ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22d02 |
|---|---|
| Clone Library Name | barley_pub |
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 68.2 bits (165), Expect = 2e-11 Identities = 35/73 (47%), Positives = 45/73 (61%) Frame = +3 Query: 18 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 N +RLF G+LGN+VND+ L +AFS +PS KVVRD R GKT+G+GFVSF + A Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86 Query: 198 XKRNEWKVCWESP 236 + K P Sbjct: 87 WREKNGKYIGSRP 99 Score = 32.7 bits (73), Expect = 0.87 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 10/61 (16%) Frame = +1 Query: 103 SIWQRLLEIRGLAKQKVMDSSV----------FQTLQTSLQQXKEMNGKYVGNRPIKLRK 252 S++Q E L K KV+ F+ L+ +E NGKY+G+RP+KL + Sbjct: 45 SLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSR 104 Query: 253 S 255 + Sbjct: 105 A 105
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 58.2 bits (139), Expect = 2e-08 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 + + N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGFVSF N Sbjct: 107 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166 Query: 183 D 185 D Sbjct: 167 D 167
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 58.2 bits (139), Expect = 2e-08 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 + + N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGFVSF N Sbjct: 90 KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 149 Query: 183 D 185 D Sbjct: 150 D 150
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 56.2 bits (134), Expect = 7e-08 Identities = 25/58 (43%), Positives = 38/58 (65%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 +++ + LF GDL V+D+ L AF FPS+ V+ D +TG ++GYGFVSF++ D Sbjct: 157 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 214
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 56.2 bits (134), Expect = 7e-08 Identities = 26/65 (40%), Positives = 41/65 (63%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 ++N + +F GDL ++ + + AF+ F + A+VV+D TGK+KGYGFVSF N D Sbjct: 102 SQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 192 AAXKR 206 A ++ Sbjct: 162 NAIQQ 166
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 55.5 bits (132), Expect = 1e-07 Identities = 26/65 (40%), Positives = 41/65 (63%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 +++ + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGFVSF N D Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 192 AAXKR 206 A ++ Sbjct: 162 NAIQQ 166
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 55.1 bits (131), Expect = 2e-07 Identities = 24/62 (38%), Positives = 39/62 (62%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 AE +YR F G L ND+ L +AFS+F +K++ D+ TG+++G+GFV+F + + Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61 Query: 192 AA 197 A Sbjct: 62 DA 63
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +3 Query: 18 NDYRLFCGDLGNEVND-DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 ++Y +F GDL VN+ DV S SR+ S AK++ D +T ++GYGFV F++ D + Sbjct: 184 SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKS 243 Query: 195 AXKRNEWKVCWESP 236 A + ++C + P Sbjct: 244 ALAEMQGQICGDRP 257 Score = 34.7 bits (78), Expect = 0.23 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Frame = +3 Query: 15 ENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 EN Y+ L+ G+L V + + + ++ K++R++ TG GY FV F++P + Sbjct: 87 ENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHE 146 Query: 186 LAAAXKRN 209 ++A N Sbjct: 147 ASSAMSMN 154
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 53.1 bits (126), Expect = 6e-07 Identities = 26/64 (40%), Positives = 39/64 (60%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF G+L + V +++L K F R+ SF AKV RD T K+ GYG+++F + D +A K Sbjct: 113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEF 172 Query: 210 EWKV 221 + V Sbjct: 173 NYTV 176
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/69 (34%), Positives = 41/69 (59%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 A+ +YR F G L N++ L +AF+ F +KV+ D+ TG+++G+GFV+FS+ + Sbjct: 4 ADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63 Query: 192 AAXKRNEWK 218 A + K Sbjct: 64 DAIENMNGK 72
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E EN ++F G L + DD++ + +S+F V+RD T +++G+GFV+FS T++ Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77 Query: 189 AAAXKR 206 AA K+ Sbjct: 78 DAAMKQ 83
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 49.7 bits (117), Expect = 7e-06 Identities = 21/53 (39%), Positives = 35/53 (66%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 +LF G L E N+D L +AF+++ + VV+D+ T +++G+GFV+F N D Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDD 58
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/55 (36%), Positives = 36/55 (65%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +E +YR F G L ND+ L + FS+F +K++ D+ +G+++G+GFV+F + Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Frame = +3 Query: 18 NDYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 N+ +F GDL V + L + F +R+ S + AK+V D+ TG +KGYGFV F+N Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 47.8 bits (112), Expect = 3e-05 Identities = 22/65 (33%), Positives = 37/65 (56%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 EA++ +LF G L E N+ +L F + + +++D RT K++G+ F++F NP D Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADA 61 Query: 189 AAAXK 203 A K Sbjct: 62 KNAAK 66
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.8 bits (112), Expect = 3e-05 Identities = 20/58 (34%), Positives = 36/58 (62%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 A ++ +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.8 bits (112), Expect = 3e-05 Identities = 20/58 (34%), Positives = 36/58 (62%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 A ++ +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.8 bits (112), Expect = 3e-05 Identities = 20/58 (34%), Positives = 36/58 (62%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 A ++ +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 47.8 bits (112), Expect = 3e-05 Identities = 22/69 (31%), Positives = 40/69 (57%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 A+ +YR F G L +++ L AF+ + +KV+ D+ TG+++G+GFV+FS+ + Sbjct: 4 ADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSML 63 Query: 192 AAXKRNEWK 218 A + K Sbjct: 64 DAIENMNGK 72
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/62 (33%), Positives = 36/62 (58%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 +E +YR F G L D L + FS+F +K++ D+ TG+++G+GFV+F + + Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61 Query: 192 AA 197 A Sbjct: 62 DA 63
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/58 (34%), Positives = 36/58 (62%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 A ++ +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/58 (34%), Positives = 36/58 (62%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 A ++ +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/89 (30%), Positives = 46/89 (51%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 R E L+ +L + VND+ L + FS + + KV+ + + G ++G+GFV++SNP Sbjct: 321 RFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPE 379 Query: 183 DLAAAXKRNEWKVCWESPY*IA*EQLEGE 269 + A K K+ P +A Q + E Sbjct: 380 EALLAMKEMNGKMIGRKPLYVALAQRKEE 408 Score = 37.4 bits (85), Expect = 0.035 Identities = 20/56 (35%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL VN+ L F++ + +V RD T ++ GY +V+F+NP D + A Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRA 101 Score = 33.5 bits (75), Expect = 0.51 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L +++ L + FS F + KV D G++KGYGFV F AA Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAA 188
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 46.6 bits (109), Expect = 6e-05 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +YR F G L +D L AFS++ +K++ D+ TG+++G+GFV+F + + A Sbjct: 7 EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDA 65
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/68 (32%), Positives = 40/68 (58%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 R+ D +LF G+L V+ L++ F + M +V+ DK TG+++G+GFV+ S Sbjct: 92 RNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAA 151 Query: 183 DLAAAXKR 206 ++ AA ++ Sbjct: 152 EVEAAAQQ 159 Score = 38.9 bits (89), Expect = 0.012 Identities = 19/57 (33%), Positives = 34/57 (59%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 RL+ G+L V+D L F+ A+V+ D+ +G++KG+GFV+ S+ ++ A Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/89 (31%), Positives = 47/89 (52%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 RHE+ L+ +L + ++DD L AFS + + AKV+ D+ G++KG+GFV F+ + Sbjct: 280 RHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAAS 338 Query: 183 DLAAAXKRNEWKVCWESPY*IA*EQLEGE 269 + A +V P +A Q + E Sbjct: 339 EATCAVTELNGRVVGSKPLYVALAQRKEE 367 Score = 37.4 bits (85), Expect = 0.035 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL +VN+ L FS +V RD T ++ GY +V+F P D A Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERA 59 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F +L +++ + FS F + KV D++ G +KGYGFV F Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHF 137 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 Query: 54 EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 + +D+ L + F + KV+ K GK+KG+GFV+F AA Sbjct: 193 DFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAA 239
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/62 (35%), Positives = 38/62 (61%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAX 200 D +LF G+L V+ L+ F R + M +V+ DK TG+++G+GFV+ S ++ AA Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAE 145 Query: 201 KR 206 ++ Sbjct: 146 QQ 147 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/58 (32%), Positives = 38/58 (65%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 ++ R++ G+L V+D L + FS + AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 45.8 bits (107), Expect = 1e-04 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +YR F G L ++ L AFS+F +K++ D+ TG+++G+GFV+F + + A Sbjct: 7 EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDA 65
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN--PTDLAAAX 200 +LF G L +V + L + FS+F + A+++ DK++GK +G+GFV F N D AA Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158 Query: 201 K 203 K Sbjct: 159 K 159 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +LF G L + ++ L F F + VV + +T +++ +GFV++SN + AA Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/80 (32%), Positives = 43/80 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L K FS F S AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVGSKPLYVALAQRKEE 373 Score = 42.7 bits (99), Expect = 8e-04 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +A+ ++ + G EV+D+ L + FS+F KV+RD GK+KG+GFVS+ D Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDA 244 Query: 189 AAAXKRNEWK 218 A + K Sbjct: 245 NKAVEEMNGK 254 Score = 37.0 bits (84), Expect = 0.046 Identities = 19/56 (33%), Positives = 30/56 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL ++V + +L + FS +V RD T ++ GY +V+F P D A Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/62 (33%), Positives = 40/62 (64%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAX 200 D +LF G+L V+ L++ F + M +V+ DK TG+++G+GFV+ S+ +++ AA Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149 Query: 201 KR 206 ++ Sbjct: 150 QQ 151 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/59 (32%), Positives = 35/59 (59%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 R++ G+L V+D L FS A+V+ D+ +G++KG+GFV++ + ++ A K Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/59 (33%), Positives = 37/59 (62%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 D ++F G+L + L++ F R + M +V+ DK TG+++G+GFV+ S+ ++ AA Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/58 (32%), Positives = 36/58 (62%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 ++ R++ G+L V+ D L FS AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEV 242
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/56 (41%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL V D L AF + + +V RD T ++ GYG+V+F+NP D A A Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/84 (30%), Positives = 44/84 (52%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L ++D+ L + FS F + +KV+RD G +KG GFV+F+ P + A + Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQL 378 Query: 210 EWKVCWESPY*IA*EQLEGEDRCR 281 K+ P +A Q + + R R Sbjct: 379 SGKMIESKPLYVAIAQRKEDRRVR 402 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ +L DD L AF + A V++D GK+KG+GFV+F N D A A Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARA 271 Score = 34.3 bits (77), Expect = 0.30 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 +F +L ++ L FS F + KV D +G++KGYGFV ++N A ++ Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEK 183
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 45.1 bits (105), Expect = 2e-04 Identities = 18/52 (34%), Positives = 33/52 (63%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +YR F G L +D L AF+++ +K++ D+ TG+++G+GFV+F + Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 E+ Y+++ G+L V +++L FS AKV R T K+ G+GFVSFS+ ++ A Sbjct: 181 ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEA 240 Query: 195 A 197 A Sbjct: 241 A 241 Score = 37.4 bits (85), Expect = 0.035 Identities = 17/66 (25%), Positives = 35/66 (53%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 + E RL+ G++ +N+D L + +A+V+ DK +G+++ +GFV+ D Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDA 138 Query: 189 AAAXKR 206 A ++ Sbjct: 139 NAVIEK 144
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/80 (32%), Positives = 44/80 (55%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L KAFS F + AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVATKPLYVALAQRKEE 373 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ + G +++D+ L F +F KV+ D+ +GK+KG+GFVSF D A Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/91 (30%), Positives = 48/91 (52%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 R E L+ +L + V+D+ L + FS + + +KV+ + + G ++G+GFV++SNP Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383 Query: 183 DLAAAXKRNEWKVCWESPY*IA*EQLEGEDR 275 + A K+ P IA Q + EDR Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQRK-EDR 413 Score = 36.2 bits (82), Expect = 0.078 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L +++ L + FS F + KV D TG++KGYGFV F AA Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAA 192 Score = 35.0 bits (79), Expect = 0.17 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V + L F + +V RD+ ++ GY +++FSNP D A + Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109 Query: 210 EWKVCWESP 236 + ++ P Sbjct: 110 NYTPLFDRP 118
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/59 (33%), Positives = 37/59 (62%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 D ++F G+L + L++ F R + M +V+ DK TG+++G+GFV+ S+ ++ AA Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/58 (32%), Positives = 36/58 (62%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 ++ R++ G+L V+ D L FS AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEV 248
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/59 (32%), Positives = 34/59 (57%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 +LF G L ++ L FS F + VV+D+ T +++G+GF++F+NP + A + Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF +L + V+D+ L + F+ + + AKV+R + GK+KG+GFV FS P + A Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEK 381 Query: 210 EWKVCWESPY*IA 248 ++ P +A Sbjct: 382 NQQIVAGKPLYVA 394 Score = 32.7 bits (73), Expect = 0.87 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ ++ +E D+ + F++F A + +D GK KG+GFV++ D A Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKA 274 Score = 31.6 bits (70), Expect = 1.9 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F +L ++++ L FS F +K+ D+ GK+KG+GFV F Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHF 172 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 L+ GDL V++ L FS S + +V RD T + GY +V+F++ Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 87
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 44.3 bits (103), Expect = 3e-04 Identities = 20/60 (33%), Positives = 37/60 (61%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E + +LF G L E + LS+ F RF V+++ +G+++G+GFV+F++PT++ Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 24 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 Y++F G L + V + L F+R+ ++ D+ K++G+GF+SF + + Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV 150
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/62 (33%), Positives = 36/62 (58%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 A + + +F +LG + ++ +L + F F + KV+RD T K KG+GFV+ +N + A Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAA 299 Query: 192 AA 197 A Sbjct: 300 MA 301 Score = 35.4 bits (80), Expect = 0.13 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + D L FS AK++RDK G + GYGFV++ D A Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 44.3 bits (103), Expect = 3e-04 Identities = 19/61 (31%), Positives = 38/61 (62%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 E YR++ G++ ++D L + FS A+VV D+ TG+++G+GFV+ ++ +++ Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 286 Query: 195 A 197 A Sbjct: 287 A 287
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Frame = +3 Query: 9 EAENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 E N Y+ LF +L +EV+D+ L FS F + AK++ D++ GK+KG+GFV ++ P Sbjct: 356 EKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTP 414 Query: 180 TD 185 + Sbjct: 415 EE 416 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 L+ G+L V + +L + F+ +V RD T ++ GY +V+F N D Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMED 133 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L +++ L FS F KV D+ G KGYGFV F + AA Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAA 224
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/59 (32%), Positives = 34/59 (57%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 +LF G L ++ L FS F + VV+D+ T +++G+GF++F+NP + A + Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/62 (33%), Positives = 36/62 (58%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 A + + +F +LG + ++ +L + F F + KV+RD T K KG+GFV+ +N + A Sbjct: 240 ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESA 299 Query: 192 AA 197 A Sbjct: 300 MA 301 Score = 33.9 bits (76), Expect = 0.39 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + L FS AK++RDK G + GYGFV++ D A Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF GDL V ++ L F ++PSF AKV D T K+ G+G+++F + + A Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKA 148
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 +LF G L +D L AF+ F AKV+ D+ TG+++G+GFV+F++ AA Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 207 NEWK 218 + K Sbjct: 96 MDGK 99
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G L V+D L + F + + A+V+ D ++G++KGYG+V F P AA N Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 210 EWK 218 K Sbjct: 325 GTK 327 Score = 35.8 bits (81), Expect(2) = 0.013 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +F G+L +D LS AF ++ D ++G+ KG+G+V+FS+ Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD 416 Score = 21.9 bits (45), Expect(2) = 0.013 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +1 Query: 187 SLQQXKEMNGKYVGNRPIKL 246 S ++ EMNG ++ RP +L Sbjct: 419 SAKKCVEMNGHFIAGRPCRL 438
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 43.5 bits (101), Expect = 5e-04 Identities = 17/59 (28%), Positives = 35/59 (59%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 ++F G L + +D L + F ++ + K+++D TG+++G+GF+SF P+ + K Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK 218 Score = 39.7 bits (91), Expect = 0.007 Identities = 17/58 (29%), Positives = 36/58 (62%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 R E + ++F G +G +V + FS++ + A+++ DK TG+++G+GFV++ + Sbjct: 236 RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 293
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E DD L + F ++ + V+RD +T +++G+GFV++S ++ Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 90 DAAMCARPHKV 100
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E DD L + F ++ + V+RD +T +++G+GFV++S ++ Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 90 DAAMCARPHKV 100
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 R+F G + + N++ L K FS++ S K+V D R G +KGYGF++F D Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFITFETQED 85
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/61 (37%), Positives = 35/61 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L ++F S A++V D+ TG +KG+GFV FS+P D AA + Sbjct: 555 LFVRGLSEDTTEETLRESFEGSIS---ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 210 E 212 E Sbjct: 612 E 612
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E DD L + F ++ + V+RD +T +++G+GFV++S ++ Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 90 DAAMCARPHKV 100
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/53 (41%), Positives = 31/53 (58%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 R+F G + + N+ L K FS++ S K+V D R G +KGYGFV+F D Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQED 85
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/53 (41%), Positives = 31/53 (58%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 R+F G + + N+ L K FS++ S K+V D R G +KGYGFV+F D Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQED 85
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 43.1 bits (100), Expect = 6e-04 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 RL+ G L + +D+L F F +++ D TG++KGYGF++FS+ Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 43.1 bits (100), Expect = 6e-04 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 RL+ G L + +D+L F F +++ D TG++KGYGF++FS+ Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 38.9 bits (89), Expect(2) = 8e-04 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVVRDKRTGKTKGYGFVSFSN 176 +F G+L E+++ +L FS F K++RD TG +KGY F++F++ Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151 Score = 34.7 bits (78), Expect = 0.23 Identities = 19/65 (29%), Positives = 33/65 (50%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E D ++ G L +V++ +L + F + + +D+ TG+ +GYGFV F + D Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67 Query: 189 AAAXK 203 A K Sbjct: 68 DYAIK 72 Score = 23.1 bits (48), Expect(2) = 8e-04 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 169 FQTLQTSLQQXKEMNGKYVGNRPI 240 F + S + MNG+Y+ NRPI Sbjct: 149 FASFDASDAAIEAMNGQYLCNRPI 172
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L K F+ F S AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVATKPLYVALAQRKEE 373 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Score = 34.3 bits (77), Expect = 0.30 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ + G +++D+ L + F ++ + KV+ D GK++G+GFVSF D A Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKA 247
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 42.7 bits (99), Expect = 8e-04 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 RL+ G L + +D+L F F + +++D TG++KGYGF++FS+ Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 313
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 42.7 bits (99), Expect = 8e-04 Identities = 23/71 (32%), Positives = 38/71 (53%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E DD L + F ++ V+RD +T +++G+GFV++S ++ Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81 Query: 189 AAAXKRNEWKV 221 A+ KV Sbjct: 82 DASMSARPHKV 92
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVATKPLYVALAQRKEE 373 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ + G +++D+ L + F +F KV+ D+ +GK+KG+GFVSF D A Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVATKPLYVALAQRKEE 373 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ + G +++D+ L + F +F KV+ D+ +GK+KG+GFVSF D A Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVATKPLYVALAQRKEE 373 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ + G +++D+ L F +F KV+ D+ +GK+KG+GFVSF D A Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/80 (31%), Positives = 43/80 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVATKPLYVALAQRKEE 373 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ + G +++D+ L F +F KV+ D+ +GK+KG+GFVSF D A Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/60 (36%), Positives = 32/60 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G+L +V + + K F S ++VRDK TG KG+G+V F N + A K N Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 42.7 bits (99), Expect = 8e-04 Identities = 23/71 (32%), Positives = 38/71 (53%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E DD L + F ++ V+RD +T +++G+GFV++S ++ Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81 Query: 189 AAAXKRNEWKV 221 A+ KV Sbjct: 82 DASMSARPHKV 92
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/61 (29%), Positives = 38/61 (62%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 ++ ++L+ +L + L AF+ P F AKV+ D+ +G+++G+GF++FS+ + + Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNS 273 Query: 195 A 197 A Sbjct: 274 A 274
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Frame = +3 Query: 3 RHEAENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 + E N Y+ L+ +L + ++DD L K FS + + AKV+ + G +KG+GFV FS Sbjct: 284 KQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFS 341 Query: 174 NPTDLAAAXKRNEWKVCWESPY*IA*EQLEGE 269 +P + A ++ P +A Q + E Sbjct: 342 SPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 Score = 36.6 bits (83), Expect = 0.060 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V + +L + FS +V RD T ++ GY +++F P D A Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 210 EWKV 221 ++V Sbjct: 73 NFEV 76 Score = 35.0 bits (79), Expect = 0.17 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = +3 Query: 3 RHEAENDY--------RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG 158 R E E +Y ++ + G +++D L + FS F + KV+ D TG+++G+G Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFG 234 Query: 159 FVSFSN 176 FV++ N Sbjct: 235 FVNYGN 240
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L + ++ VL + F F + N KV+RD T K KG+GFV+ +N + A A Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 347 Score = 36.2 bits (82), Expect = 0.078 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + F K+VRDK TG++ GYGFV++ +P D A Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +3 Query: 24 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 Y +F +L E + L + F F + K+V+D T + KGYGFVS +N + A A + Sbjct: 402 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 461
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L + ++ VL + F F + N KV+RD T K KG+GFV+ +N + A A Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 354 Score = 36.2 bits (82), Expect = 0.078 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + F K+VRDK TG++ GYGFV++ +P D A Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L + ++ VL + F F + N KV+RD T K KG+GFV+ +N + A A Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 359 Score = 36.2 bits (82), Expect = 0.078 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + F K+VRDK TG++ GYGFV++ +P D A Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +3 Query: 24 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 Y +F +L E + L + F F + K+V+D T + KGYGFVS +N + A A + Sbjct: 438 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 497
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/59 (38%), Positives = 33/59 (55%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 ++F G L D L K F F A V+ D++TGK++GYGFV+ + D AAA + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA---DRAAADR 88
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/66 (27%), Positives = 39/66 (59%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E + +LF G+L +VN L+ F + + +A+V+ ++ T +++G+GFV+ S+ + Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204 Query: 189 AAAXKR 206 A ++ Sbjct: 205 ETAVEK 210 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 E +R++ G+L +V++ L + FS A+VV D+ TG+++G+GFV+ S+ +L Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300 Query: 195 A 197 A Sbjct: 301 A 301
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/59 (38%), Positives = 33/59 (55%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 ++F G L D L K F F A V+ D++TGK++GYGFV+ + D AAA + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA---DRAAAER 67
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/54 (33%), Positives = 32/54 (59%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 ++F G L + + D L FS+F V+RD T +++G+GFV+F++P + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 75 Score = 33.5 bits (75), Expect = 0.51 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 27 RLFCGDLG-NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 ++F G L N V +DV + F +F A ++ DK T + +G+GFV+F N Sbjct: 111 KIFVGGLSANTVVEDV-KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN 160
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 8 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 68 DAAMNARPHKV 78
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 +F G L ++++ L K F +F ++V+DK T K+KGY F+ F +P A K Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFK 166
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 8 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 68 DAAMNARPHKV 78
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/54 (33%), Positives = 32/54 (59%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 ++F G L + + D L FS+F V+RD T +++G+GFV+F++P + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 75 Score = 33.5 bits (75), Expect = 0.51 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 27 RLFCGDLG-NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 ++F G L N V +DV + F +F A ++ DK T + +G+GFV+F N Sbjct: 111 KIFVGGLSANTVVEDV-KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN 160
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/62 (32%), Positives = 38/62 (61%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 R + E R++ G+L +V+ L + FS A+VV D+ TG+++G+GFV+ S+ + Sbjct: 142 RGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSES 201 Query: 183 DL 188 ++ Sbjct: 202 EV 203
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 8 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 68 DAAMNARPHKV 78
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 8 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 67 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 68 DAAMNARPHKV 78
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/53 (37%), Positives = 32/53 (60%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F+R+ S K++ D RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDV 93
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L E ++ VL + F F + KV+RD T K KG+GFV+ +N + A A Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 L + D F K+VRDK TG++ GYGFV++S+P D Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L E ++ VL + F F + KV+RD T K KG+GFV+ +N + A A Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 L + D F K+VRDK TG++ GYGFV++S+P D Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF--SNPTDL 188 ++ ++LF G L N +NDD + + + F +V+D TG +KGY F + N TD Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315 Query: 189 AAA 197 A A Sbjct: 316 AIA 318
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF--SNPTDL 188 ++ ++LF G L N +NDD + + + F +V+D TG +KGY F + N TD Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 315 Query: 189 AAA 197 A A Sbjct: 316 AIA 318
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 E+ D L+ +L + DD L K F ++ + ++RDK TGK +G FV F+ Sbjct: 166 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFN 220 Score = 33.1 bits (74), Expect = 0.66 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = +3 Query: 18 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 N L L ++ D L F N ++++D +TG + GY FV F++ D A Sbjct: 83 NGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNA 142 Query: 198 XK 203 K Sbjct: 143 IK 144
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/53 (37%), Positives = 32/53 (60%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F+R+ S K++ D RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDV 93
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/53 (37%), Positives = 32/53 (60%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F+R+ S K++ D RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDV 93
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +L+ G L ++ L AFS F A+V+ +K TG+++GYGFV+F Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/56 (39%), Positives = 28/56 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF L D+ L FSRF + +V+RDKRTG + Y F+ F N D A Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQA 305
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Frame = +3 Query: 3 RHEAENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 + E N Y+ L+ +L + ++DD L K FS + + KV+ + G +KG+GFV FS Sbjct: 284 KQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFS 341 Query: 174 NPTDLAAAXKRNEWKVCWESPY*IA*EQLEGE 269 +P + A ++ P +A Q + E Sbjct: 342 SPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 Score = 36.6 bits (83), Expect = 0.060 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V + +L + FS +V RD T ++ GY +++F P D A Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 210 EWKV 221 ++V Sbjct: 73 NFEV 76
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F R+ S K++ + RTG +KGYGFVSF N D+ Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDV 258 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F R+ S K++ + RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDV 93
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ + Sbjct: 8 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKV 67 Query: 189 AAAXKRNEWKV 221 AA KV Sbjct: 68 DAAMNARPHKV 78
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F R+ S K++ + RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDV 93
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F R+ S K++ + RTG +KGYGFVSF N D+ Sbjct: 372 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDV 423 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F R+ S K++ + RTG +KGYGFVSF N D+ Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDV 258 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F R+ S K++ + RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDV 93
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/56 (39%), Positives = 27/56 (48%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF L D+ L FSRF +V+RDKRTG + Y F+ F N D A Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQA 305
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F R+ S K++ + RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITN-RTGVSKGYGFVSFVNDVDV 93
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/53 (37%), Positives = 32/53 (60%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +++ + F+R+ S K++ D RTG +KGYGFVSF N D+ Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDV 93
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/61 (39%), Positives = 34/61 (55%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L +AF S N A++V D+ TG +KG+GFV FS D AA + Sbjct: 504 LFVRGLSEDTTEETLKEAFDG--SVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 210 E 212 E Sbjct: 561 E 561
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Score = 38.1 bits (87), Expect = 0.021 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + L F K+VRDK TG++ GYGFV++ +P D A Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Score = 38.1 bits (87), Expect = 0.021 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + L F K+VRDK TG++ GYGFV++ +P D A Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A A Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333 Score = 38.1 bits (87), Expect = 0.021 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + L F K+VRDK TG++ GYGFV++ +P D A Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/80 (30%), Positives = 42/80 (52%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ +L + ++D+ L K F F + AKV+ + G++KG+GFV FS+P + A Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 210 EWKVCWESPY*IA*EQLEGE 269 ++ P +A Q + E Sbjct: 354 NGRIVATKPLYVALAQRKEE 373 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ + G+++ND+ L + F ++ KV+ D GK+KG+GFVSF D A Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKA 247 Score = 37.0 bits (84), Expect = 0.046 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A A Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 334 Score = 38.1 bits (87), Expect = 0.021 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L + + L F K+VRDK TG++ GYGFV++ +P D A Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 E+ D L+ +L + DD L K F ++ + ++RDK TG+ +G FV F+ Sbjct: 183 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFN 237 Score = 34.7 bits (78), Expect = 0.23 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +A N L L ++ D L F N ++++D +TG + GY FV F++ D Sbjct: 97 QAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDA 156 Query: 189 AAAXK 203 A K Sbjct: 157 QNAIK 161
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/72 (29%), Positives = 39/72 (54%) Frame = +3 Query: 6 HEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 +E E +LF G L E D+ L + F ++ + V+RD + +++G+GFV++ + + Sbjct: 8 NEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67 Query: 186 LAAAXKRNEWKV 221 + AA KV Sbjct: 68 VDAAMTARPHKV 79
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/70 (28%), Positives = 35/70 (50%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +F G L ++D+ L K F A+V+ ++ T +++GYG+V F N + Sbjct: 163 ETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222 Query: 189 AAAXKRNEWK 218 A + + K Sbjct: 223 EKAIQEMQGK 232 Score = 32.7 bits (73), Expect = 0.87 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF G+L + D + + F++ ++ T + KG+G+V FSN D A Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 210 EWKVCWESPY*IA*EQLEGEDRCRGS 287 + + P+ + Q +DR R S Sbjct: 80 NFDLINGKPFRLMWSQ--PDDRLRKS 103 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246 Score = 36.6 bits (83), Expect = 0.060 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 210 EWKVCWESP 236 ++ P Sbjct: 362 NGRIVGSKP 370
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 210 EWKVCWESPY*IA*EQLEGEDRCRGS 287 + + P+ + Q +DR R S Sbjct: 80 NFDLINGKPFRLMWSQ--PDDRLRKS 103 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246 Score = 36.6 bits (83), Expect = 0.060 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 210 EWKVCWESP 236 ++ P Sbjct: 362 NGRIVGSKP 370
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 210 EWKVCWESPY*IA*EQLEGEDRCRGS 287 + + P+ + Q +DR R S Sbjct: 80 NFDLINGKPFRLMWSQ--PDDRLRKS 103 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246 Score = 37.0 bits (84), Expect = 0.046 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 210 EWKVCWESP 236 +V P Sbjct: 362 NGRVVGSKP 370
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 210 EWKVCWESPY*IA*EQLEGEDRCRGS 287 + + P+ + Q +DR R S Sbjct: 80 NFDLINGKPFRLMWSQ--PDDRLRKS 103 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246 Score = 36.6 bits (83), Expect = 0.060 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 210 EWKVCWESP 236 ++ P Sbjct: 362 NGRIVGSKP 370
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 210 EWKVCWESPY*IA*EQLEGEDRCRGS 287 + + P+ + Q +DR R S Sbjct: 80 NFDLINGKPFRLMWSQ--PDDRLRKS 103 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246 Score = 36.6 bits (83), Expect = 0.060 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 210 EWKVCWESP 236 ++ P Sbjct: 362 NGRIVGSKP 370
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 210 EWKVCWESPY*IA*EQLEGEDRCRGS 287 + + P+ + Q +DR R S Sbjct: 80 NFDLINGKPFRLMWSQ--PDDRLRKS 103 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246 Score = 36.6 bits (83), Expect = 0.060 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 210 EWKVCWESP 236 ++ P Sbjct: 362 NGRIVGSKP 370
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/58 (32%), Positives = 38/58 (65%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 ++ R++ G+L V+D L + FS + AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/63 (38%), Positives = 30/63 (47%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E LF L E D L + F F + AKV DK+T +K +GFVS+ NP Sbjct: 396 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 455 Query: 189 AAA 197 AA Sbjct: 456 QAA 458
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/63 (38%), Positives = 30/63 (47%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E LF L E D L + F F + AKV DK+T +K +GFVS+ NP Sbjct: 396 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 455 Query: 189 AAA 197 AA Sbjct: 456 QAA 458
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Frame = +3 Query: 3 RHEAENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 + E N Y+ L+ +L + ++DD L K F + + AKV+ + G +KG+GFV FS Sbjct: 284 KQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFS 341 Query: 174 NPTDLAAAXKRNEWKVCWESPY*IA*EQLEGE 269 +P + A ++ P +A Q + E Sbjct: 342 SPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ +F GDL D L F S +PS AK++ D TG ++ YGFV FS+ + A Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240 Query: 198 XKRNEWKVCWESP 236 + +C P Sbjct: 241 LMHMQGYLCQGRP 253
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/65 (29%), Positives = 36/65 (55%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 + E E +LF G L E ++ L + ++ V+RD + +++G+GFV+FS+ Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73 Query: 183 DLAAA 197 ++ AA Sbjct: 74 EVDAA 78 Score = 36.6 bits (83), Expect = 0.060 Identities = 13/50 (26%), Positives = 29/50 (58%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +LF G + + + L F + + +++ D+++GK +G+GFV+F + Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + Sbjct: 575 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Query: 210 E 212 E Sbjct: 632 E 632
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + Sbjct: 576 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 210 E 212 E Sbjct: 633 E 633 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/71 (30%), Positives = 31/71 (43%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E + LF G+L + L A S + N V D RTG + +G+V F + DL Sbjct: 305 EPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGTNRKFGYVDFESAEDL 363 Query: 189 AAAXKRNEWKV 221 A + KV Sbjct: 364 EKALELTGLKV 374
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + Sbjct: 573 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 210 E 212 E Sbjct: 630 E 630
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + Sbjct: 570 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626 Query: 210 E 212 E Sbjct: 627 E 627 Score = 32.7 bits (73), Expect = 0.87 Identities = 23/71 (32%), Positives = 33/71 (46%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E + LF G+L + + L A S + N VV D RTG + +G+V F + DL Sbjct: 303 EPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDL 361 Query: 189 AAAXKRNEWKV 221 A + KV Sbjct: 362 EKALELTGLKV 372
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + Sbjct: 574 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Query: 210 E 212 E Sbjct: 631 E 631
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/64 (34%), Positives = 29/64 (45%) Frame = +3 Query: 6 HEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 H A + LF L D+ L FSRF +V+RDK TG + Y F+ F N Sbjct: 238 HVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKES 297 Query: 186 LAAA 197 + A Sbjct: 298 VEKA 301
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/56 (37%), Positives = 27/56 (48%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF L D+ L FSRF +V+RDKRTG + Y F+ F + D A Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQA 305
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + Sbjct: 573 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 210 E 212 E Sbjct: 630 E 630 Score = 31.2 bits (69), Expect = 2.5 Identities = 23/71 (32%), Positives = 33/71 (46%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E+ + LF G+L + L A S + N VV D RTG + +G+V F + DL Sbjct: 302 ESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDL 360 Query: 189 AAAXKRNEWKV 221 A + KV Sbjct: 361 EKALELTGLKV 371
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 38.9 bits (89), Expect = 0.012 Identities = 14/50 (28%), Positives = 30/50 (60%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +LF G + + + L + F + +++ DK++GK +G+GFV+F++ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFND 150 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E ++ L + ++ V+RD + +++G+GFV+FS ++ Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63 Query: 189 AAA 197 AA Sbjct: 64 DAA 66
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 38.9 bits (89), Expect = 0.012 Identities = 16/56 (28%), Positives = 33/56 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF + + + +D L + FS+F + +++R+ T ++G+GF+SFS + +A Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSA 158
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 38.9 bits (89), Expect = 0.012 Identities = 19/63 (30%), Positives = 35/63 (55%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 E E +LF G L E ++ L + ++ V+RD + +++G+GFV+FS+ ++ Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63 Query: 189 AAA 197 AA Sbjct: 64 DAA 66 Score = 36.6 bits (83), Expect = 0.060 Identities = 13/50 (26%), Positives = 29/50 (58%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +LF G + + + L F + + +++ D+++GK +G+GFV+F + Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 150
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 38.5 bits (88), Expect = 0.016 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 E+ D L+ +L + DD L F ++ ++RDK TGK +G FV F+ Sbjct: 191 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFN 245 Score = 36.2 bits (82), Expect = 0.078 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +3 Query: 18 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 N L L ++ D L F N +++RD +TG + GY FV F+ TD A Sbjct: 108 NGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRA 167 Query: 198 XK 203 K Sbjct: 168 IK 169
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 38.5 bits (88), Expect = 0.016 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 3 RHEAENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 ++ E+ +R LF + + ++ L + F + ++ D+ +GK KGY F+ + + Sbjct: 94 KNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE 153 Query: 180 TDLAAAXKRNEWK 218 D+ AA K + K Sbjct: 154 RDMHAAYKHADGK 166
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 38.5 bits (88), Expect = 0.016 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +3 Query: 6 HEAENDYR--LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 H A +D + +F G+L E +++ L K F S ++VRD +T KG+ +V F+ Sbjct: 220 HPAPHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNEL 279 Query: 180 TDLAAAXKRNE 212 ++ A NE Sbjct: 280 QSVSKALLLNE 290
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 38.5 bits (88), Expect = 0.016 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS--NPT 182 E E +LF G L E ++ L + ++ + V+RD + +++G+GFV+FS N Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEV 63 Query: 183 DLAAAXK 203 D A A + Sbjct: 64 DAAMATR 70 Score = 36.2 bits (82), Expect = 0.078 Identities = 13/50 (26%), Positives = 29/50 (58%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +LF G + + + L + F + + +++ DK++GK +G+ FV+F + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDD 150
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD--LAAAXK 203 L+ GDL V + +L AF+ F S ++ +D +G++ YG+ +F + D LA K Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 204 RN 209 N Sbjct: 86 NN 87 Score = 37.4 bits (85), Expect = 0.035 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 57 VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRNEWKVCWESP 236 V ++ L K FS+ + K++ D++ GK+KG+GFV FS P + A K ++ P Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKP 373 Query: 237 Y*IA*EQLEGEDR 275 +A Q + EDR Sbjct: 374 LYVAIAQ-KKEDR 385 Score = 35.0 bits (79), Expect = 0.17 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 3 RHEAENDY-RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 R + E Y L+ +L +V++D+L + F+ F + +D+ +GY FV+F NP Sbjct: 193 RVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNP 251 Query: 180 TDLAAAXK 203 D A + Sbjct: 252 EDARRAAE 259 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +F +L V + VL F +F + KV GK++GYGFV F AA Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAA 168
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G++ E ++ L FS S ++V D+ TGK KGYGF + + + A + RN Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMRN 76
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G++ E ++ L FS S ++V D+ TGK KGYGF + + + A + RN Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMRN 76
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 38.1 bits (87), Expect = 0.021 Identities = 17/48 (35%), Positives = 29/48 (60%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 R+F G + + + L++ FS + + K++ D R G +KGYGFV+F Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGYGFVTF 80
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 ++ +++F G L N +NDD + + F +V+D TG +KGY F + Sbjct: 204 DSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 38.1 bits (87), Expect = 0.021 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 E+ D L+ +L + DD L F ++ S ++RDK TG+ +G FV ++ Sbjct: 208 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 262 Score = 34.3 bits (77), Expect = 0.30 Identities = 18/65 (27%), Positives = 30/65 (46%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 + ++ L L ++ D L F N +++RD +TG + GY FV F++ D Sbjct: 122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDS 181 Query: 189 AAAXK 203 A K Sbjct: 182 QRAIK 186
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 38.1 bits (87), Expect = 0.021 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 E+ D L+ +L + DD L F ++ S ++RDK TG+ +G FV ++ Sbjct: 206 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 260 Score = 33.9 bits (76), Expect = 0.39 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 L ++ D L F N +++RD +TG + GY FV F++ D A K Sbjct: 132 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 184
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 38.1 bits (87), Expect = 0.021 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 + ++D +LF G L E + L F ++ V D +TG+++G+ F+ F+N Sbjct: 51 QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN 106 Score = 33.5 bits (75), Expect = 0.51 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP---TDLAAA 197 ++F G L E++D+ + F +F + ++ DK+ + KG+ F++F + TDL Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196 Query: 198 XKR 206 K+ Sbjct: 197 PKQ 199
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 37.7 bits (86), Expect = 0.027 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +LF G L + +++ L + F +F + K++ DK TGK +G+ FV F + Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDD 173 Score = 30.0 bits (66), Expect = 5.6 Identities = 14/55 (25%), Positives = 30/55 (54%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 E E+ +LF G L ++ L + ++ V+RD T +++G+GF++++ Sbjct: 27 ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYT 81
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 37.7 bits (86), Expect = 0.027 Identities = 18/53 (33%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +F G + +N+ + F ++ + K++ D RTG +KGYGFVSF + D+ Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITD-RTGVSKGYGFVSFLDNVDV 89
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 37.7 bits (86), Expect = 0.027 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS--NPTDLAAAX 200 +LF G L ++ +++ L + F F +V DK TGK +G+ F+ F +P D Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 201 KRNEWK 218 K + K Sbjct: 176 KTHSIK 181 Score = 37.0 bits (84), Expect = 0.046 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = +3 Query: 9 EAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 E E +LF G L DD L F ++ + V++D +T +++G+GF+++S Sbjct: 19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS 73
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 37.7 bits (86), Expect = 0.027 Identities = 17/56 (30%), Positives = 31/56 (55%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ L + ++ LSK F++F ++ R+K+TG ++ YGF+ F N D A Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIA 148
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 37.4 bits (85), Expect = 0.035 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 +LF G L + L FS++ +++DK T +++G+GFV F +P Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 37.4 bits (85), Expect = 0.035 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 +LF G L + L FS++ +++DK T +++G+GFV F +P Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 37.4 bits (85), Expect = 0.035 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 +LF G L + L FS++ +++DK T +++G+GFV F +P Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/121 (17%), Positives = 48/121 (39%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 R E ++F G + + + L + F+RF ++ D + +G+GF++F + Sbjct: 107 RTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 166 Query: 183 DLAAAXKRNEWKVCWESPY*IA*EQLEGEDRCRGSTKTKESYSEET*NTKEGYSSQVKLY 362 + A + + + E + + + G + + S +T G++ Q Sbjct: 167 SVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQT 226 Query: 363 W 365 W Sbjct: 227 W 227
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.035 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 A+++ + +L + + L + F F S + + +DK TG++KG+ F+SF D A Sbjct: 235 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294 Query: 192 AA 197 A Sbjct: 295 RA 296
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.035 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 A+++ + +L + + L + F F S + + +DK TG++KG+ F+SF D A Sbjct: 235 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294 Query: 192 AA 197 A Sbjct: 295 RA 296
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 37.0 bits (84), Expect = 0.046 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 E RLF ++ E +++ FS++ + + D RTGK+KG+ +V F D Sbjct: 307 EETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATR 366 Query: 195 AXK 203 A + Sbjct: 367 AYR 369
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 37.0 bits (84), Expect = 0.046 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Frame = +3 Query: 6 HEAENDY--RLFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVVRDKRTGKTKGYGFVSFSN 176 HE D +F G+L EV++ +L FS F + K++RD +G +KG+ F++F++ Sbjct: 92 HEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFAS 151
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 37.0 bits (84), Expect = 0.046 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 + E ++ L +L ++ ++ L F RF + +DK TG+ KG+ FVS+ Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 37.0 bits (84), Expect = 0.046 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = +3 Query: 12 AENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 A D R +F G+L ++ D L + F S ++VR+ TG +G+G+V F N + Sbjct: 286 ASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAV 345 Query: 189 AAAXKRN 209 A K N Sbjct: 346 HLALKLN 352
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 37.0 bits (84), Expect = 0.046 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +3 Query: 6 HEAENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 H+ E D R +F G++ +V + + F ++ D+ TG KGYG++ F +P Sbjct: 57 HQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPA 116 Query: 183 DLAAAXKRN 209 A + N Sbjct: 117 YREKALQLN 125
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 36.6 bits (83), Expect = 0.060 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +3 Query: 42 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +L E+N+D L F + + RDK TG KG+ FV+F + D A A Sbjct: 182 NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARA 233
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 36.6 bits (83), Expect = 0.060 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 LF G+L +V DD+L K F ++ + +GK KG+ F+ F N Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKN 289
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 36.6 bits (83), Expect = 0.060 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G+L E ++ L + F S + ++VRD +T KG+ ++ F + + A N Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331 Query: 210 EWKV 221 E K+ Sbjct: 332 EKKM 335
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 36.6 bits (83), Expect = 0.060 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 RLF +L + D + F F + + DK+T +KG FVSFS+P AA + Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 207 NE 212 + Sbjct: 375 KD 376
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 36.6 bits (83), Expect = 0.060 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS--NPTDLAAAX 200 +LF G L ++ ++ + F F + +V DK TGK +G+ FV F +P D Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 201 KRNE 212 K+++ Sbjct: 183 KQHQ 186
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +3 Query: 21 DYRLFCGDLGNEVND-DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 ++ LF GDL + D+LS +RF S +V+ D TG ++ +GFV F + Sbjct: 191 EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGD 243
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G++ E ++ L FS ++V D+ TGK KGYGF + + + A + RN Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMRN 76
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G++ E ++ L FS ++V D+ TGK KGYGF + + + A + RN Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMRN 76
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G++ E ++ L FS ++V D+ TGK KGYGF + + + A + RN Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMRN 76
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 36.2 bits (82), Expect = 0.078 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 +F G++ E ++ L FS ++V D+ TGK KGYGF + + + A + RN Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMRN 76
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 36.2 bits (82), Expect = 0.078 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 RLF ++ +D K FS + + D RTG++KG+ +V F N + A A Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 35.8 bits (81), Expect = 0.10 Identities = 18/53 (33%), Positives = 31/53 (58%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 LF G + +V+++ + + F+++ S K++ R G KGYGFV FS D+ Sbjct: 49 LFVGGIDMKVDENEIREFFAKYGSVKEVKIIT-YRGGICKGYGFVYFSEDVDI 100
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 35.8 bits (81), Expect = 0.10 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 L+ G L + + L F +F +V R K+TG +KGYGFV F Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEF 93
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 35.8 bits (81), Expect = 0.10 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK-- 203 LF G+L E D L + F + +++ + TGK KG+GFV F + A + Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289 Query: 204 RNEWKV 221 N W++ Sbjct: 290 HNSWRL 295
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 35.8 bits (81), Expect = 0.10 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = +3 Query: 12 AENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 A D R +F G+L V++ L + F S ++VR+ TG +G+G+V F N + Sbjct: 280 ASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAV 339 Query: 189 AAAXKRN 209 A K N Sbjct: 340 HLALKLN 346
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 35.8 bits (81), Expect = 0.10 Identities = 16/63 (25%), Positives = 31/63 (49%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF + + + L + F + +V +KR+GK +GY F+ + + D+ +A K Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 210 EWK 218 + K Sbjct: 165 DGK 167
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 35.8 bits (81), Expect = 0.10 Identities = 15/56 (26%), Positives = 31/56 (55%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ G+L +V++ L+ F+ + S ++ D+ TG+ +G+GFV + AA Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAA 58
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 L + FSR+ + VV D+RTG+++G+ FV F D A +R Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMER 177
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 L + FSR+ + VV D+RTG+++G+ FV F D A +R Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMER 179
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 35.8 bits (81), Expect = 0.10 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 RLF ++ +D K FS + V D RTG +KG+ +V F+ P + A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQA 382
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L ++ D L F N +++RD +TG + GYGFV F + D A Sbjct: 85 LPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRA 135
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 35.8 bits (81), Expect = 0.10 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = +3 Query: 6 HEAENDYR--LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 H A +D + +F G+L E +++ L K F ++VRD +T KG+ +V F++ Sbjct: 251 HPAPHDRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADL 310 Query: 180 TDLAAAXKRNEWKV 221 + A N+ K+ Sbjct: 311 VSVNKALLLNDKKM 324
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 35.8 bits (81), Expect = 0.10 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF L D L FSRF +V++DK+TG + Y F+ F D A Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERA 319
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 35.4 bits (80), Expect = 0.13 Identities = 16/63 (25%), Positives = 30/63 (47%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF + + + L + F + +V KR+GK +GY F+ + + D+ +A K Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 210 EWK 218 + K Sbjct: 165 DGK 167
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 35.4 bits (80), Expect = 0.13 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +F G L E+ + + FS++ +VRDK+TGK+KG+ F+ + + Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYED 86
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 35.4 bits (80), Expect = 0.13 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF L D+ L FSRF +V+RD +TG++ Y F+ F D A Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 35.4 bits (80), Expect = 0.13 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF L D+ L FSRF +V+RD +TG++ Y F+ F D A Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 35.4 bits (80), Expect = 0.13 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN--PTDLAAAXK 203 LF G+L V++ VL FS A V G++KGYGFVS+ + D A Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 204 RNEW 215 N++ Sbjct: 161 NNQF 164
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 35.4 bits (80), Expect = 0.13 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +3 Query: 9 EAENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 185 E E D R +F L N + L F + A++VRDK +G++KG +V F + Sbjct: 234 EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDS 293 Query: 186 LAAA 197 + AA Sbjct: 294 VQAA 297
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 35.4 bits (80), Expect = 0.13 Identities = 22/58 (37%), Positives = 26/58 (44%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 L+ L D L K + K + DK T K KGYGFV F +P AAA K Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP---AAAQK 118
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 35.4 bits (80), Expect = 0.13 Identities = 22/58 (37%), Positives = 26/58 (44%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 L+ L D L K + K + DK T K KGYGFV F +P AAA K Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSP---AAAQK 118
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 35.4 bits (80), Expect = 0.13 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF + +V D+ L+ FS F A VV+D +++G+GFVSF+ D A Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEA 82
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 35.4 bits (80), Expect = 0.13 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 +F G L E+ + + FS++ +VRDK+TGK+KG+ F+ + + Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYED 86
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 35.4 bits (80), Expect = 0.13 Identities = 16/63 (25%), Positives = 30/63 (47%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRN 209 LF + + + L + F + +V KR+GK +GY F+ + + D+ +A K Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 210 EWK 218 + K Sbjct: 165 DGK 167
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 35.0 bits (79), Expect = 0.17 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = +3 Query: 6 HEAENDYR--LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 H + +D R +F G+L E ++ L K F +++RD +T KG+ +V F + Sbjct: 351 HPSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDF 410 Query: 180 TDLAAAXKRNEWKV 221 ++ A +E K+ Sbjct: 411 QSVSKALLLHEKKI 424
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.0 bits (79), Expect = 0.17 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP--TDLAAAX 200 ++F G L + + L + F +F V+RD T +++G+GFV+F + D A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 201 KRNE 212 R+E Sbjct: 81 SRHE 84
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.0 bits (79), Expect = 0.17 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP--TDLAAAX 200 ++F G L + + L + F +F V+RD T +++G+GFV+F + D A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 201 KRNE 212 R+E Sbjct: 81 SRHE 84
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.0 bits (79), Expect = 0.17 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP--TDLAAAX 200 ++F G L + + L + F +F V+RD T +++G+GFV+F + D A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 201 KRNE 212 R+E Sbjct: 81 SRHE 84
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 35.0 bits (79), Expect = 0.17 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +3 Query: 3 RHEAENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 +H +F G + ++ LS FS++ K++ DK G+ GYGF+S+ Sbjct: 188 KHALTYPGNIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISY 243 Score = 31.2 bits (69), Expect = 2.5 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 126 DKRTGKTKGYGFVSFSNPTDLAAA 197 D G ++GYGFVSF +P D A A Sbjct: 593 DLPVGSSRGYGFVSFESPLDAAKA 616
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 35.0 bits (79), Expect = 0.17 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = +3 Query: 6 HEAENDYR--LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 H D++ +F G L E ++ L +AFS ++VRD +T KG+ +V F + Sbjct: 266 HPGAQDHKRCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDV 325 Query: 180 TDLAAAXKRN 209 + A N Sbjct: 326 NSVEQALLLN 335
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 35.0 bits (79), Expect = 0.17 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 L N +++ + FS+F + ++ R KRTG +KGY FV F + Sbjct: 52 LPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFES 95
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 34.7 bits (78), Expect = 0.23 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = +3 Query: 15 ENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 E+D R LF G+L V + L +AF RF + R R G+T YGF+ F N Sbjct: 367 EDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSR-GQTSTYGFLKFEN 423
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 34.7 bits (78), Expect = 0.23 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L+ L D L K + K + DK T K KGYGFV F +P+ A Sbjct: 60 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKA 115
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 34.7 bits (78), Expect = 0.23 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 LF L D+ L FSRF +V+RD++TG + Y F+ F + Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFED 303
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 34.7 bits (78), Expect = 0.23 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 LF L D+ L FSRF +VVRDK++G + Y F+ F Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEF 294
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +3 Query: 6 HEAENDYR--LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 179 H A +D + +F G+L E ++ L K F +++RD +T KG+ +V F + Sbjct: 271 HPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDL 330 Query: 180 TDLAAAXKRNE 212 + A NE Sbjct: 331 QSVNKALLLNE 341
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 34.7 bits (78), Expect = 0.23 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 RLF ++ + ++ + FS + V D RTG++KG+ +V F +P A A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANA 358
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 34.3 bits (77), Expect = 0.30 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 ++ G + + + L + FS+F + ++ R K+TG +KGY +V F Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 34.3 bits (77), Expect = 0.30 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAX 200 D +++ G+LGN N L +AF + V R+ G+ FV F +P D A A Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAV 63 Query: 201 K 203 + Sbjct: 64 R 64
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 34.3 bits (77), Expect = 0.30 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAX 200 D +++ G+LGN N L +AF + V R+ G+ FV F +P D A A Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAV 63 Query: 201 K 203 + Sbjct: 64 R 64
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 34.3 bits (77), Expect = 0.30 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 182 L+ L D L K + K + DK T K KGYGFV F +P+ Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS 108
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 33.9 bits (76), Expect = 0.39 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +3 Query: 42 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKRNEWKV 221 +L + + L + F R+ + RDK + ++KG+GFV F D A R + K+ Sbjct: 25 NLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKL 84
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 33.9 bits (76), Expect = 0.39 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 LF L D+ L F RF +V+RD++TG + Y F+ + + AA Sbjct: 253 LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAA 308
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 33.9 bits (76), Expect = 0.39 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 RLF +L E + L FS F V D R +KG+ +V +++P D A R Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADP-DAAVEAYR 354 Query: 207 N 209 N Sbjct: 355 N 355
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 33.9 bits (76), Expect = 0.39 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = +3 Query: 12 AENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 191 A+ RL +L + ++D L F++F + + R K GK +G+GFV F N + Sbjct: 109 ADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAG 167 Query: 192 AAXK 203 A K Sbjct: 168 KALK 171
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 33.5 bits (75), Expect = 0.51 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 L AFS + +K++ D+ T +++G+GFV+FS + +A Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSA 44
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 33.5 bits (75), Expect = 0.51 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 L + FS F M +V +D +TG +KG+GFV F+ Sbjct: 120 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 153
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 33.1 bits (74), Expect = 0.66 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 RLF +L + ++ L FS+F V D R+ +KG+ +V + P A K Sbjct: 302 RLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKE 361 Query: 207 NEWK 218 + K Sbjct: 362 LDGK 365
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 33.1 bits (74), Expect = 0.66 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 ++ G L + +++ + ++F + ++ R KRTG +KGY FV F + Sbjct: 49 VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFES 97
>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372 kDa| Golgi complex-associated protein) (GCP372) Length = 3259 Score = 32.7 bits (73), Expect = 0.87 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Frame = +1 Query: 151 VMDSSVFQTLQTSLQQXKEMNGKYVGNRPIKLRKS---NWKERTDVEALQRQKNHIQKKP 321 + DS Q L+ LQQ KE+ KY KL++S N R ALQ +K + K+ Sbjct: 2546 IKDSQQKQLLEVQLQQNKELENKY-AKLEEKLKESEEANEDLRRSFNALQEEKQDLSKEI 2604 Query: 322 KTQKKGI---------LHK*SSIGLYRVSPVEQDLLLWMKDI*KIHGLFS 444 ++ K I L + ++GLY L + +++ ++ LFS Sbjct: 2605 ESLKVSISQLTRQVTALQEEGTLGLYHA-----QLKVKEEEVHRLSALFS 2649
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 32.7 bits (73), Expect = 0.87 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 173 L FS F M +V +D +TG +KG+GFV F+ Sbjct: 120 LKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 153
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 32.7 bits (73), Expect = 0.87 Identities = 15/69 (21%), Positives = 34/69 (49%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 E+ ++F G L + + L F++F + D TG+++G+GF+ F + + + Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131 Query: 195 AXKRNEWKV 221 + E ++ Sbjct: 132 VLDQKEHRL 140
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAX 200 ++++F G L + L FS+F + D TG+++G+GFV F + Sbjct: 96 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Query: 201 KRNEWKV 221 + E K+ Sbjct: 156 DQKEHKL 162
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAX 200 ++++F G L + L FS+F + D TG+++G+GFV F + Sbjct: 96 EWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Query: 201 KRNEWKV 221 + E K+ Sbjct: 156 DQKEHKL 162
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 60 NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ VL + FS F VVRDK T ++KG FV F+ + A Sbjct: 37 SESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRA 82 Score = 31.2 bits (69), Expect = 2.5 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +3 Query: 63 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ L + F + V+++K TG++KG G+V + P+ A A Sbjct: 133 EEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQA 177
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3 Query: 63 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 + VL + FS F VVRDK T ++KG FV F+ + A Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRA 82 Score = 30.8 bits (68), Expect = 3.3 Identities = 12/45 (26%), Positives = 25/45 (55%) Frame = +3 Query: 63 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ L + F + ++++K TG++KG G+V + P+ A A Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQA 177
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/69 (21%), Positives = 33/69 (47%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 194 E+ ++F G L + + L F++F + D TG+++G+GF+ F + + Sbjct: 65 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 124 Query: 195 AXKRNEWKV 221 + E ++ Sbjct: 125 VLDQKEHRL 133
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/65 (24%), Positives = 32/65 (49%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 RLF +L ++ + FS++ + + +TG+ KG+ V F +P + AA + Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 207 NEWKV 221 + K+ Sbjct: 362 QDGKI 366
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 32.3 bits (72), Expect = 1.1 Identities = 12/47 (25%), Positives = 27/47 (57%) Frame = +3 Query: 30 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 ++ G + + + L + F++F + ++ R K+TG +KGY +V + Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAX 200 ++++F G L + L FS+F + D TG+++G+GFV F + Sbjct: 94 EWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 153 Query: 201 KRNEWKV 221 + E K+ Sbjct: 154 DQKEHKL 160
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 45 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 + ++ VL + FS F VVRDK T ++KG FV F+ + A Sbjct: 32 ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRA 82 Score = 30.8 bits (68), Expect = 3.3 Identities = 12/45 (26%), Positives = 25/45 (55%) Frame = +3 Query: 63 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 ++ L + F + ++++K TG++KG G+V + P+ A A Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQA 177
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 31.6 bits (70), Expect = 1.9 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 RLF +L +D L F F + DK+T KG+ ++ F + D A Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 31.6 bits (70), Expect = 1.9 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 RLF ++ ++ K FS F V D RTG++KG+ +V F + Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKD 395
>IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) Length = 803 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = +3 Query: 66 DVLSKAFSRFPSFNMAKVVRD---KRTGKTKGYGFVSFSNPTDLAAAXK 203 +V+ K FS+F K++ D + GKTKGY F+ +++P A K Sbjct: 194 NVIHKIFSKF-----GKIINDYYPEEDGKTKGYIFLEYASPAHAVDAVK 237
>IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) Length = 797 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = +3 Query: 66 DVLSKAFSRFPSFNMAKVVRD---KRTGKTKGYGFVSFSNPTDLAAAXK 203 +V+ K FS+F K++ D + GKTKGY F+ +++P A K Sbjct: 188 NVIHKIFSKF-----GKIINDYYPEEDGKTKGYIFLEYASPAHAVDAVK 231
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 30.8 bits (68), Expect = 3.3 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 170 R+F G + L + F +F + K+V+ G++KGYGF++F Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSL-DGQSKGYGFITF 114
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 30.4 bits (67), Expect = 4.3 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 RLF +L ++ L K FS++ + D T K KG+ F++F P A Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462 Query: 207 NEWKV 221 + +V Sbjct: 463 VDGQV 467
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 30.4 bits (67), Expect = 4.3 Identities = 14/59 (23%), Positives = 29/59 (49%) Frame = +3 Query: 27 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXK 203 +LF G + ++ + F + + +++DKRTG+ +G FV ++ D A + Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIR 179 Score = 29.3 bits (64), Expect = 9.6 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = +3 Query: 21 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 197 +++LF G L + + + + F +F ++RD+ +++G GFV +S+ AA Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAA 267
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 12/77 (15%) Frame = +3 Query: 3 RHEAENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVVRDKRTGKT 146 RH++E D +F LG V + ++ F + M + D+ TGK Sbjct: 267 RHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL 326 Query: 147 KGYGFVSFSNPTDLAAA 197 KG VSF +P AA Sbjct: 327 KGEATVSFDDPPSAKAA 343
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 12/77 (15%) Frame = +3 Query: 3 RHEAENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVVRDKRTGKT 146 RH++E D +F LG V + ++ F + M + D+ TGK Sbjct: 274 RHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL 333 Query: 147 KGYGFVSFSNPTDLAAA 197 KG VSF +P AA Sbjct: 334 KGEATVSFDDPPSAKAA 350
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 12/77 (15%) Frame = +3 Query: 3 RHEAENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVVRDKRTGKT 146 RH++E D +F LG V + ++ F + M + D+ TGK Sbjct: 260 RHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL 319 Query: 147 KGYGFVSFSNPTDLAAA 197 KG VSF +P AA Sbjct: 320 KGEATVSFDDPPSAKAA 336
>PLCB4_HUMAN (Q15147) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 30.0 bits (66), Expect = 5.6 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = -2 Query: 549 CKNMLVTQIEQNIAY*ALQFNRYIIILAHIDRCCKTEQ---PMYLSDVLHPKEQVLFYRA 379 C ++L + Q I A + Y +IL+ + C K +Q Y D+ + Sbjct: 380 CTDILFKDVIQAIKETAFVTSEYPVILSFENHCSKYQQYKMSKYCEDLFGDLLLKQALES 439 Query: 378 HPVQPNRALLVKNTL 334 HP++P RAL N L Sbjct: 440 HPLEPGRALPSPNDL 454
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +3 Query: 15 ENDYRLFCGDLGNEVNDDVLSKAFSRF--PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 188 +N +F G+L E ++ L K F+ +++RD +T KG+ V F + + Sbjct: 262 DNKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSV 321 Query: 189 AAAXKRNE 212 A N+ Sbjct: 322 NKALLLND 329
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 L + FS++ +V D+++ +++G+ FV F N D A +R Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 178
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 L + FS++ +V D+++ +++G+ FV F N D A +R Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 178
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +3 Query: 72 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAXKR 206 L + FS++ +V D+++ +++G+ FV F N D A +R Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 178
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 93 FPSFNMAKVVRDKRTGKTKGYGFVSFSN 176 F VVR+K TGK++G FV+FS+ Sbjct: 215 FAPIPRVSVVRNKETGKSRGLAFVTFSS 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,438,658 Number of Sequences: 219361 Number of extensions: 1641648 Number of successful extensions: 4640 Number of sequences better than 10.0: 262 Number of HSP's better than 10.0 without gapping: 4405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4627 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
