ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (... 32 1.5
2RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC... 31 1.9
3PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regu... 29 7.3
4PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regu... 29 7.3
5PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula... 29 9.5

>CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1)|
          Length = 980

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = +3

Query: 15  TLNLNGNDLSGRVPASLGGRPLHRVRFNFTDNARLC 122
           TL+L+ NDLSGRVP  LGG+ L     +F  N  LC
Sbjct: 580 TLDLSFNDLSGRVP--LGGQFLVFNETSFAGNTYLC 613



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>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   RHEETLNLNGNDLSGRVPASLG 68
           R  E+LNL GN LSG +PASLG
Sbjct: 163 RKLESLNLAGNFLSGTIPASLG 184



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>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 339 GKHHRPHESPRGGNNESSPH 398
           G  HRPHE P GG   SS H
Sbjct: 749 GGGHRPHEGPGGGMGNSSGH 768



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>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (MHC class
           I region proline-rich protein CAT53) (FB19 protein)
           (PP1-binding protein of 114 kDa) (p99)
          Length = 940

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 339 GKHHRPHESPRGGNNESSPH 398
           G  HRPHE P GG   SS H
Sbjct: 748 GGGHRPHEGPGGGMGNSSGH 767



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>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 336 MGKHHRPHESPRGGNNESSPH 398
           MG  HRPHE P GG    S H
Sbjct: 794 MGGGHRPHEGPGGGMGGGSGH 814


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,923,614
Number of Sequences: 219361
Number of extensions: 1732750
Number of successful extensions: 4006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4004
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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