ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 319 5e-84
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 319 5e-84
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 319 5e-84
4ref|NM_113207.2| Arabidopsis thaliana unknown protein AT3G23070 ... 66 1e-07
5dbj|AB026655.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 66 1e-07
6gb|AC148487.14| Medicago truncatula clone mth2-57f20, complete s... 64 5e-07
7ref|XM_472782.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
8emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 48 0.029
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
10emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 48 0.029
11ref|NM_117531.2| Arabidopsis thaliana unknown protein AT4G14510 ... 46 0.12
12ref|NM_111003.3| Arabidopsis thaliana unknown protein AT3G01370 ... 46 0.12
13ref|NM_119121.1| Arabidopsis thaliana unknown protein AT4G29750 ... 46 0.12
14gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC... 46 0.12
15gb|BT010594.1| Arabidopsis thaliana At3g01370 gene, complete cds 46 0.12
16emb|AL079344.1|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BA... 46 0.12
17emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, ... 46 0.12
18gb|AY136347.1| Arabidopsis thaliana unknown protein (At3g01370) ... 46 0.12
19emb|BX823961.1|CNS0A5OS Arabidopsis thaliana Full-length cDNA Co... 46 0.12
20ref|XM_475863.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
21gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
22gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
23emb|AL359547.26| Human DNA sequence from clone RP11-715G15 on ch... 42 1.8
24gb|BC034912.1| Homo sapiens cDNA clone IMAGE:5272441 42 1.8
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
26gb|AC079299.5| Homo sapiens BAC clone RP11-91N6 from 2, complete... 42 1.8
27dbj|AB059398.1| Bos taurus MyHC-2a mRNA for myosin heavy chain 2... 42 1.8
28dbj|AB012849.1| Bos taurus mRNA for type 2a myosin heavy chain, ... 42 1.8
29dbj|AB058896.1| Ovis aries OMyHC2a mRNA for myosin heavy chain 2... 42 1.8
30gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome... 40 7.1
31ref|NM_133519.1| Rattus norvegicus interleukin 11 (Il11), mRNA 40 7.1
32gb|AF347935.1| Rattus norvegicus interleukin 11 precursor, mRNA,... 40 7.1
33gb|DQ481663.1| Takifugu rubripes HoxAa gene cluster, complete se... 40 7.1
34emb|CT009638.5| Zebrafish DNA sequence from clone CH73-162A18 in... 40 7.1
35emb|Z69792.1|CEF40E10 Caenorhabditis elegans Cosmid F40E10, comp... 40 7.1
36gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, com... 40 7.1
37emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on ch... 40 7.1
38emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 7.1
39emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, ... 40 7.1
40gb|AC108685.4| Homo sapiens X BAC RP11-323F16 (Roswell Park Canc... 40 7.1
41gb|AC157489.18| Medicago truncatula clone mth2-70e3, complete se... 40 7.1
42gb|AC106713.3| Homo sapiens X BAC RP11-770A12 (Roswell Park Canc... 40 7.1
43gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, comp... 40 7.1
44gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 40 7.1
45ref|NM_078039.3| Caenorhabditis elegans F40E10.1 (metalloproteas... 40 7.1
46ref|XM_346531.2| PREDICTED: Rattus norvegicus hypothetical LOC36... 40 7.1
47gb|AC117831.6| Mus musculus chromosome 15, clone RP24-106E17, co... 40 7.1
48gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.10... 40 7.1
49gb|U59223.1|PHU59223 Plexaura homomalla 8(R)-lipoxygenase mRNA, ... 40 7.1
50emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chr... 40 7.1
51gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 7.1
52emb|AL672286.9| Mouse DNA sequence from clone RP23-48B17 on chro... 40 7.1
53emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chro... 40 7.1
54dbj|D85744.1|CELHCH1 Caenorhabditis elegans mRNA for HCH-1, comp... 40 7.1 
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score =  319 bits (161), Expect = 5e-84
 Identities = 242/269 (89%)
 Strand = Plus / Minus

                                                                         
Query: 158   agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 217
             |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 22904 agaggagtttttgatggcacgattgaaaatatgcacttgcactggaagtacagggaacta 22845

                                                                         
Query: 218   gtgaaaatactggtgaaagcaaagtcttttgcagatgtcaagaggacagcgctatcactt 277
             ||||||||||| ||||||||||||||||||| ||||||||||| ||  ||  | || |||
Sbjct: 22844 gtgaaaatacttgtgaaagcaaagtcttttggagatgtcaagaagattgcattgtctctt 22785

                                                                         
Query: 278   gaagttgagagtgggggcgttttagtttctgtggacaaggtctccaaaggctatgccatt 337
             |||| ||||||||||||  ||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 22784 gaagctgagagtgggggtattttagtttctgtggacaaagtctccaaaggttatgccatc 22725

                                                                         
Query: 338   gttgtgtttcgtgggaaggactataaacgtccttctatgctgagaccaaggaatcttttg 397
             |||||||| |||||||||||||||  ||| ||||||| ||||||||| ||||||||||||
Sbjct: 22724 gttgtgttccgtgggaaggactatgcacgcccttctaagctgagacccaggaatcttttg 22665

                                          
Query: 398   tcaaagagaaaggctttagctcgatccat 426
             |||||| | ||||||||||||||||||||
Sbjct: 22664 tcaaagcggaaggctttagctcgatccat 22636



 Score =  157 bits (79), Expect = 4e-35
 Identities = 115/127 (90%)
 Strand = Plus / Minus

                                                                         
Query: 29    cttggaaaagtcgagactgccttgaagccaactgaagataccaaaccacctgaaacaata 88
             ||||||||||| ||||| ||| ||||||||||||||| || | |||| ||||||||||||
Sbjct: 23265 cttggaaaagttgagacagccctgaagccaactgaaggtatccaaccgcctgaaacaata 23206

                                                                         
Query: 89    accgatgaagagaggttcatgtttcggaaacttggtttaaggatgaaggcatttttgctc 148
             || ||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||
Sbjct: 23205 acagatgaagagagattcatgtttcggaaacttggtctaaggatgaaggcattcctgctc 23146

                    
Query: 149   cttggta 155
             |||||||
Sbjct: 23145 cttggta 23139
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  319 bits (161), Expect = 5e-84
 Identities = 242/269 (89%)
 Strand = Plus / Minus

                                                                            
Query: 158      agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 217
                |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 21670851 agaggagtttttgatggcacgattgaaaatatgcacttgcactggaagtacagggaacta 21670792

                                                                            
Query: 218      gtgaaaatactggtgaaagcaaagtcttttgcagatgtcaagaggacagcgctatcactt 277
                ||||||||||| ||||||||||||||||||| ||||||||||| ||  ||  | || |||
Sbjct: 21670791 gtgaaaatacttgtgaaagcaaagtcttttggagatgtcaagaagattgcattgtctctt 21670732

                                                                            
Query: 278      gaagttgagagtgggggcgttttagtttctgtggacaaggtctccaaaggctatgccatt 337
                |||| ||||||||||||  ||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 21670731 gaagctgagagtgggggtattttagtttctgtggacaaagtctccaaaggttatgccatc 21670672

                                                                            
Query: 338      gttgtgtttcgtgggaaggactataaacgtccttctatgctgagaccaaggaatcttttg 397
                |||||||| |||||||||||||||  ||| ||||||| ||||||||| ||||||||||||
Sbjct: 21670671 gttgtgttccgtgggaaggactatgcacgcccttctaagctgagacccaggaatcttttg 21670612

                                             
Query: 398      tcaaagagaaaggctttagctcgatccat 426
                |||||| | ||||||||||||||||||||
Sbjct: 21670611 tcaaagcggaaggctttagctcgatccat 21670583



 Score =  157 bits (79), Expect = 4e-35
 Identities = 115/127 (90%)
 Strand = Plus / Minus

                                                                            
Query: 29       cttggaaaagtcgagactgccttgaagccaactgaagataccaaaccacctgaaacaata 88
                ||||||||||| ||||| ||| ||||||||||||||| || | |||| ||||||||||||
Sbjct: 21671212 cttggaaaagttgagacagccctgaagccaactgaaggtatccaaccgcctgaaacaata 21671153

                                                                            
Query: 89       accgatgaagagaggttcatgtttcggaaacttggtttaaggatgaaggcatttttgctc 148
                || ||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||
Sbjct: 21671152 acagatgaagagagattcatgtttcggaaacttggtctaaggatgaaggcattcctgctc 21671093

                       
Query: 149      cttggta 155
                |||||||
Sbjct: 21671092 cttggta 21671086
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  319 bits (161), Expect = 5e-84
 Identities = 242/269 (89%)
 Strand = Plus / Minus

                                                                            
Query: 158      agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 217
                |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 21981050 agaggagtttttgatggcacgattgaaaatatgcacttgcactggaagtacagggaacta 21980991

                                                                            
Query: 218      gtgaaaatactggtgaaagcaaagtcttttgcagatgtcaagaggacagcgctatcactt 277
                ||||||||||| ||||||||||||||||||| ||||||||||| ||  ||  | || |||
Sbjct: 21980990 gtgaaaatacttgtgaaagcaaagtcttttggagatgtcaagaagattgcattgtctctt 21980931

                                                                            
Query: 278      gaagttgagagtgggggcgttttagtttctgtggacaaggtctccaaaggctatgccatt 337
                |||| ||||||||||||  ||||||||||||||||||| ||||||||||| |||||||| 
Sbjct: 21980930 gaagctgagagtgggggtattttagtttctgtggacaaagtctccaaaggttatgccatc 21980871

                                                                            
Query: 338      gttgtgtttcgtgggaaggactataaacgtccttctatgctgagaccaaggaatcttttg 397
                |||||||| |||||||||||||||  ||| ||||||| ||||||||| ||||||||||||
Sbjct: 21980870 gttgtgttccgtgggaaggactatgcacgcccttctaagctgagacccaggaatcttttg 21980811

                                             
Query: 398      tcaaagagaaaggctttagctcgatccat 426
                |||||| | ||||||||||||||||||||
Sbjct: 21980810 tcaaagcggaaggctttagctcgatccat 21980782



 Score =  157 bits (79), Expect = 4e-35
 Identities = 115/127 (90%)
 Strand = Plus / Minus

                                                                            
Query: 29       cttggaaaagtcgagactgccttgaagccaactgaagataccaaaccacctgaaacaata 88
                ||||||||||| ||||| ||| ||||||||||||||| || | |||| ||||||||||||
Sbjct: 21981411 cttggaaaagttgagacagccctgaagccaactgaaggtatccaaccgcctgaaacaata 21981352

                                                                            
Query: 89       accgatgaagagaggttcatgtttcggaaacttggtttaaggatgaaggcatttttgctc 148
                || ||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||
Sbjct: 21981351 acagatgaagagagattcatgtttcggaaacttggtctaaggatgaaggcattcctgctc 21981292

                       
Query: 149      cttggta 155
                |||||||
Sbjct: 21981291 cttggta 21981285
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>ref|NM_113207.2| Arabidopsis thaliana unknown protein AT3G23070 mRNA, complete cds
          Length = 3478

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                        
Query: 356  gactataaacgtccttctatgctgagaccaaggaatcttttgtcaaagagaaaggcttta 415
            |||||||| |||||| | ||| ||||||| |  ||||||||| ||||||| |||||||||
Sbjct: 2261 gactataagcgtcctaccatgttgagaccgaaaaatcttttgacaaagaggaaggcttta 2320

                             
Query: 416  gctcgatccattgagct 432
            || || |||||||||||
Sbjct: 2321 gcgcgttccattgagct 2337



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 100/125 (80%)
 Strand = Plus / Plus

                                                                        
Query: 86   ataaccgatgaagagaggttcatgtttcggaaacttggtttaaggatgaaggcatttttg 145
            ||||| ||||||||||| || ||||| || || ||||| || |  ||||| || || || 
Sbjct: 1991 ataactgatgaagagagatttatgttccgcaagcttggcttgaaaatgaaagctttctta 2050

                                                                        
Query: 146  ctccttggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaa 205
            || || |||||  ||||||| |||||||| ||| | || || ||||||||||| ||||||
Sbjct: 2051 cttctaggtaggcgaggagtgtttgatggtacagtggagaacatgcacttgcattggaaa 2110

                 
Query: 206  tacag 210
            |||||
Sbjct: 2111 tacag 2115
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>dbj|AB026655.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXC7
          Length = 79284

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                         
Query: 356   gactataaacgtccttctatgctgagaccaaggaatcttttgtcaaagagaaaggcttta 415
             |||||||| |||||| | ||| ||||||| |  ||||||||| ||||||| |||||||||
Sbjct: 47087 gactataagcgtcctaccatgttgagaccgaaaaatcttttgacaaagaggaaggcttta 47146

                              
Query: 416   gctcgatccattgagct 432
             || || |||||||||||
Sbjct: 47147 gcgcgttccattgagct 47163



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 159   gaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacag 210
             ||||||| |||||||| ||| | || || ||||||||||| |||||||||||
Sbjct: 46890 gaggagtgtttgatggtacagtggagaacatgcacttgcattggaaatacag 46941
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>gb|AC148487.14| Medicago truncatula clone mth2-57f20, complete sequence
          Length = 119671

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 152   ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 211
             |||||| | ||||||||||| || || ||||| || ||||||||||||||||| ||| ||
Sbjct: 97315 ggtagacgtggagtttttgacggtactatcgagaacatgcacttgcactggaagtaccgg 97256

                     
Query: 212   gaactggt 219
             ||||||||
Sbjct: 97255 gaactggt 97248



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 368   ccttctatgctgagaccaaggaatcttttgtcaaagagaaaggcttt 414
             ||||| ||| ||||||| | |||||| ||| ||||||||||||||||
Sbjct: 97099 ccttcaatgttgagaccgaagaatctcttgacaaagagaaaggcttt 97053



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 77    cctgaaacaataaccgatgaagagaggttcatgtttcg 114
             |||||||  ||||||||||||||||| || ||||||||
Sbjct: 97583 cctgaaagtataaccgatgaagagagatttatgtttcg 97546
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>ref|XM_472782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3039

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 103/128 (80%)
 Strand = Plus / Plus

                                                                        
Query: 98   gagaggttcatgtttcggaaacttggtttaaggatgaaggcatttttgctccttggtaga 157
            ||||||| ||||||  ||||| ||||||||| ||||||  |||| ||  | || || || 
Sbjct: 1750 gagaggtacatgttgaggaaagttggtttaaagatgaaatcattcttattgctaggaagg 1809

                                                                        
Query: 158  agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 217
            ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 1810 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 1869

                    
Query: 218  gtgaaaat 225
            || |||||
Sbjct: 1870 gtcaaaat 1877
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>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
             complete sequence
          Length = 139418

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 158   agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 217
             ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 79071 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 79012

                     
Query: 218   gtgaaaat 225
             || |||||
Sbjct: 79011 gtcaaaat 79004
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 158      agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 217
                ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 23188879 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 23188820

                        
Query: 218      gtgaaaat 225
                || |||||
Sbjct: 23188819 gtcaaaat 23188812
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 158   agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 217
             ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 27032 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 26973

                     
Query: 218   gtgaaaat 225
             || |||||
Sbjct: 26972 gtcaaaat 26965
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>ref|NM_117531.2| Arabidopsis thaliana unknown protein AT4G14510 mRNA, complete cds
          Length = 3015

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 149  cttggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaata 207
            |||||| ||||||| || |||||||| ||  | || || ||||||||||||||||||||
Sbjct: 2233 cttggtcgaagaggggtgtttgatgggactgtagagaacatgcacttgcactggaaata 2291
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>ref|NM_111003.3| Arabidopsis thaliana unknown protein AT3G01370 mRNA, complete cds
          Length = 3273

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 152  ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 211
            ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 1823 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 1882

                       
Query: 212  gaactggtgaa 222
            ||||| |||||
Sbjct: 1883 gaacttgtgaa 1893
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>ref|NM_119121.1| Arabidopsis thaliana unknown protein AT4G29750 mRNA, complete cds
          Length = 2331

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 406  aaaggctttagctcgatccattgagct 432
            ||||||||| |||||||||||||||||
Sbjct: 2133 aaaggcttttgctcgatccattgagct 2159
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>gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence,
             complete sequence
          Length = 86324

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                         
Query: 152   ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 211
             ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 44273 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 44332

                        
Query: 212   gaactggtgaa 222
             ||||| |||||
Sbjct: 44333 gaacttgtgaa 44343
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>gb|BT010594.1| Arabidopsis thaliana At3g01370 gene, complete cds
          Length = 3036

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 152  ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 211
            ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 1801 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 1860

                       
Query: 212  gaactggtgaa 222
            ||||| |||||
Sbjct: 1861 gaacttgtgaa 1871
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>emb|AL079344.1|ATT16L4 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project)
          Length = 88011

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 406   aaaggctttagctcgatccattgagct 432
             ||||||||| |||||||||||||||||
Sbjct: 82271 aaaggcttttgctcgatccattgagct 82297
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>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71
          Length = 200001

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 406    aaaggctttagctcgatccattgagct 432
              ||||||||| |||||||||||||||||
Sbjct: 107086 aaaggcttttgctcgatccattgagct 107112
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>gb|AY136347.1| Arabidopsis thaliana unknown protein (At3g01370) mRNA, complete cds
          Length = 3126

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 152  ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 211
            ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 1823 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 1882

                       
Query: 212  gaactggtgaa 222
            ||||| |||||
Sbjct: 1883 gaacttgtgaa 1893
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>emb|BX823961.1|CNS0A5OS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH10ZF05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1851

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 152 ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 211
           ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 571 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 630

                      
Query: 212 gaactggtgaa 222
           ||||| |||||
Sbjct: 631 gaacttgtgaa 641
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>ref|XM_475863.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2397

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 182  gaaaatatgcacttgcactggaaatacagggaa 214
            ||||||||||||||||| |||||  ||||||||
Sbjct: 1888 gaaaatatgcacttgcattggaagcacagggaa 1920
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0079H23, complete sequence
          Length = 191765

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 182   gaaaatatgcacttgcactggaaatacagggaa 214
             ||||||||||||||||| |||||  ||||||||
Sbjct: 97462 gaaaatatgcacttgcattggaagcacagggaa 97430
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
              complete sequence
          Length = 177861

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 182    gaaaatatgcacttgcactggaaatacagggaa 214
              ||||||||||||||||| |||||  ||||||||
Sbjct: 153890 gaaaatatgcacttgcattggaagcacagggaa 153858
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>emb|AL359547.26| Human DNA sequence from clone RP11-715G15 on chromosome 6 Contains a
             novel gene and the 5' end of the C6orf103 gene for
             chromosome 6 open reading frame 103, complete sequence
          Length = 129245

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   ttggtagaagaggagtttttg 170
             |||||||||||||||||||||
Sbjct: 23936 ttggtagaagaggagtttttg 23956
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>gb|BC034912.1| Homo sapiens cDNA clone IMAGE:5272441
          Length = 2202

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 150  ttggtagaagaggagtttttg 170
            |||||||||||||||||||||
Sbjct: 1071 ttggtagaagaggagtttttg 1051
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 182      gaaaatatgcacttgcactggaaatacagggaa 214
                ||||||||||||||||| |||||  ||||||||
Sbjct: 27222494 gaaaatatgcacttgcattggaagcacagggaa 27222462
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>gb|AC079299.5| Homo sapiens BAC clone RP11-91N6 from 2, complete sequence
          Length = 21427

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 487   tcagctcagatccgaactggtccaa 511
             |||||||||||| ||||||||||||
Sbjct: 15447 tcagctcagatctgaactggtccaa 15423
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>dbj|AB059398.1| Bos taurus MyHC-2a mRNA for myosin heavy chain 2a, complete cds
          Length = 5965

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 383 ccaaggaatcttttgtcaaag 403
           |||||||||||||||||||||
Sbjct: 140 ccaaggaatcttttgtcaaag 160
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>dbj|AB012849.1| Bos taurus mRNA for type 2a myosin heavy chain, partial cds
          Length = 395

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 383 ccaaggaatcttttgtcaaag 403
           |||||||||||||||||||||
Sbjct: 214 ccaaggaatcttttgtcaaag 234
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>dbj|AB058896.1| Ovis aries OMyHC2a mRNA for myosin heavy chain 2a, partial cds
          Length = 315

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 383 ccaaggaatcttttgtcaaag 403
           |||||||||||||||||||||
Sbjct: 134 ccaaggaatcttttgtcaaag 154
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>gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome 16, complete sequence
          Length = 206814

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    caaagtcttttgcagatgtc 256
              ||||||||||||||||||||
Sbjct: 155565 caaagtcttttgcagatgtc 155584
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>ref|NM_133519.1| Rattus norvegicus interleukin 11 (Il11), mRNA
          Length = 1246

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gtcaagaggacagcgctatc 273
           ||||||||||||||||||||
Sbjct: 268 gtcaagaggacagcgctatc 249
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>gb|AF347935.1| Rattus norvegicus interleukin 11 precursor, mRNA, complete cds
          Length = 1246

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gtcaagaggacagcgctatc 273
           ||||||||||||||||||||
Sbjct: 268 gtcaagaggacagcgctatc 249
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>gb|DQ481663.1| Takifugu rubripes HoxAa gene cluster, complete sequence
          Length = 385816

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    tctatgctgagaccaaggaa 390
              ||||||||||||||||||||
Sbjct: 129310 tctatgctgagaccaaggaa 129329
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>emb|CT009638.5| Zebrafish DNA sequence from clone CH73-162A18 in linkage group 6,
             complete sequence
          Length = 101890

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   acagggaactggtgaaaata 226
             ||||||||||||||||||||
Sbjct: 41486 acagggaactggtgaaaata 41505
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>emb|Z69792.1|CEF40E10 Caenorhabditis elegans Cosmid F40E10, complete sequence
          Length = 27016

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   tcttttgcagatgtcaagag 261
             ||||||||||||||||||||
Sbjct: 18609 tcttttgcagatgtcaagag 18590
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>gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, complete sequence
          Length = 216490

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   tgcagatgtcaagaggacag 266
             ||||||||||||||||||||
Sbjct: 90761 tgcagatgtcaagaggacag 90742
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>emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on chromosome 1 Contains a
              processed pseudogene similar to ribosomal protein L31
              (RPL31), complete sequence
          Length = 200461

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    tacagagaatggaggccctg 451
              ||||||||||||||||||||
Sbjct: 173891 tacagagaatggaggccctg 173872
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>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1
          Length = 206606

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   atgcacttgcactggaaata 207
             ||||||||||||||||||||
Sbjct: 96392 atgcacttgcactggaaata 96373
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>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39
          Length = 197976

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   atgcacttgcactggaaata 207
             ||||||||||||||||||||
Sbjct: 41888 atgcacttgcactggaaata 41869
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>gb|AC108685.4| Homo sapiens X BAC RP11-323F16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178333

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    cagagaatggaggccctggg 453
              ||||||||||||||||||||
Sbjct: 109070 cagagaatggaggccctggg 109051
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>gb|AC157489.18| Medicago truncatula clone mth2-70e3, complete sequence
          Length = 154580

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                          
Query: 159    gaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactgg 218
              |||| ||||||||||| ||| | |||||||||||  | || ||||||||  ||||||| |
Sbjct: 138798 gaggggtttttgatgggacagtggaaaatatgcatcttcattggaaatatcgggaacttg 138857

                  
Query: 219    tgaa 222
              ||||
Sbjct: 138858 tgaa 138861
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>gb|AC106713.3| Homo sapiens X BAC RP11-770A12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125790

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   cagagaatggaggccctggg 453
             ||||||||||||||||||||
Sbjct: 71251 cagagaatggaggccctggg 71270
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>gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, complete sequence
          Length = 153823

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    ttagtttctgtggacaaggt 318
              ||||||||||||||||||||
Sbjct: 140953 ttagtttctgtggacaaggt 140972
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>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete
             sequence
          Length = 181697

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   caaagtcttttgcagatgtc 256
             ||||||||||||||||||||
Sbjct: 56423 caaagtcttttgcagatgtc 56442
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>ref|NM_078039.3| Caenorhabditis elegans F40E10.1 (metalloprotease) mRNA, complete
           cds
          Length = 1925

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 tcttttgcagatgtcaagag 261
           ||||||||||||||||||||
Sbjct: 925 tcttttgcagatgtcaagag 944
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>ref|XM_346531.2| PREDICTED: Rattus norvegicus hypothetical LOC360303 (LOC360303),
           mRNA
          Length = 1234

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gtcaagaggacagcgctatc 273
           ||||||||||||||||||||
Sbjct: 268 gtcaagaggacagcgctatc 249
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>gb|AC117831.6| Mus musculus chromosome 15, clone RP24-106E17, complete sequence
          Length = 173772

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 241    gtcttttgcagatgtcaagaggac 264
              ||||||||| ||||||||||||||
Sbjct: 127690 gtcttttgctgatgtcaagaggac 127667
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>gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.1018_N_14, complete sequence
          Length = 185116

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 1      ggaaaggatagcaaagnctgaag 23
              |||||||||||||||| ||||||
Sbjct: 140585 ggaaaggatagcaaagactgaag 140607
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>gb|U59223.1|PHU59223 Plexaura homomalla 8(R)-lipoxygenase mRNA, complete cds
          Length = 2401

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  aactggtgaaaatactggtg 232
            ||||||||||||||||||||
Sbjct: 1202 aactggtgaaaatactggtg 1183
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>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete
            sequence
          Length = 202365

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Minus

                                               
Query: 381  gaccaaggaatcttttgtcaaagagaaaggcttta 415
            ||||||||||||||||||  ||||||||| |||||
Sbjct: 7869 gaccaaggaatcttttgt--aagagaaagccttta 7837
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>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 241    gtcttttgcagatgtcaagaggac 264
              ||||||||| ||||||||||||||
Sbjct: 174114 gtcttttgctgatgtcaagaggac 174137
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>emb|AL672286.9| Mouse DNA sequence from clone RP23-48B17 on chromosome X, complete
             sequence
          Length = 209697

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 47    gccttgaagccaactgaagatacc 70
             |||||||| |||||||||||||||
Sbjct: 75279 gccttgaaaccaactgaagatacc 75256
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>emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chromosome X, complete
             sequence
          Length = 188627

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tttaaggatgaaggcatttt 143
             ||||||||||||||||||||
Sbjct: 17026 tttaaggatgaaggcatttt 17045
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>dbj|D85744.1|CELHCH1 Caenorhabditis elegans mRNA for HCH-1, complete cds
          Length = 2041

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  tcttttgcagatgtcaagag 261
            ||||||||||||||||||||
Sbjct: 1038 tcttttgcagatgtcaagag 1057


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,913,297
Number of Sequences: 3902068
Number of extensions: 4913297
Number of successful extensions: 83278
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 83102
Number of HSP's gapped (non-prelim): 173
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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