ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags22c20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 31 1.1
2CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 29 3.1
3DPP4_RAT (P14740) Dipeptidyl peptidase 4 (EC 3.4.14.5) (Dipeptid... 28 9.2

>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 46  MPNTDRAFKLNWAS-YSVGEKRSELASDHSIF 138
           +P T+  FKLNWAS   + EK    AS++SIF
Sbjct: 158 IPGTNHLFKLNWASGGGLREKSISKASEYSIF 189



to top

>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   AXAEKALQNFAGHVMPNTDRAFKLNWAS 87
           A AE+AL  +   ++P     FKLNWA+
Sbjct: 139 AAAERALMKYNNTMIPGAHCTFKLNWAT 166



to top

>DPP4_RAT (P14740) Dipeptidyl peptidase 4 (EC 3.4.14.5) (Dipeptidyl peptidase|
           IV) (DPP IV) (T-cell activation antigen CD26) (GP110
           glycoprotein) (Bile canaliculus domain-specific membrane
           glycoprotein) [Contains: Dipeptidyl peptidase 4 membrane
           form (Dipe
          Length = 767

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 31  FAGHVMPNTDRAFKLNWASYSVGEKRSELAS 123
           +AG      D AF+LNWA+Y    +   +AS
Sbjct: 548 YAGPCSQKADAAFRLNWATYLASTENIIVAS 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.126    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,738,279
Number of Sequences: 219361
Number of extensions: 121472
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top