Clone Information

BLAST Search Result

Clone Name	bags21n07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_478259.1\| Oryza sativa (japonica cultivar-group), mRNA	325	9e-86
2	dbj\|AK102299.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	325	9e-86
3	gb\|AY109766.1\| Zea mays CL1208_1 mRNA sequence	274	3e-70
4	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	153	7e-34
5	dbj\|AP003995.2\| Oryza sativa (japonica cultivar-group) genomic D...	153	7e-34
6	gb\|AC166493.6\| Mus musculus chromosome 1, clone RP24-317E14, com...	46	0.12
7	gb\|AC119176.10\| Mus musculus chromosome 1, clone RP24-359F24, co...	46	0.12
8	emb\|AL139140.11\| Human DNA sequence from clone RP5-1071P19 on ch...	44	0.47
9	gb\|AC112175.2\| Homo sapiens chromosome 5 clone CTD-2568P10, comp...	44	0.47
10	gb\|AC026688.7\| Homo sapiens chromosome 5 clone CTB-158E9, comple...	44	0.47
11	gb\|AC126013.12\| Medicago truncatula clone mth2-32e10, complete s...	42	1.8
12	gb\|AY484582.1\| Xenopus laevis reticulon 1-A (RTN1-A) mRNA, compl...	40	7.3
13	gb\|AC159209.2\| Mus musculus BAC clone RP23-100C6 from chromosome...	40	7.3
14	gb\|AC141476.3\| Mus musculus BAC clone RP24-170D4 from chromosome...	40	7.3
15	gb\|AC121846.3\| Mus musculus BAC clone RP24-83D6 from chromosome ...	40	7.3
16	gb\|AC122187.3\| Mus musculus BAC clone RP23-21P2 from 1, complete...	40	7.3
17	gb\|AC162940.4\| Mus musculus BAC clone RP23-95D3 from chromosome ...	40	7.3
18	emb\|AL512343.21\| Human DNA sequence from clone RP11-396C23 on ch...	40	7.3
19	emb\|AL354811.13\| Human DNA sequence from clone RP11-632L2 on chr...	40	7.3
20	emb\|AL158077.15\| Human DNA sequence from clone RP11-471J7 on chr...	40	7.3
21	emb\|CR352228.11\| Zebrafish DNA sequence from clone CH211-104F13 ...	40	7.3
22	gb\|AC103951.7\| Homo sapiens chromosome 18, clone RP11-117L4, com...	40	7.3
23	gb\|AC005341.13\| Homo sapiens chromosome , clone RP11-146P2, comp...	40	7.3
24	gb\|AC091138.6\| Homo sapiens chromosome 18, clone RP11-676J15, co...	40	7.3
25	gb\|AC061961.6\| Homo sapiens chromosome 2, clone RP11-754B23, com...	40	7.3
26	gb\|AC090614.5\| Homo sapiens chromosome 17, clone RP11-577I13, co...	40	7.3
27	gb\|AC154296.2\| Mus musculus BAC clone RP23-424C4 from chromosome...	40	7.3
28	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	7.3
29	emb\|BX323031.7\| Zebrafish DNA sequence from clone DKEYP-7B3 in l...	40	7.3
30	emb\|Z81550.1\|CEF55F3 Caenorhabditis elegans Cosmid F55F3, comple...	40	7.3
31	gb\|AC140308.2\| Mus musculus BAC clone RP23-424G15 from 1, comple...	40	7.3
32	gb\|AC156500.2\| Mus musculus BAC clone RP24-126J12 from chromosom...	40	7.3

>ref|XM_478259.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2449

 Score =  325 bits (164), Expect = 9e-86
 Identities = 332/388 (85%)
 Strand = Plus / Plus

                                                                        
Query: 17   actgaacctgaatggcaatgatctttcaggaagggttccagccagcctgggaggaagacc 76
            |||||| |||||||||||| ||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 1641 actgaatctgaatggcaattatctttctggaagggtaccagccagccttggaggaagacc 1700

                                                                        
Query: 77   tttacacagagttagattcaactttacggacaatgctaggctgtgtggaattcctggttt 136
            | ||||||||| |||||| ||||| |||||||||||| | || ||||||||||| |||||
Sbjct: 1701 tctacacagagctagatttaacttcacggacaatgctggactttgtggaattcccggttt 1760

                                                                        
Query: 137  acgtgagtgtggccctcatttatctgtagctgcaaaaatcggcatggctttcggggtact 196
            || ||| || ||||| ||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 1761 acatgaatgcggcccgcatttatctgtggctgcaaagattggtatggcttttggggtact 1820

                                                                        
Query: 197  tgtagcttttctgtttctagttgtattttcggcatgctggtggaaaaggaggcaaaacat 256
             |||||| | || ||||||||||||||| |||||||||||||||| || || || |||||
Sbjct: 1821 ggtagctatcctatttctagttgtatttgcggcatgctggtggaagagaagacagaacat 1880

                                                                        
Query: 257  tatccgtggtcagaaattagctgcagcaagggaagctccctatgctaaatcaaggaccca 316
            |  |||||  ||||||||||||||||||||||||||||| ||||| || ||  | || ||
Sbjct: 1881 tcgccgtgcgcagaaattagctgcagcaagggaagctccttatgcaaagtctcgaacaca 1940

                                                                        
Query: 317  gtttacacgggatgtgcaaatgggcaagcaccaccgcccgcatgaaagcccacggggtgg 376
             |||||||||||  |||||||||  ||||| |||||||| ||||||||| | ||| | ||
Sbjct: 1941 atttacacgggacatgcaaatggcgaagcatcaccgcccacatgaaagctctcggagcgg 2000

                                        
Query: 377  caacaatgaaagctcgccacatttgctt 404
            |||| |||||||| | ||||||||||||
Sbjct: 2001 caacgatgaaagcactccacatttgctt 2028



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                        
Query: 457  tgctcagttaatgctggtgtcagcttgagttgtaaaacaa-ttatacatactaggtca-g 514
            ||||||||| || ||| | |||| |||||||| ||||||| || |||||||||||||| |
Sbjct: 2067 tgctcagttgattctgctatcaggttgagttgcaaaacaaattgtacatactaggtcatg 2126

                       
Query: 515  gatggtgtata 525
             ||||||||||
Sbjct: 2127 tatggtgtata 2137

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>dbj|AK102299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089L20, full
            insert sequence
          Length = 2450

 Score =  325 bits (164), Expect = 9e-86
 Identities = 332/388 (85%)
 Strand = Plus / Plus

                                                                        
Query: 17   actgaacctgaatggcaatgatctttcaggaagggttccagccagcctgggaggaagacc 76
            |||||| |||||||||||| ||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 1641 actgaatctgaatggcaattatctttctggaagggtaccagccagccttggaggaagacc 1700

                                                                        
Query: 77   tttacacagagttagattcaactttacggacaatgctaggctgtgtggaattcctggttt 136
            | ||||||||| |||||| ||||| |||||||||||| | || ||||||||||| |||||
Sbjct: 1701 tctacacagagctagatttaacttcacggacaatgctggactttgtggaattcccggttt 1760

                                                                        
Query: 137  acgtgagtgtggccctcatttatctgtagctgcaaaaatcggcatggctttcggggtact 196
            || ||| || ||||| ||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 1761 acatgaatgcggcccgcatttatctgtggctgcaaagattggtatggcttttggggtact 1820

                                                                        
Query: 197  tgtagcttttctgtttctagttgtattttcggcatgctggtggaaaaggaggcaaaacat 256
             |||||| | || ||||||||||||||| |||||||||||||||| || || || |||||
Sbjct: 1821 ggtagctatcctatttctagttgtatttgcggcatgctggtggaagagaagacagaacat 1880

                                                                        
Query: 257  tatccgtggtcagaaattagctgcagcaagggaagctccctatgctaaatcaaggaccca 316
            |  |||||  ||||||||||||||||||||||||||||| ||||| || ||  | || ||
Sbjct: 1881 tcgccgtgcgcagaaattagctgcagcaagggaagctccttatgcaaagtctcgaacaca 1940

                                                                        
Query: 317  gtttacacgggatgtgcaaatgggcaagcaccaccgcccgcatgaaagcccacggggtgg 376
             |||||||||||  |||||||||  ||||| |||||||| ||||||||| | ||| | ||
Sbjct: 1941 atttacacgggacatgcaaatggcgaagcatcaccgcccacatgaaagctctcggagcgg 2000

                                        
Query: 377  caacaatgaaagctcgccacatttgctt 404
            |||| |||||||| | ||||||||||||
Sbjct: 2001 caacgatgaaagcactccacatttgctt 2028



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                        
Query: 457  tgctcagttaatgctggtgtcagcttgagttgtaaaacaa-ttatacatactaggtca-g 514
            ||||||||| || ||| | |||| |||||||| ||||||| || |||||||||||||| |
Sbjct: 2067 tgctcagttgattctgctatcaggttgagttgcaaaacaaattgtacatactaggtcatg 2126

                       
Query: 515  gatggtgtata 525
             ||||||||||
Sbjct: 2127 tatggtgtata 2137

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>gb|AY109766.1| Zea mays CL1208_1 mRNA sequence
          Length = 3968

 Score =  274 bits (138), Expect = 3e-70
 Identities = 330/394 (83%)
 Strand = Plus / Minus

                                                                       
Query: 17  actgaacctgaatggcaatgatctttcaggaagggttccagccagcctgggaggaagacc 76
           |||||||||||||||||||  |||||| ||  | |||||||||||  |||||||||| ||
Sbjct: 594 actgaacctgaatggcaatcgtctttctggtcgtgttccagccagtttgggaggaaggcc 535

                                                                       
Query: 77  tttacacagagttagattcaactttacggacaatgctaggctgtgtggaattcctggttt 136
           | | ||||||| |||||| ||||| |||||||||||  | || |||||||| ||||| ||
Sbjct: 534 tctgcacagagctagatttaacttcacggacaatgccggactatgtggaatacctgggtt 475

                                                                       
Query: 137 acgtgagtgtggccctcatttatctgtagctgcaaaaatcggcatggctttcggggtact 196
           ||||||||||||||||||| |||| || |||||||| ||||||||||||||||| || ||
Sbjct: 474 acgtgagtgtggccctcatctatccgtggctgcaaagatcggcatggctttcggcgtgct 415

                                                                       
Query: 197 tgtagcttttctgtttctagttgtattttcggcatgctggtggaaaaggaggcaaaacat 256
           | ||||| |||| || |||||||||||  | || ||||||||||| ||  | || |||||
Sbjct: 414 tttagctattctattcctagttgtattcgctgcgtgctggtggaagagacgccagaacat 355

                                                                       
Query: 257 tatccgtggtcagaaattagctgcagcaagggaagctccctatgctaaatcaaggaccca 316
           | |||||| | | | |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 354 tctccgtgctaaaagattagctgcagcaagggaagctccttatgcaaaatcaaggaccca 295

                                                                       
Query: 317 gtttacacgggatgtgcaaatgggcaagcaccaccgcccgcatgaaagcccacggggtgg 376
           ||| || || ||||||||||||| |||||| || ||  | |||||||   | ||| |  |
Sbjct: 294 gttcacccgcgatgtgcaaatggccaagcatcaacggacacatgaaaatgctcggagcag 235

                                             
Query: 377 caacaatgaaagctcgccacatttgctttcctag 410
           ||||| |||| |||||||||||||||||||||||
Sbjct: 234 caacagtgaaggctcgccacatttgctttcctag 201

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  153 bits (77), Expect = 7e-34
 Identities = 155/181 (85%)
 Strand = Plus / Minus

                                                                            
Query: 102      acggacaatgctaggctgtgtggaattcctggtttacgtgagtgtggccctcatttatct 161
                |||||||||||| | || ||||||||||| ||||||| ||| || ||||| |||||||||
Sbjct: 18862197 acggacaatgctggactttgtggaattcccggtttacatgaatgcggcccgcatttatct 18862138

                                                                            
Query: 162      gtagctgcaaaaatcggcatggctttcggggtacttgtagcttttctgtttctagttgta 221
                || |||||||| || || |||||||| |||||||| |||||| | || ||||||||||||
Sbjct: 18862137 gtggctgcaaagattggtatggcttttggggtactggtagctatcctatttctagttgta 18862078

                                                                            
Query: 222      ttttcggcatgctggtggaaaaggaggcaaaacattatccgtggtcagaaattagctgca 281
                ||| |||||||||||||||| || || || ||||||  |||||  |||||||||||||||
Sbjct: 18862077 tttgcggcatgctggtggaagagaagacagaacattcgccgtgcgcagaaattagctgca 18862018

                 
Query: 282      g 282
                |
Sbjct: 18862017 g 18862017



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                            
Query: 24       ctgaatggcaatgatctttcaggaagggttccagccagcctgggaggaagacctttacac 83
                |||||||||||| ||||||| |||||||| ||||||||||| |||||||||||| |||||
Sbjct: 18862451 ctgaatggcaattatctttctggaagggtaccagccagccttggaggaagacctctacac 18862392

                           
Query: 84       agagttagatt 94
                |||| ||||||
Sbjct: 18862391 agagctagatt 18862381



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                            
Query: 277      ctgcagcaagggaagctccctatgctaaatcaaggacccagtttacacgggatgtgcaaa 336
                ||||||||||||||||||| ||||| || ||  | || || |||||||||||  ||||||
Sbjct: 18861923 ctgcagcaagggaagctccttatgcaaagtctcgaacacaatttacacgggacatgcaaa 18861864

                                                                            
Query: 337      tgggcaagcaccaccgcccgcatgaaagcccacggggtggcaacaatgaaagctcgccac 396
                |||  ||||| |||||||| ||||||||| | ||| | |||||| |||||||| | ||||
Sbjct: 18861863 tggcgaagcatcaccgcccacatgaaagctctcggagcggcaacgatgaaagcactccac 18861804

                        
Query: 397      atttgctt 404
                ||||||||
Sbjct: 18861803 atttgctt 18861796



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                            
Query: 457      tgctcagttaatgctggtgtcagcttgagttgtaaaacaa-ttatacatactaggtca-g 514
                ||||||||| || ||| | |||| |||||||| ||||||| || |||||||||||||| |
Sbjct: 18861757 tgctcagttgattctgctatcaggttgagttgcaaaacaaattgtacatactaggtcatg 18861698

                           
Query: 515      gatggtgtata 525
                 ||||||||||
Sbjct: 18861697 tatggtgtata 18861687

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>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1112_F06
          Length = 104419

 Score =  153 bits (77), Expect = 7e-34
 Identities = 155/181 (85%)
 Strand = Plus / Minus

                                                                         
Query: 102   acggacaatgctaggctgtgtggaattcctggtttacgtgagtgtggccctcatttatct 161
             |||||||||||| | || ||||||||||| ||||||| ||| || ||||| |||||||||
Sbjct: 62383 acggacaatgctggactttgtggaattcccggtttacatgaatgcggcccgcatttatct 62324

                                                                         
Query: 162   gtagctgcaaaaatcggcatggctttcggggtacttgtagcttttctgtttctagttgta 221
             || |||||||| || || |||||||| |||||||| |||||| | || ||||||||||||
Sbjct: 62323 gtggctgcaaagattggtatggcttttggggtactggtagctatcctatttctagttgta 62264

                                                                         
Query: 222   ttttcggcatgctggtggaaaaggaggcaaaacattatccgtggtcagaaattagctgca 281
             ||| |||||||||||||||| || || || ||||||  |||||  |||||||||||||||
Sbjct: 62263 tttgcggcatgctggtggaagagaagacagaacattcgccgtgcgcagaaattagctgca 62204

              
Query: 282   g 282
             |
Sbjct: 62203 g 62203



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                         
Query: 24    ctgaatggcaatgatctttcaggaagggttccagccagcctgggaggaagacctttacac 83
             |||||||||||| ||||||| |||||||| ||||||||||| |||||||||||| |||||
Sbjct: 62637 ctgaatggcaattatctttctggaagggtaccagccagccttggaggaagacctctacac 62578

                        
Query: 84    agagttagatt 94
             |||| ||||||
Sbjct: 62577 agagctagatt 62567



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                         
Query: 277   ctgcagcaagggaagctccctatgctaaatcaaggacccagtttacacgggatgtgcaaa 336
             ||||||||||||||||||| ||||| || ||  | || || |||||||||||  ||||||
Sbjct: 62109 ctgcagcaagggaagctccttatgcaaagtctcgaacacaatttacacgggacatgcaaa 62050

                                                                         
Query: 337   tgggcaagcaccaccgcccgcatgaaagcccacggggtggcaacaatgaaagctcgccac 396
             |||  ||||| |||||||| ||||||||| | ||| | |||||| |||||||| | ||||
Sbjct: 62049 tggcgaagcatcaccgcccacatgaaagctctcggagcggcaacgatgaaagcactccac 61990

                     
Query: 397   atttgctt 404
             ||||||||
Sbjct: 61989 atttgctt 61982



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                         
Query: 457   tgctcagttaatgctggtgtcagcttgagttgtaaaacaa-ttatacatactaggtca-g 514
             ||||||||| || ||| | |||| |||||||| ||||||| || |||||||||||||| |
Sbjct: 61943 tgctcagttgattctgctatcaggttgagttgcaaaacaaattgtacatactaggtcatg 61884

                        
Query: 515   gatggtgtata 525
              ||||||||||
Sbjct: 61883 tatggtgtata 61873

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>gb|AC166493.6| Mus musculus chromosome 1, clone RP24-317E14, complete sequence
          Length = 178538

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 44     aggaagggttccagccagcctgggagg 70
              ||||| |||||||||||||||||||||
Sbjct: 102557 aggaaaggttccagccagcctgggagg 102531

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>gb|AC119176.10| Mus musculus chromosome 1, clone RP24-359F24, complete sequence
          Length = 208009

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 44     aggaagggttccagccagcctgggagg 70
              ||||| |||||||||||||||||||||
Sbjct: 159136 aggaaaggttccagccagcctgggagg 159162

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>emb|AL139140.11| Human DNA sequence from clone RP5-1071P19 on chromosome 1p34.1-34.3
             Contains part of the CSMD2 gene for CUB and Sushi multiple
             domains 2, complete sequence
          Length = 78229

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 456   atgctcagttaatgctggtgtc 477
             ||||||||||||||||||||||
Sbjct: 64655 atgctcagttaatgctggtgtc 64676

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>gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, complete sequence
          Length = 142712

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 54    ccagccagcctgggaggaagaccttt 79
             |||| |||||||||||||||||||||
Sbjct: 99697 ccaggcagcctgggaggaagaccttt 99722

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>gb|AC026688.7| Homo sapiens chromosome 5 clone CTB-158E9, complete sequence
          Length = 134778

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 54     ccagccagcctgggaggaagaccttt 79
              |||| |||||||||||||||||||||
Sbjct: 122488 ccaggcagcctgggaggaagaccttt 122463

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>gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete sequence
          Length = 116778

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   ttttctgtttctagttgtatt 223
             |||||||||||||||||||||
Sbjct: 42410 ttttctgtttctagttgtatt 42430

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>gb|AY484582.1| Xenopus laevis reticulon 1-A (RTN1-A) mRNA, complete cds
          Length = 2469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttcggcacgaggagacactg 20
          ||||||||||||||||||||
Sbjct: 3  ttcggcacgaggagacactg 22

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>gb|AC159209.2| Mus musculus BAC clone RP23-100C6 from chromosome 13, complete sequence
          Length = 212761

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 140    tgagtgtggccctcatttatctgt 163
              ||||||||||||||||||| ||||
Sbjct: 143082 tgagtgtggccctcatttacctgt 143059

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>gb|AC141476.3| Mus musculus BAC clone RP24-170D4 from chromosome 13, complete sequence
          Length = 146228

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 140   tgagtgtggccctcatttatctgt 163
             ||||||||||||||||||| ||||
Sbjct: 49069 tgagtgtggccctcatttacctgt 49046

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>gb|AC121846.3| Mus musculus BAC clone RP24-83D6 from chromosome 15, complete sequence
          Length = 182309

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   tggaaaaggaggcaaaacat 256
             ||||||||||||||||||||
Sbjct: 36355 tggaaaaggaggcaaaacat 36374

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>gb|AC122187.3| Mus musculus BAC clone RP23-21P2 from 1, complete sequence
          Length = 252095

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gtacttgtagcttttctgtt 211
              ||||||||||||||||||||
Sbjct: 107788 gtacttgtagcttttctgtt 107769

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>gb|AC162940.4| Mus musculus BAC clone RP23-95D3 from chromosome 13, complete sequence
          Length = 218228

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 140    tgagtgtggccctcatttatctgt 163
              ||||||||||||||||||| ||||
Sbjct: 199075 tgagtgtggccctcatttacctgt 199098

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>emb|AL512343.21| Human DNA sequence from clone RP11-396C23 on chromosome 1 Contains the
             H3F3A gene for H3 histone, family 3A, a nove gene and four
             CpG islands, complete sequence
          Length = 105087

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tctgtttctagttgtatttt 225
             ||||||||||||||||||||
Sbjct: 56688 tctgtttctagttgtatttt 56669

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>emb|AL354811.13| Human DNA sequence from clone RP11-632L2 on chromosome 13 Contains a
              novel gene, the 5' end of the GPC6 gene for glypican 6 and
              a CpG island, complete sequence
          Length = 181567

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     cctgaatggcaatgatcttt 42
              ||||||||||||||||||||
Sbjct: 124019 cctgaatggcaatgatcttt 124000

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>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the
             5' end of the SLC24A2 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
             a CpG island, complete sequence
          Length = 159900

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   ttttctgtttctagttgtat 222
             ||||||||||||||||||||
Sbjct: 45634 ttttctgtttctagttgtat 45653

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>emb|CR352228.11| Zebrafish DNA sequence from clone CH211-104F13 in linkage group 23,
              complete sequence
          Length = 175139

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 35     tgatctttcaggaagggttccagc 58
              ||||||||||| ||||||||||||
Sbjct: 130932 tgatctttcagtaagggttccagc 130909

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>gb|AC103951.7| Homo sapiens chromosome 18, clone RP11-117L4, complete sequence
          Length = 168800

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 489    taaaacaattatacatacta 508
              ||||||||||||||||||||
Sbjct: 120714 taaaacaattatacatacta 120695

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>gb|AC005341.13| Homo sapiens chromosome , clone RP11-146P2, complete sequence
          Length = 161449

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    gcctgggaggaagacctttacaca 84
             |||| |||||||||||||||||||
Sbjct: 25006 gcctcggaggaagacctttacaca 25029

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>gb|AC091138.6| Homo sapiens chromosome 18, clone RP11-676J15, complete sequence
          Length = 207520

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 489    taaaacaattatacatacta 508
              ||||||||||||||||||||
Sbjct: 178474 taaaacaattatacatacta 178493

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>gb|AC061961.6| Homo sapiens chromosome 2, clone RP11-754B23, complete sequence
          Length = 91734

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   gttgtaaaacaattatacat 504
             ||||||||||||||||||||
Sbjct: 69431 gttgtaaaacaattatacat 69412

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>gb|AC090614.5| Homo sapiens chromosome 17, clone RP11-577I13, complete sequence
          Length = 230956

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     gcctgggaggaagacctttacaca 84
              |||| |||||||||||||||||||
Sbjct: 177557 gcctcggaggaagacctttacaca 177580

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>gb|AC154296.2| Mus musculus BAC clone RP23-424C4 from chromosome 9, complete
            sequence
          Length = 194303

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 462  agttaatgctggtgtcagct 481
            ||||||||||||||||||||
Sbjct: 7336 agttaatgctggtgtcagct 7355

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     atggcaatgatctttcagga 47
              ||||||||||||||||||||
Sbjct: 321747 atggcaatgatctttcagga 321766

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>emb|BX323031.7| Zebrafish DNA sequence from clone DKEYP-7B3 in linkage group 18, complete
              sequence
          Length = 164748

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aggagacactgaacctgaat 29
              ||||||||||||||||||||
Sbjct: 154100 aggagacactgaacctgaat 154081

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>emb|Z81550.1|CEF55F3 Caenorhabditis elegans Cosmid F55F3, complete sequence
          Length = 42521

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   tggtggaaaaggaggcaaaa 253
             ||||||||||||||||||||
Sbjct: 30480 tggtggaaaaggaggcaaaa 30461

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>gb|AC140308.2| Mus musculus BAC clone RP23-424G15 from 1, complete sequence
          Length = 207633

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gtacttgtagcttttctgtt 211
              ||||||||||||||||||||
Sbjct: 174182 gtacttgtagcttttctgtt 174163

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>gb|AC156500.2| Mus musculus BAC clone RP24-126J12 from chromosome 9, complete sequence
          Length = 152842

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   agttaatgctggtgtcagct 481
             ||||||||||||||||||||
Sbjct: 35224 agttaatgctggtgtcagct 35205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,874,421
Number of Sequences: 3902068
Number of extensions: 4874421
Number of successful extensions: 90341
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90221
Number of HSP's gapped (non-prelim): 116
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result