 1128 Query: 430 cgccatttctacaacttaggggtcggtgccattgaggaagttcgtgttcaacaggaaaaa 489 ||||| ||||| || ||||| || || || |||||||||||||| ||||||||||| ||| Sbjct: 1129 cgccacttctataatttaggtgttggggctattgaggaagttcgcgttcaacaggataaa 1188 Query: 490 gggtttggatttataaggtacagtacccatggtgaagcagcattagctattcagatg 546 || ||||| ||| | || ||||||| |||||| ||||||||||| |||||||||||| Sbjct: 1189 ggatttgggtttgtgagatacagtaaccatggcgaagcagcattggctattcagatg 1245
>gb|AY103766.1| Zea mays PCO100830 mRNA sequence Length = 1823 Score = 636 bits (321), Expect = e-179 Identities = 483/537 (89%) Strand = Plus / Plus Query: 10 atttttgttggtgatttgagttctgaagtgaatgatgcaactctttatgcctgtttctca 69 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 659 atttttgttggtgatttaagttctgaagtgaatgatgcaactctttatgcctgtttctca 718 Query: 70 acatatccttcttgttctgatgctcgggtcatgtgggataacaaaactggacgctccaga 129 ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct: 719 gcatatccttcttgttctgatgctcgagtcatgtgggacaacaaaactggacgttccagg 778 Query: 130 ggttatggctttgtctccttccgtaatcagcaggaagctgaaactgctataactgaaatg 189 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 779 ggttatggttttgtctccttccgtaatcaacaggaagctgaaactgctataactgaaatg 838 Query: 190 actggtaaatggcttggcagcagacaaataaggtgcaactgggcaacaaagaccaacgca 249 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| | Sbjct: 839 actggaaaatggcttggaagcagacaaataaggtgcaattgggcaacaaagaccaattcg 898 Query: 250 gaagagaaacaagaaacagacaatcataatgcagttgtactaacaaatggtggttccagt 309 |||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct: 899 gaagagaaaccagaaactgacaatcataatgcagttgtactaacaaatggtagctccacc 958 Query: 310 aatgcagcaatggaggcaaaccaggatacaggaagcaaagaaaatccagagaacaaccct 369 ||| |||||| || |||| ||||||| ||||||| ||||| || ||||||||||| ||| Sbjct: 959 aattcagcaacagatgcaagccaggatgcaggaagtaaagagaacccagagaacaatcct 1018 Query: 370 gatttcacaacggtgtatgttggcaaccttgggcacgaggttaatcgggatgagcttcac 429 |||| || || || ||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 1019 gattgtactactgtatatgttggcaaccttggacatgaggttaatcgggatgagcttcac 1078 Query: 430 cgccatttctacaacttaggggtcggtgccattgaggaagttcgtgttcaacaggaaaaa 489 ||||| ||||| ||||| |||||||| || || |||||| | |||||||||||||| ||| Sbjct: 1079 cgccacttctataacttgggggtcggggcaatcgaggaaatccgtgttcaacaggacaaa 1138 Query: 490 gggtttggatttataaggtacagtacccatggtgaagcagcattagctattcagatg 546 ||||||||||| | || || || ||||| || |||||||||||||||||||||||| Sbjct: 1139 gggtttggattcgtgagatatagcacccacggggaagcagcattagctattcagatg 1195
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 161 bits (81), Expect = 3e-36 Identities = 108/117 (92%) Strand = Plus / Minus Query: 196 aaatggcttggcagcagacaaataaggtgcaactgggcaacaaagaccaacgcagaagag 255 ||||||||||| ||||||||||||||||| || ||||||||||||| ||| ||||||||| Sbjct: 25853585 aaatggcttggaagcagacaaataaggtgtaattgggcaacaaagaacaatgcagaagag 25853526 Query: 256 aaacaagaaacagacaatcataatgcagttgtactaacaaatggtggttccagtaat 312 ||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct: 25853525 aaacaagaaactgacaaccataatgcagttgtactaacaaatggtagttctagtaat 25853469 Score = 137 bits (69), Expect = 4e-29 Identities = 75/77 (97%) Strand = Plus / Minus Query: 10 atttttgttggtgatttgagttctgaagtgaatgatgcaactctttatgcctgtttctca 69 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 25854765 atttttgttggtgatttaagttctgaagtgaatgatgcaactctttatgcctgtttctca 25854706 Query: 70 acatatccttcttgttc 86 |||||||||||||||| Sbjct: 25854705 gcatatccttcttgttc 25854689 Score = 127 bits (64), Expect = 4e-26 Identities = 121/140 (86%) Strand = Plus / Minus Query: 407 aggttaatcgggatgagcttcaccgccatttctacaacttaggggtcggtgccattgagg 466 ||||||| || ||||||||||||||||| ||||| || ||||| || || || ||||||| Sbjct: 25852670 aggttaaccgagatgagcttcaccgccacttctataatttaggtgttggggctattgagg 25852611 Query: 467 aagttcgtgttcaacaggaaaaagggtttggatttataaggtacagtacccatggtgaag 526 ||||||| ||||||||||| ||||| ||||| ||| | || ||||||| |||||| |||| Sbjct: 25852610 aagttcgcgttcaacaggataaaggatttgggtttgtgagatacagtaaccatggcgaag 25852551 Query: 527 cagcattagctattcagatg 546 ||||||| |||||||||||| Sbjct: 25852550 cagcattggctattcagatg 25852531 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 87 tgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctc 146 ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 25854434 tgatgctcgagtcatgtgggataacaaaaccggacgctccagaggttatggttttgtctc 25854375 Query: 147 cttccgtaatcagcagg 163 |||||||||||| |||| Sbjct: 25854374 cttccgtaatcaacagg 25854358 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 312 tgcagcaatggaggcaaaccaggatacaggaagcaaagaaaatccagagaacaaccctga 371 ||||| ||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| Sbjct: 25852945 tgcaggaatggaggcaagtcaggacaccggaagtaaagagaatccagagaacaaccctga 25852886 Query: 372 tttcacaacggtgtatgttggcaaccttgggcacgaggt 410 || || ||||||||||||||||||||||| || ||||| Sbjct: 25852885 ttgtactacggtgtatgttggcaaccttggacatgaggt 25852847 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 159 gcaggaagctgaaactgctataactgaaatgactggtaaa 198 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 25853725 gcaggaagctgagactgctataactgaaatgactggtaaa 25853686
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 161 bits (81), Expect = 3e-36 Identities = 108/117 (92%) Strand = Plus / Minus Query: 196 aaatggcttggcagcagacaaataaggtgcaactgggcaacaaagaccaacgcagaagag 255 ||||||||||| ||||||||||||||||| || ||||||||||||| ||| ||||||||| Sbjct: 39372 aaatggcttggaagcagacaaataaggtgtaattgggcaacaaagaacaatgcagaagag 39313 Query: 256 aaacaagaaacagacaatcataatgcagttgtactaacaaatggtggttccagtaat 312 ||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct: 39312 aaacaagaaactgacaaccataatgcagttgtactaacaaatggtagttctagtaat 39256 Score = 137 bits (69), Expect = 4e-29 Identities = 75/77 (97%) Strand = Plus / Minus Query: 10 atttttgttggtgatttgagttctgaagtgaatgatgcaactctttatgcctgtttctca 69 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 40552 atttttgttggtgatttaagttctgaagtgaatgatgcaactctttatgcctgtttctca 40493 Query: 70 acatatccttcttgttc 86 |||||||||||||||| Sbjct: 40492 gcatatccttcttgttc 40476 Score = 127 bits (64), Expect = 4e-26 Identities = 121/140 (86%) Strand = Plus / Minus Query: 407 aggttaatcgggatgagcttcaccgccatttctacaacttaggggtcggtgccattgagg 466 ||||||| || ||||||||||||||||| ||||| || ||||| || || || ||||||| Sbjct: 38457 aggttaaccgagatgagcttcaccgccacttctataatttaggtgttggggctattgagg 38398 Query: 467 aagttcgtgttcaacaggaaaaagggtttggatttataaggtacagtacccatggtgaag 526 ||||||| ||||||||||| ||||| ||||| ||| | || ||||||| |||||| |||| Sbjct: 38397 aagttcgcgttcaacaggataaaggatttgggtttgtgagatacagtaaccatggcgaag 38338 Query: 527 cagcattagctattcagatg 546 ||||||| |||||||||||| Sbjct: 38337 cagcattggctattcagatg 38318 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 87 tgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctc 146 ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 40221 tgatgctcgagtcatgtgggataacaaaaccggacgctccagaggttatggttttgtctc 40162 Query: 147 cttccgtaatcagcagg 163 |||||||||||| |||| Sbjct: 40161 cttccgtaatcaacagg 40145 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 312 tgcagcaatggaggcaaaccaggatacaggaagcaaagaaaatccagagaacaaccctga 371 ||||| ||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| Sbjct: 38732 tgcaggaatggaggcaagtcaggacaccggaagtaaagagaatccagagaacaaccctga 38673 Query: 372 tttcacaacggtgtatgttggcaaccttgggcacgaggt 410 || || ||||||||||||||||||||||| || ||||| Sbjct: 38672 ttgtactacggtgtatgttggcaaccttggacatgaggt 38634 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 159 gcaggaagctgaaactgctataactgaaatgactggtaaa 198 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 39512 gcaggaagctgagactgctataactgaaatgactggtaaa 39473
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 161 bits (81), Expect = 3e-36 Identities = 108/117 (92%) Strand = Plus / Minus Query: 196 aaatggcttggcagcagacaaataaggtgcaactgggcaacaaagaccaacgcagaagag 255 ||||||||||| ||||||||||||||||| || ||||||||||||| ||| ||||||||| Sbjct: 125796 aaatggcttggaagcagacaaataaggtgtaattgggcaacaaagaacaatgcagaagag 125737 Query: 256 aaacaagaaacagacaatcataatgcagttgtactaacaaatggtggttccagtaat 312 ||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct: 125736 aaacaagaaactgacaaccataatgcagttgtactaacaaatggtagttctagtaat 125680 Score = 137 bits (69), Expect = 4e-29 Identities = 75/77 (97%) Strand = Plus / Minus Query: 10 atttttgttggtgatttgagttctgaagtgaatgatgcaactctttatgcctgtttctca 69 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 126976 atttttgttggtgatttaagttctgaagtgaatgatgcaactctttatgcctgtttctca 126917 Query: 70 acatatccttcttgttc 86 |||||||||||||||| Sbjct: 126916 gcatatccttcttgttc 126900 Score = 127 bits (64), Expect = 4e-26 Identities = 121/140 (86%) Strand = Plus / Minus Query: 407 aggttaatcgggatgagcttcaccgccatttctacaacttaggggtcggtgccattgagg 466 ||||||| || ||||||||||||||||| ||||| || ||||| || || || ||||||| Sbjct: 124881 aggttaaccgagatgagcttcaccgccacttctataatttaggtgttggggctattgagg 124822 Query: 467 aagttcgtgttcaacaggaaaaagggtttggatttataaggtacagtacccatggtgaag 526 ||||||| ||||||||||| ||||| ||||| ||| | || ||||||| |||||| |||| Sbjct: 124821 aagttcgcgttcaacaggataaaggatttgggtttgtgagatacagtaaccatggcgaag 124762 Query: 527 cagcattagctattcagatg 546 ||||||| |||||||||||| Sbjct: 124761 cagcattggctattcagatg 124742 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 87 tgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctc 146 ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 126645 tgatgctcgagtcatgtgggataacaaaaccggacgctccagaggttatggttttgtctc 126586 Query: 147 cttccgtaatcagcagg 163 |||||||||||| |||| Sbjct: 126585 cttccgtaatcaacagg 126569 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 312 tgcagcaatggaggcaaaccaggatacaggaagcaaagaaaatccagagaacaaccctga 371 ||||| ||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| Sbjct: 125156 tgcaggaatggaggcaagtcaggacaccggaagtaaagagaatccagagaacaaccctga 125097 Query: 372 tttcacaacggtgtatgttggcaaccttgggcacgaggt 410 || || ||||||||||||||||||||||| || ||||| Sbjct: 125096 ttgtactacggtgtatgttggcaaccttggacatgaggt 125058 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 159 gcaggaagctgaaactgctataactgaaatgactggtaaa 198 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 125936 gcaggaagctgagactgctataactgaaatgactggtaaa 125897
>ref|NM_104285.2| Arabidopsis thaliana mRNA 3'-UTR binding AT1G54080 transcript variant AT1G54080.1 mRNA, complete cds Length = 1708 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| || Sbjct: 635 aaaactggacgctcaagaggctttggttttgtttccttccgtaatcagcaggatgctcaa 694 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| |||| ||| |||| |||||||||| | | |||||||| || || ||||||||| Sbjct: 695 actgccataaatgagatgaatggtaaatgggtaagtagcagacagatcagatgcaactgg 754 Query: 232 gcaacaaa 239 || ||||| Sbjct: 755 gcgacaaa 762
>ref|NM_179475.1| Arabidopsis thaliana mRNA 3'-UTR binding AT1G54080 transcript variant AT1G54080.2 mRNA, complete cds Length = 1720 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| || Sbjct: 647 aaaactggacgctcaagaggctttggttttgtttccttccgtaatcagcaggatgctcaa 706 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| |||| ||| |||| |||||||||| | | |||||||| || || ||||||||| Sbjct: 707 actgccataaatgagatgaatggtaaatgggtaagtagcagacagatcagatgcaactgg 766 Query: 232 gcaacaaa 239 || ||||| Sbjct: 767 gcgacaaa 774
>gb|AY133610.1| Arabidopsis thaliana At1g54080/F15I1_16 mRNA, complete cds Length = 1281 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| || Sbjct: 550 aaaactggacgctcaagaggctttggttttgtttccttccgtaatcagcaggatgctcaa 609 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| |||| ||| |||| |||||||||| | | |||||||| || || ||||||||| Sbjct: 610 actgccataaatgagatgaatggtaaatgggtaagtagcagacagatcagatgcaactgg 669 Query: 232 gcaacaaa 239 || ||||| Sbjct: 670 gcgacaaa 677
>gb|AF361639.1| Arabidopsis thaliana At1g54080/F15I1_16 mRNA, complete cds Length = 1763 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| || Sbjct: 696 aaaactggacgctcaagaggctttggttttgtttccttccgtaatcagcaggatgctcaa 755 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| |||| ||| |||| |||||||||| | | |||||||| || || ||||||||| Sbjct: 756 actgccataaatgagatgaatggtaaatgggtaagtagcagacagatcagatgcaactgg 815 Query: 232 gcaacaaa 239 || ||||| Sbjct: 816 gcgacaaa 823
>gb|AF348587.1| Arabidopsis thaliana clone C00207 (e) putative oligouridylate binding protein (At1g54080) mRNA, complete cds Length = 1281 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| || Sbjct: 550 aaaactggacgctcaagaggctttggttttgtttccttccgtaatcagcaggatgctcaa 609 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| |||| ||| |||| |||||||||| | | |||||||| || || ||||||||| Sbjct: 610 actgccataaatgagatgaatggtaaatgggtaagtagcagacagatcagatgcaactgg 669 Query: 232 gcaacaaa 239 || ||||| Sbjct: 670 gcgacaaa 677
>emb|BX816622.1|CNS0AD7O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1709 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||||||||| ||||| | ||| ||||| |||||||||||||||||||| ||| || Sbjct: 758 aaaactggacgctcaagaggctttggttttgtttccttccgtaatcagcaggatgctcaa 817 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| |||| ||| |||| |||||||||| | | |||||||| || || ||||||||| Sbjct: 818 actgccataaatgagatgaatggtaaatgggtaagtagcagacagatcagatgcaactgg 877 Query: 232 gcaacaaa 239 || ||||| Sbjct: 878 gcgacaaa 885
>ref|NM_112266.2| Arabidopsis thaliana mRNA 3'-UTR binding AT3G14100 mRNA, complete cds Length = 2189 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||| ||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||| || Sbjct: 646 aaaactgggcgctcgagaggctttgggtttgtttccttccgcaatcaacaggatgctcaa 705 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| || | ||| |||| |||||| ||| | | ||||||||||| || ||||||||| Sbjct: 706 actgccattaatgagatgaatggtaagtggttaagtagcagacaaatcagatgcaactgg 765 Query: 232 gc 233 || Sbjct: 766 gc 767
>gb|AY139775.1| Arabidopsis thaliana AT3g14100/MAG2_5 mRNA, complete cds Length = 1505 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||| ||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||| || Sbjct: 548 aaaactgggcgctcgagaggctttgggtttgtttccttccgcaatcaacaggatgctcaa 607 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| || | ||| |||| |||||| ||| | | ||||||||||| || ||||||||| Sbjct: 608 actgccattaatgagatgaatggtaagtggttaagtagcagacaaatcagatgcaactgg 667 Query: 232 gc 233 || Sbjct: 668 gc 669
>emb|BX823141.1|CNS0A605 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB92ZH11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1502 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||| ||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||| || Sbjct: 581 aaaactgggcgctcgagaggctttgggtttgtttccttccgcaatcaacaggatgctcaa 640 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| || | ||| |||| |||||| ||| | | ||||||||||| || ||||||||| Sbjct: 641 actgccattaatgagatgaatggtaagtggttaagtagcagacaaatcagatgcaactgg 700 Query: 232 gc 233 || Sbjct: 701 gc 702
>emb|BX825019.1|CNS0A5JR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1537 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||| ||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||| || Sbjct: 581 aaaactgggcgctcgagaggctttgggtttgtttccttccgcaatcaacaggatgctcaa 640 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| || | ||| |||| |||||| ||| | | ||||||||||| || ||||||||| Sbjct: 641 actgccattaatgagatgaatggtaagtggttaagtagcagacaaatcagatgcaactgg 700 Query: 232 gc 233 || Sbjct: 701 gc 702
>gb|BT004540.1| Arabidopsis thaliana AT3g14100/MAG2_5 gene, complete cds Length = 1284 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||| ||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||| || Sbjct: 538 aaaactgggcgctcgagaggctttgggtttgtttccttccgcaatcaacaggatgctcaa 597 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| || | ||| |||| |||||| ||| | | ||||||||||| || ||||||||| Sbjct: 598 actgccattaatgagatgaatggtaagtggttaagtagcagacaaatcagatgcaactgg 657 Query: 232 gc 233 || Sbjct: 658 gc 659
>gb|AY087692.1| Arabidopsis thaliana clone 37712 mRNA, complete sequence Length = 1557 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcaggaagctgaa 171 |||||||| ||||| ||||| | ||| ||||| |||||||| ||||| ||||| ||| || Sbjct: 601 aaaactgggcgctcgagaggctttgggtttgtttccttccgcaatcaacaggatgctcaa 660 Query: 172 actgctataactgaaatgactggtaaatggcttggcagcagacaaataaggtgcaactgg 231 ||||| || | ||| |||| |||||| ||| | | ||||||||||| || ||||||||| Sbjct: 661 actgccattaatgagatgaatggtaagtggttaagtagcagacaaatcagatgcaactgg 720 Query: 232 gc 233 || Sbjct: 721 gc 722
>emb|AJ272011.1|NPL272011 Nicotiana plumbaginifolia mRNA for oligouridylate binding protein (ubp1 gene) Length = 1668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 139 tttgtctccttccgtaatcagcaggaagctgaaactgctataactgaaatgactggtaaa 198 |||||||||||||||||||||||||| || | | ||| |||| ||| ||| ||| || Sbjct: 713 tttgtctccttccgtaatcagcaggaggcccagagtgcaataaatgacttgaatgggaag 772 Query: 199 tggcttggcagcagacaaataaggtgcaactgggcaacaaa 239 |||||||| ||||||||||| | |||||||||||| |||| Sbjct: 773 tggcttggtagcagacaaatccgctgcaactgggcagcaaa 813
>dbj|AK120437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D14, full insert sequence Length = 1950 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 858 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 917 Query: 148 ttccgtaatcagcaggaagctgaaactgctataactgaaatgactggtaaatggcttggc 207 ||| | ||||||||||| || ||| ||| |||| |||| ||| ||| || ||||| ||| Sbjct: 918 ttcagaaatcagcaggacgcacaaaatgccataaatgaactgaatgggaagtggctcggc 977 Query: 208 agcagacaaataaggtgcaactgggcaacaaag 240 | | | ||| | | ||||| |||||||||||| Sbjct: 978 aaccgtcaagttcgttgcaattgggcaacaaag 1010
>dbj|AK107324.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E09, full insert sequence Length = 1512 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Minus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 725 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 666 Query: 148 ttccgtaatcagcaggaagctgaaactgctataactgaaatgactggtaaatggcttggc 207 ||| | ||||||||||| || ||| ||| |||| |||| ||| ||| || ||||| ||| Sbjct: 665 ttcagaaatcagcaggacgcacaaaatgccataaatgaactgaatgggaagtggctcggc 606 Query: 208 agcagacaaataaggtgcaactgggcaacaaag 240 | | | ||| | | ||||| |||||||||||| Sbjct: 605 aaccgtcaagttcgttgcaattgggcaacaaag 573
>dbj|AK099639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059N16, full insert sequence Length = 1866 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 852 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 911 Query: 148 ttccgtaatcagcaggaagctgaaactgctataactgaaatgactggtaaatggcttggc 207 ||| | ||||||||||| || ||| ||| |||| |||| ||| ||| || ||||| ||| Sbjct: 912 ttcagaaatcagcaggacgcacaaaatgccataaatgaactgaatgggaagtggctcggc 971 Query: 208 agcagacaaataaggtgcaactgggcaacaaag 240 | | | ||| | | ||||| |||||||||||| Sbjct: 972 aaccgtcaagttcgttgcaattgggcaacaaag 1004
>dbj|AK060913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G02, full insert sequence Length = 1272 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 151 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 210 Query: 148 ttccgtaatcagcaggaagctgaaactgctataactgaaatgactggtaaatggcttggc 207 ||| | ||||||||||| || ||| ||| |||| |||| ||| ||| || ||||| ||| Sbjct: 211 ttcagaaatcagcaggacgcacaaaatgccataaatgaactgaatgggaagtggctcggc 270 Query: 208 agcagacaaataaggtgcaactgggcaacaaag 240 | | | ||| | | ||||| |||||||||||| Sbjct: 271 aaccgtcaagttcgttgcaattgggcaacaaag 303
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034K24, complete sequence Length = 142852 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 68444 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 68503 Query: 148 ttccgtaatcagcagg 163 ||| | |||||||||| Sbjct: 68504 ttcagaaatcagcagg 68519
>gb|DQ099067.1| Arachis stenosperma clone AS1RN9E06 microsatellite sequence Length = 736 Score = 63.9 bits (32), Expect = 5e-07 Identities = 122/152 (80%) Strand = Plus / Minus Query: 13 tttgttggtgatttgagttctgaagtgaatgatgcaactctttatgcctgtttctcaaca 72 |||||||||||||||||| | || || | |||||| ||| | | ||| || |||||| Sbjct: 156 tttgttggtgatttgagtccagaggttactgatgcgactttatttgcttgcttctcagtc 97 Query: 73 tatccttcttgttctgatgctcgggtcatgtgggataacaaaactggacgctccagaggt 132 |||||| |||||| ||||| |||| ||||||||| |||||||||| ||||| | ||| Sbjct: 96 tatcctagttgttcggatgcaagggttatgtgggatcacaaaactggccgctcaaaagga 37 Query: 133 tatggctttgtctccttccgtaatcagcagga 164 ||||| ||||| || |||||| |||| ||||| Sbjct: 36 tatggttttgtttctttccgtgatcatcagga 5
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 23318531 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 23318472 Query: 148 ttccgtaatcagcagg 163 ||| | |||||||||| Sbjct: 23318471 ttcagaaatcagcagg 23318456
>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence Length = 77605 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 61344 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 61403 Query: 148 ttccgtaatcagcagg 163 ||| | |||||||||| Sbjct: 61404 ttcagaaatcagcagg 61419
>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete sequence Length = 70311 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 53900 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 53959 Query: 148 ttccgtaatcagcagg 163 ||| | |||||||||| Sbjct: 53960 ttcagaaatcagcagg 53975
>gb|AC006577.2|F15I1 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 89035 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 112 aaaactggacgctccagaggttatggctttgtctccttccgtaatcagcagg 163 |||||||||||||| ||||| | ||| ||||| ||||||||||||||||||| Sbjct: 45697 aaaactggacgctcaagaggctttggttttgtttccttccgtaatcagcagg 45646
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 88 gatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctcc 147 |||||| |||| ||||||||| | ||||||||||| |||||||||| ||| ||||| || Sbjct: 23628441 gatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttct 23628382 Query: 148 ttccgtaatcagcagg 163 ||| | |||||||||| Sbjct: 23628381 ttcagaaatcagcagg 23628366
>ref|XM_479160.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1666 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 85 tctgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtc 144 |||||||| || || ||||||||| | || |||||| | || ||||||||||||||||| Sbjct: 677 tctgatgcccgagttatgtgggatcaaaagactggaagatctagaggttatggctttgtt 736 Query: 145 tccttccgtaatcagcagga 164 |||||| | ||||| ||||| Sbjct: 737 tccttcaggaatcaacagga 756
>dbj|AK119233.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E11, full insert sequence Length = 1665 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 85 tctgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtc 144 |||||||| || || ||||||||| | || |||||| | || ||||||||||||||||| Sbjct: 676 tctgatgcccgagttatgtgggatcaaaagactggaagatctagaggttatggctttgtt 735 Query: 145 tccttccgtaatcagcagga 164 |||||| | ||||| ||||| Sbjct: 736 tccttcaggaatcaacagga 755
>dbj|AK103536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132B05, full insert sequence Length = 1666 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 85 tctgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtc 144 |||||||| || || ||||||||| | || |||||| | || ||||||||||||||||| Sbjct: 677 tctgatgcccgagttatgtgggatcaaaagactggaagatctagaggttatggctttgtt 736 Query: 145 tccttccgtaatcagcagga 164 |||||| | ||||| ||||| Sbjct: 737 tccttcaggaatcaacagga 756
>dbj|AK059856.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A07, full insert sequence Length = 1390 Score = 54.0 bits (27), Expect = 5e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 85 tctgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtc 144 |||||||| || || ||||||||| | || |||||| | || ||||||||||||||||| Sbjct: 313 tctgatgcccgagttatgtgggatcaaaagactggaagatctagaggttatggctttgtt 372 Query: 145 tccttccgtaatcagcagg 163 |||||| | ||||| |||| Sbjct: 373 tccttcaggaatcaacagg 391
>emb|AM260507.1| Platanus acerifolia partial mRNA for oligouridylate binding protein (ouBP gene) Length = 687 Score = 54.0 bits (27), Expect = 5e-04 Identities = 126/159 (79%) Strand = Plus / Plus Query: 81 ttgttctgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctt 140 |||||| ||||| |||| ||||||||| | || ||||| ||||| ||||||| ||| || Sbjct: 264 ttgttcagatgcaagggttatgtgggatcaaaagactgggcgctcaagaggttttgggtt 323 Query: 141 tgtctccttccgtaatcagcaggaagctgaaactgctataactgaaatgactggtaaatg 200 ||| || || || ||||| ||||| || ||| ||| |||| ||| | ||||| || || Sbjct: 324 tgtttcttttcggaatcaacaggatgcccaaagtgcgataaatgatttaactggaaagtg 383 Query: 201 gcttggcagcagacaaataaggtgcaactgggcaacaaa 239 ||||||||| ||||| ||| | || ||||||||| |||| Sbjct: 384 gcttggcagtagacagatacgttgtaactgggcagcaaa 422
>ref|NM_101598.2| Arabidopsis thaliana mRNA 3'-UTR binding AT1G17370 mRNA, complete cds Length = 1772 Score = 50.1 bits (25), Expect = 0.008 Identities = 112/141 (79%) Strand = Plus / Plus Query: 100 atgtgggataacaaaactggacgctccagaggttatggctttgtctccttccgtaatcag 159 ||||||||| | |||||||| || || ||||| | ||| ||||| ||||||||||| || Sbjct: 723 atgtgggatcagaaaactgggcgttcaagaggatttggatttgtttccttccgtaaccaa 782 Query: 160 caggaagctgaaactgctataactgaaatgactggtaaatggcttggcagcagacaaata 219 ||||| || | ||||| ||| ||| || ||||| ||||||||||| ||| || ||| Sbjct: 783 caggatgcccagactgcaatagatgagataactgggaaatggcttggttccaggcagata 842 Query: 220 aggtgcaactgggcaacaaag 240 | ||||||||||| |||||| Sbjct: 843 cgttgcaactgggcgacaaag 863
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 87 tgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctc 146 |||||| || || ||||||||| | || |||||| | || ||||||||||||||||| || Sbjct: 25307243 tgatgcccgagttatgtgggatcaaaagactggaagatctagaggttatggctttgtttc 25307302 Query: 147 cttccgtaatcagcagg 163 |||| | ||||| |||| Sbjct: 25307303 cttcaggaatcaacagg 25307319
>emb|BX814983.1|CNS0ACXV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1504 Score = 50.1 bits (25), Expect = 0.008 Identities = 112/141 (79%) Strand = Plus / Plus Query: 100 atgtgggataacaaaactggacgctccagaggttatggctttgtctccttccgtaatcag 159 ||||||||| | |||||||| || || ||||| | ||| ||||| ||||||||||| || Sbjct: 556 atgtgggatcagaaaactgggcgttcaagaggatttggatttgtttccttccgtaaccaa 615 Query: 160 caggaagctgaaactgctataactgaaatgactggtaaatggcttggcagcagacaaata 219 ||||| || | ||||| ||| ||| || ||||| ||||||||||| ||| || ||| Sbjct: 616 caggatgcccagactgcaatagatgagataactgggaaatggcttggttccaggcagata 675 Query: 220 aggtgcaactgggcaacaaag 240 | ||||||||||| |||||| Sbjct: 676 cgttgcaactgggcgacaaag 696
>gb|AY085705.1| Arabidopsis thaliana clone 17210 mRNA, complete sequence Length = 1629 Score = 50.1 bits (25), Expect = 0.008 Identities = 112/141 (79%) Strand = Plus / Plus Query: 100 atgtgggataacaaaactggacgctccagaggttatggctttgtctccttccgtaatcag 159 ||||||||| | |||||||| || || ||||| | ||| ||||| ||||||||||| || Sbjct: 631 atgtgggatcagaaaactgggcgttcaagaggatttggatttgtttccttccgtaaccaa 690 Query: 160 caggaagctgaaactgctataactgaaatgactggtaaatggcttggcagcagacaaata 219 ||||| || | ||||| ||| ||| || ||||| ||||||||||| ||| || ||| Sbjct: 691 caggatgcccagactgcaatagatgagataactgggaaatggcttggttccaggcagata 750 Query: 220 aggtgcaactgggcaacaaag 240 | ||||||||||| |||||| Sbjct: 751 cgttgcaactgggcgacaaag 771
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 87 tgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctc 146 |||||| || || ||||||||| | || |||||| | || ||||||||||||||||| || Sbjct: 123914 tgatgcccgagttatgtgggatcaaaagactggaagatctagaggttatggctttgtttc 123973 Query: 147 cttccgtaatcagcagg 163 |||| | ||||| |||| Sbjct: 123974 cttcaggaatcaacagg 123990
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 87 tgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtctc 146 |||||| || || ||||||||| | || |||||| | || ||||||||||||||||| || Sbjct: 333 tgatgcccgagttatgtgggatcaaaagactggaagatctagaggttatggctttgtttc 392 Query: 147 cttccgtaatcagcagg 163 |||| | ||||| |||| Sbjct: 393 cttcaggaatcaacagg 409
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence Length = 105599 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 487 aaagggtttggatttataaggtacagtacccatggtgaagcagc 530 ||||| ||||| ||| | || ||||||||||||||||||||||| Sbjct: 31778 aaaggttttgggtttgtgagatacagtacccatggtgaagcagc 31821
>emb|BX908762.11| Zebrafish DNA sequence from clone CH211-222N22 in linkage group 3, complete sequence Length = 113490 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 tccagtaatgcagcaatggagg 325 |||||||||||||||||||||| Sbjct: 45485 tccagtaatgcagcaatggagg 45506
>emb|AL670244.10| Mouse DNA sequence from clone RP23-291I11 on chromosome 11, complete sequence Length = 40305 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 atttgagttctgaagtgaatga 44 |||||||||||||||||||||| Sbjct: 23920 atttgagttctgaagtgaatga 23941
>ref|NM_205396.1| Gallus gallus inhibin, beta A (activin A, activin AB alpha polypeptide) (INHBA), mRNA Length = 1683 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 gaggatttttgttggtgatttg 27 |||||||||||||||||||||| Sbjct: 258 gaggatttttgttggtgatttg 279
>emb|BX649547.7| Zebrafish DNA sequence from clone DKEY-19E10 in linkage group 3, complete sequence Length = 237569 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 tccagtaatgcagcaatggagg 325 |||||||||||||||||||||| Sbjct: 79691 tccagtaatgcagcaatggagg 79712
>gb|AF336338.1|AF336338 Meleagris gallopavo inhibin-betaA mRNA, complete cds Length = 1478 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 gaggatttttgttggtgatttg 27 |||||||||||||||||||||| Sbjct: 202 gaggatttttgttggtgatttg 223
>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete sequence Length = 90459 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 251 aagagaaacaagaaacagacaa 272 |||||||||||||||||||||| Sbjct: 59107 aagagaaacaagaaacagacaa 59086
>gb|U42377.1|GGU42377 Gallus gallus inhibin/activin beta A-subunit mRNA, complete cds Length = 1540 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 gaggatttttgttggtgatttg 27 |||||||||||||||||||||| Sbjct: 200 gaggatttttgttggtgatttg 221
>gb|U26946.1|GGU26946 Gallus gallus inhibin beta A subunit mRNA, complete cds Length = 1683 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 gaggatttttgttggtgatttg 27 |||||||||||||||||||||| Sbjct: 258 gaggatttttgttggtgatttg 279
>ref|XM_711516.1| Candida albicans SC5314 hypothetical protein (CaO19_7368), mRNA Length = 1533 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 10 atttttgttggtgatttgagttctgaagtgaatgatg 46 ||||||||||| || |||||| ||||||| ||||||| Sbjct: 523 atttttgttggagacttgagtcctgaagtaaatgatg 559
>gb|BT013167.1| Lycopersicon esculentum clone 134230R, mRNA sequence Length = 1654 Score = 42.1 bits (21), Expect = 1.9 Identities = 117/149 (78%) Strand = Plus / Plus Query: 85 tctgatgctcgggtcatgtgggataacaaaactggacgctccagaggttatggctttgtc 144 |||||||| |||| ||||||||| | || ||||| || || ||||||| ||| ||||| Sbjct: 673 tctgatgcaagggtaatgtgggatcaaaagactgggcgttctagaggttttggttttgtt 732 Query: 145 tccttccgtaatcagcaggaagctgaaactgctataactgaaatgactggtaaatggctt 204 || |||||||| || ||||| ||| ||| ||| || | ||| | || || ||||||||| Sbjct: 733 tctttccgtaaccaacaggatgctcaaagtgccatcaatgatttaacaggcaaatggctt 792 Query: 205 ggcagcagacaaataaggtgcaactgggc 233 || || || || ||| | ||||||||||| Sbjct: 793 ggtagtaggcagatacgttgcaactgggc 821
>emb|AL161910.19| Human DNA sequence from clone RP11-260L6 on chromosome 9 Contains the GADD45G gene for growth arrest and DNA-damage-inducible, gamma (CR6, DDIT2, GRP17) and a CpG island, complete sequence Length = 171025 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 aaacaagaaacagacaatcat 276 ||||||||||||||||||||| Sbjct: 120358 aaacaagaaacagacaatcat 120378
>emb|AL162456.14| Human DNA sequence from clone RP11-95C14 on chromosome 13 Contains part of the GPC5 gene for glypican 5, complete sequence Length = 165100 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 agaagagaaacaagaaacaga 269 ||||||||||||||||||||| Sbjct: 27593 agaagagaaacaagaaacaga 27573
>emb|BX815461.1|CNS0ACRK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZC06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1573 Score = 42.1 bits (21), Expect = 1.9 Identities = 54/65 (83%) Strand = Plus / Plus Query: 100 atgtgggataacaaaactggacgctccagaggttatggctttgtctccttccgtaatcag 159 ||||||||| | |||||||| || || ||||| | ||| ||||| ||||||||||| || Sbjct: 594 atgtgggatcagaaaactgggcgttcaagaggatttggatttgtttccttccgtaaccaa 653 Query: 160 cagga 164 ||||| Sbjct: 654 cagga 658
>emb|CR628394.17| Zebrafish DNA sequence from clone DKEY-204A24 in linkage group 19, complete sequence Length = 242800 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 473 gtgttcaacaggaaaaagggtttgg 497 ||||||||||||||||| ||||||| Sbjct: 39549 gtgttcaacaggaaaaaaggtttgg 39525
>ref|NM_103912.2| Arabidopsis thaliana signal transducer AT1G50280 mRNA, complete cds Length = 1840 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 agaagagaaacaagaaacagacaatcat 276 ||||||||||||||||| ||| |||||| Sbjct: 222 agaagagaaacaagaaaaagagaatcat 249
>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete sequence Length = 100975 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 agaagagaaacaagaaacagacaatcat 276 ||||||||||||||||| ||| |||||| Sbjct: 50766 agaagagaaacaagaaaaagagaatcat 50793
>gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosome 16, complete sequence Length = 192846 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 atcagcaggaagctgaaact 174 |||||||||||||||||||| Sbjct: 140197 atcagcaggaagctgaaact 140178
>emb|CR405715.16| Zebrafish DNA sequence from clone DKEY-47K20 in linkage group 18, complete sequence Length = 170849 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgcaactgggcaacaaagac 242 |||||||||||||||||||| Sbjct: 19181 tgcaactgggcaacaaagac 19200
>gb|AC087342.6| Homo sapiens chromosome 8, clone RP11-540E4, complete sequence Length = 151023 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtctccttccgtaatcagc 160 |||||||||||||||||||| Sbjct: 24380 tgtctccttccgtaatcagc 24399
>emb|AL109936.11|HSJ1057J7 Human DNA sequence from clone RP5-1057J7 on chromosome 1 Contains a ribosomal protein L29 (RPL29) pseudogene, the HNRPR gene for heterogeneous nuclear ribonucleoprotein R, the ZNF436 gene for zinc finger protein 436 (KIAA1710, FLJ35045), a novel gene (LOC148898), the 3' end of the TCEA3 gene for transcription elongation factor A (SII) 3 and a CpG island, complete sequence Length = 150285 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 tgttcaacaggaaaaagggt 493 |||||||||||||||||||| Sbjct: 78507 tgttcaacaggaaaaagggt 78526
>emb|BX901898.15| Zebrafish DNA sequence from clone DKEY-148E3 in linkage group 1, complete sequence Length = 249378 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 ttcgtgttcaacaggaaaaa 489 |||||||||||||||||||| Sbjct: 114446 ttcgtgttcaacaggaaaaa 114427
>gb|AY080713.1| Arabidopsis thaliana unknown protein (At1g50280) mRNA, complete cds Length = 1857 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 agaagagaaacaagaaacagacaatcat 276 ||||||||||||||||| ||| |||||| Sbjct: 222 agaagagaaacaagaaaaagagaatcat 249
>emb|BX323077.15| Zebrafish DNA sequence from clone DKEYP-110E4 in linkage group 14, complete sequence Length = 195732 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aagaaaatccagagaacaac 366 |||||||||||||||||||| Sbjct: 52095 aagaaaatccagagaacaac 52114
>dbj|AK133108.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930578B19 product:unclassifiable, full insert sequence Length = 3863 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atttgagttctgaagtgaat 42 |||||||||||||||||||| Sbjct: 3410 atttgagttctgaagtgaat 3391
>gb|AC068020.7| Homo sapiens chromosome 8, clone RP11-556O5, complete sequence Length = 203411 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgtctccttccgtaatcagc 160 |||||||||||||||||||| Sbjct: 146551 tgtctccttccgtaatcagc 146532
>emb|BX537331.2| Mouse DNA sequence from clone RP23-338B23 on chromosome 2, complete sequence Length = 171790 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atttgagttctgaagtgaat 42 |||||||||||||||||||| Sbjct: 129013 atttgagttctgaagtgaat 128994
>dbj|AK029283.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4832413J09 product:GPI-anchored membrane protein 1, full insert sequence Length = 3381 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 atttgagttctgaagtgaat 42 |||||||||||||||||||| Sbjct: 2337 atttgagttctgaagtgaat 2356
>gb|AC155318.2| Ornithorhynchus anatinus chromosome UNK clone OABb-158A1, complete sequence Length = 163918 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 cagagaacaaccctgatttc 375 |||||||||||||||||||| Sbjct: 240 cagagaacaaccctgatttc 221
>dbj|AK031050.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5832442B03 product:GPI-anchored membrane protein 1, full insert sequence Length = 4143 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 atttgagttctgaagtgaat 42 |||||||||||||||||||| Sbjct: 2338 atttgagttctgaagtgaat 2357
>emb|AL111201.1|CNS01955 Botrytis cinerea strain T4 cDNA library Length = 480 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gaggcaaaccaggatacagg 341 |||||||||||||||||||| Sbjct: 256 gaggcaaaccaggatacagg 275
>gb|BC095296.1| Danio rerio transforming growth factor, beta-induced, mRNA (cDNA clone MGC:110495 IMAGE:7174517), complete cds Length = 3093 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aagaaaatccagagaacaac 366 |||||||||||||||||||| Sbjct: 2173 aagaaaatccagagaacaac 2192
>gb|AC074091.6| Homo sapiens BAC clone RP11-158I13 from 2, complete sequence Length = 204153 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aactctttatgcctgtttct 67 |||||||||||||||||||| Sbjct: 13354 aactctttatgcctgtttct 13373
>gb|AC023423.5|AC023423 Homo sapiens BAC clone RP11-430C23 from Y, complete sequence Length = 88016 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 gaagcaaagaaaatccagagaaca 364 ||||||||||||| |||||||||| Sbjct: 57479 gaagcaaagaaaagccagagaaca 57502
>gb|BT003005.1| Arabidopsis thaliana clone U18076 unknown protein (At1g50280) mRNA, complete cds Length = 1609 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 agaagagaaacaagaaacagacaatcat 276 ||||||||||||||||| ||| |||||| Sbjct: 119 agaagagaaacaagaaaaagagaatcat 146
>gb|AC007843.6|AC007843 Arabidopsis thaliana chromosome I BAC F28G4 genomic sequence, complete sequence Length = 84974 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 100 atgtgggataacaaaactggacgctccagaggttatggctttgtctccttccgtaa 155 ||||||||| | |||||||| || || ||||| | ||| ||||| ||||||||||| Sbjct: 62518 atgtgggatcagaaaactgggcgttcaagaggatttggatttgtttccttccgtaa 62573
>gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana BAC F1L3 from chromosome I, complete sequence Length = 127968 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 100 atgtgggataacaaaactggacgctccagaggttatggctttgtctccttccgtaa 155 ||||||||| | |||||||| || || ||||| | ||| ||||| ||||||||||| Sbjct: 6839 atgtgggatcagaaaactgggcgttcaagaggatttggatttgtttccttccgtaa 6784
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 catatccttcttgttctgat 90 |||||||||||||||||||| Sbjct: 3947707 catatccttcttgttctgat 3947726
>gb|AY104773.1| Zea mays PCO148380 mRNA sequence Length = 1586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgaggatttttgttggtgat 24 |||||||||||||||||||| Sbjct: 966 cgaggatttttgttggtgat 985
>dbj|AB086407.1| Danio rerio BIGH3 mRNA for beta ig-h3, complete cds Length = 3046 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aagaaaatccagagaacaac 366 |||||||||||||||||||| Sbjct: 2166 aagaaaatccagagaacaac 2185
>ref|NM_182862.1| Danio rerio transforming growth factor, beta-induced (tgfbi), mRNA Length = 3046 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 aagaaaatccagagaacaac 366 |||||||||||||||||||| Sbjct: 2166 aagaaaatccagagaacaac 2185
>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence Length = 231400 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gcaaagaaaatccagagaac 363 |||||||||||||||||||| Sbjct: 59997 gcaaagaaaatccagagaac 59978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,520,706 Number of Sequences: 3902068 Number of extensions: 5520706 Number of successful extensions: 111379 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 111087 Number of HSP's gapped (non-prelim): 295 length of query: 546 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 523 effective length of database: 17,143,297,704 effective search space: 8965944699192 effective search space used: 8965944699192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)