ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104347.1| Zea mays PCO063865 mRNA sequence Length = 920 Score = 137 bits (69), Expect = 4e-29 Identities = 126/145 (86%) Strand = Plus / Plus Query: 259 gaggacgaccggatgatgaccaccggcctgcacaccgtccgcgacatcttctgcgtcgca 318 ||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct: 476 gaggaggaccggatgatgacgacgggcctgcacaccgtgtgcgacatcttctgcgtcgcc 535 Query: 319 tgcggagccatcctcggctggaaatacgtctctgcgtttgagaaggaccagaggtataag 378 ||||||||||| ||||||||||||||| || || || || ||| ||||||||| ||| Sbjct: 536 tgcggagccatactcggctggaaatacctcgtcgccttcgacaagagccagaggtacaag 595 Query: 379 gagggcaagttcatcctcgagaggt 403 || ||||||||||||||||| |||| Sbjct: 596 gaaggcaagttcatcctcgacaggt 620 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 24 gttccgctgcaagcacggcaaggcctacctcttc 57 ||||||||||||| |||||||||||||||||||| Sbjct: 409 gttccgctgcaagaacggcaaggcctacctcttc 442
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 31 tgcaagcacggcaaggcctacctcttcgacaaggtgtaagt 71 ||||||||||| ||||| ||||||||| | ||||||||||| Sbjct: 27707011 tgcaagcacgggaaggcgtacctcttcaataaggtgtaagt 27707051
>ref|XM_752685.1| Ustilago maydis 521 hypothetical protein (UM01631.1) partial mRNA Length = 756 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 376 aaggagggcaagttcatcctcgaga 400 ||||||||||||||||||||||||| Sbjct: 706 aaggagggcaagttcatcctcgaga 730
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 31 tgcaagcacggcaaggcctacctcttcgacaaggtgtaagt 71 ||||||||||| ||||| ||||||||| | ||||||||||| Sbjct: 27798334 tgcaagcacgggaaggcgtacctcttcaataaggtgtaagt 27798374
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 31 tgcaagcacggcaaggcctacctcttcgacaaggtgtaagt 71 ||||||||||| ||||| ||||||||| | ||||||||||| Sbjct: 106883 tgcaagcacgggaaggcgtacctcttcaataaggtgtaagt 106843
>dbj|AK121032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050J15, full insert sequence Length = 3552 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 31 tgcaagcacggcaaggcctacctcttcgacaaggtgtaagt 71 ||||||||||| ||||| ||||||||| | ||||||||||| Sbjct: 557 tgcaagcacgggaaggcgtacctcttcaataaggtgtaagt 597
>gb|AY109711.1| Zea mays CL20422_1 mRNA sequence Length = 1032 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 31 tgcaagcacggcaaggcctacctcttc 57 ||||||||||||||||| ||||||||| Sbjct: 675 tgcaagcacggcaaggcgtacctcttc 649
>gb|AC091293.2| Takifugu rubripes clone 283N9, complete sequence Length = 147908 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 366 ccagaggtataaggagggcaagttcatcctcgag 399 ||||| |||||| ||||||||||||||| ||||| Sbjct: 74454 ccagaagtataaagagggcaagttcatcatcgag 74487
>gb|AC091292.2| Takifugu rubripes clone 263O5, complete sequence Length = 103019 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 366 ccagaggtataaggagggcaagttcatcctcgag 399 ||||| |||||| ||||||||||||||| ||||| Sbjct: 68870 ccagaagtataaagagggcaagttcatcatcgag 68903
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 ccatcgccatgcccaccatgcc 96 |||||||||||||||||||||| Sbjct: 87135 ccatcgccatgcccaccatgcc 87156
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 caagacaatgcaggatcaagttgatt 541 ||||||||||||||||||| |||||| Sbjct: 341901 caagacaatgcaggatcaacttgatt 341876
>ref|XM_309944.2| Anopheles gambiae str. PEST ENSANGP00000019801 (ENSANGG00000017312), mRNA Length = 621 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 366 ccagaggtataaggagggcaagttcatcctcgag 399 ||||| ||||||||||||||||| |||| ||||| Sbjct: 445 ccagaagtataaggagggcaagtacatcatcgag 478
>ref|NM_208749.1| Eremothecium gossypii ACL008Cp (ACL008C), mRNA Length = 2199 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 caagacaatgcaggatcaagttgatt 541 ||||||||||||||||||| |||||| Sbjct: 1455 caagacaatgcaggatcaacttgatt 1480
>gb|AC155249.2| Mus musculus BAC clone RP24-254A5 from chromosome 9, complete sequence Length = 191932 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 gcaggatcaagttgattaggc 545 ||||||||||||||||||||| Sbjct: 145803 gcaggatcaagttgattaggc 145823
>ref|NM_021056.1| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 3, mRNA Length = 5411 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ctctgctctctgctccatgct 154 ||||||||||||||||||||| Sbjct: 2220 ctctgctctctgctccatgct 2240
>ref|NM_000548.2| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 1, mRNA Length = 5543 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ctctgctctctgctccatgct 154 ||||||||||||||||||||| Sbjct: 2220 ctctgctctctgctccatgct 2240
>ref|NM_021055.1| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 2, mRNA Length = 5414 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ctctgctctctgctccatgct 154 ||||||||||||||||||||| Sbjct: 2220 ctctgctctctgctccatgct 2240
>ref|XM_816405.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510187.370) partial mRNA Length = 897 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 cgcatccagctgtgggccgag 459 ||||||||||||||||||||| Sbjct: 565 cgcatccagctgtgggccgag 585
>emb|BX647816.1|HSM807962 Homo sapiens mRNA; cDNA DKFZp686N1252 (from clone DKFZp686N1252) Length = 5107 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ctctgctctctgctccatgct 154 ||||||||||||||||||||| Sbjct: 1891 ctctgctctctgctccatgct 1911
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gctgctgctgctgcgttatca 224 ||||||||||||||||||||| Sbjct: 853021 gctgctgctgctgcgttatca 853041
>dbj|AB210000.1| Homo sapiens mRNA for SLC9A3R2 variant protein, partial cds, clone: eh00696 Length = 5421 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ctctgctctctgctccatgct 154 ||||||||||||||||||||| Sbjct: 2308 ctctgctctctgctccatgct 2328
>gb|AC156270.5| Mus musculus 10 BAC RP24-289H6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163328 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 gacctcacctctgctctctgctcca 150 ||||||| ||||||||||||||||| Sbjct: 65445 gacctcaactctgctctctgctcca 65421
>gb|AC155259.1| Mus musculus BAC clone RP24-70C15 from 9, complete sequence Length = 222729 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 gcaggatcaagttgattaggc 545 ||||||||||||||||||||| Sbjct: 7879 gcaggatcaagttgattaggc 7899
>emb|X75621.1|HSTSC2 Homo sapiens TSC2 mRNA for tuberin Length = 5543 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ctctgctctctgctccatgct 154 ||||||||||||||||||||| Sbjct: 2220 ctctgctctctgctccatgct 2240
>gb|AY860110.1| Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence Length = 11188 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 cgaggacgacgaccagggcg 502 |||||||||||||||||||| Sbjct: 7247 cgaggacgacgaccagggcg 7266
>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence Length = 193483 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tgctctgtttcatttcattt 170 |||||||||||||||||||| Sbjct: 167966 tgctctgtttcatttcattt 167947
>ref|XM_369748.1| Magnaporthe grisea 70-15 hypothetical protein (MG06263.4) partial mRNA Length = 519 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 aaggagggcaagttcatcctcgag 399 ||||||||||||||||| |||||| Sbjct: 469 aaggagggcaagttcatactcgag 492
>gb|BC067578.1| Danio rerio yippee-like 3, mRNA (cDNA clone MGC:85687 IMAGE:6961617), complete cds Length = 1411 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ccagaggtataaggagggcaagtt 389 ||||| |||||||||||||||||| Sbjct: 334 ccagaagtataaggagggcaagtt 357
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 aggagggcaagttcatcctc 396 |||||||||||||||||||| Sbjct: 1630639 aggagggcaagttcatcctc 1630658
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 atcctcgagaggtgcaagat 410 |||||||||||||||||||| Sbjct: 1270059 atcctcgagaggtgcaagat 1270078
>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence Length = 190295 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 gagaggtgcaagatccactc 416 |||||||||||||||||||| Sbjct: 79305 gagaggtgcaagatccactc 79324
>gb|AC123809.3| Mus musculus BAC clone RP24-174M12 from chromosome 10, complete sequence Length = 157123 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 acctctgctctctgctccat 151 |||||||||||||||||||| Sbjct: 39009 acctctgctctctgctccat 38990
>emb|BX037353.1|CNS090ZH Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA9DB10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 914 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 aggacgaccggatgatgacc 279 |||||||||||||||||||| Sbjct: 223 aggacgaccggatgatgacc 204
>emb|AL645804.8| Zebrafish DNA sequence from clone BUSM1-25N23 Contains the 3' part of a novel gene similar to CBL (Cas-Br-M (murine) ecotropic retroviral transforming sequence), the 3' part of the alcam gene for activated leukocyte cell adhesion molecule and a putative novel gene, complete sequence Length = 119087 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 atccaccatcgacctcacct 135 |||||||||||||||||||| Sbjct: 34706 atccaccatcgacctcacct 34725
>emb|CR450749.7| Zebrafish DNA sequence from clone DKEY-2J6 in linkage group 5, complete sequence Length = 142889 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tatccaccatcgacctcacc 134 |||||||||||||||||||| Sbjct: 6489 tatccaccatcgacctcacc 6470
>gb|AC027322.4| Homo sapiens chromosome 5 clone CTD-2027G10, complete sequence Length = 156248 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ctgctccatgctctgtttca 162 |||||||||||||||||||| Sbjct: 90807 ctgctccatgctctgtttca 90788
>ref|XM_684674.1| PREDICTED: Danio rerio similar to SI:dZ125J23.11 (Gypsy polyprotein) (LOC561271), mRNA Length = 2817 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tatccaccatcgacctcacc 134 |||||||||||||||||||| Sbjct: 1706 tatccaccatcgacctcacc 1725
>ref|XM_683953.1| PREDICTED: Danio rerio similar to SI:dZ125J23.11 (Gypsy polyprotein) (LOC560554), mRNA Length = 2754 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tatccaccatcgacctcacc 134 |||||||||||||||||||| Sbjct: 1622 tatccaccatcgacctcacc 1641
>ref|NM_012680.2| Rattus norvegicus tuberous sclerosis 2 (Tsc2), mRNA Length = 5654 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tctgctctctgctccatgct 154 |||||||||||||||||||| Sbjct: 2286 tctgctctctgctccatgct 2305
>ref|XM_679041.1| PREDICTED: Danio rerio similar to Cas-Br-M (murine) ecotropic retroviral transforming sequence b (LOC556277), mRNA Length = 2802 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 atccaccatcgacctcacct 135 |||||||||||||||||||| Sbjct: 363 atccaccatcgacctcacct 382
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222553 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acctctgctctctgctccat 151 |||||||||||||||||||| Sbjct: 4166 acctctgctctctgctccat 4185
>gb|AC026693.5| Homo sapiens chromosome 5 clone CTC-261E10, complete sequence Length = 92250 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ctgctccatgctctgtttca 162 |||||||||||||||||||| Sbjct: 91608 ctgctccatgctctgtttca 91627
>emb|CR407145.1| Gallus gallus finished cDNA, clone ChEST743b20 Length = 1157 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 aacacggctgctgctgctgc 217 |||||||||||||||||||| Sbjct: 1089 aacacggctgctgctgctgc 1108
>gb|AF402606.1|AF402606 Phaseolus vulgaris homeodomain leucine zipper protein HDZ3 mRNA, partial cds Length = 966 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 ctgctgctgctgcgttatcattcattca 232 ||||||||||||| |||||||| ||||| Sbjct: 696 ctgctgctgctgcattatcatttattca 669
>emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in linkage group 3, complete sequence Length = 171843 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 ccagaggtataaggagggcaagtt 389 ||||| |||||||||||||||||| Sbjct: 67501 ccagaagtataaggagggcaagtt 67478
>emb|BX255960.14| Zebrafish DNA sequence from clone DKEY-265E17 in linkage group 23, complete sequence Length = 172219 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctctgtttcatttcatttac 172 |||||||||||||||||||| Sbjct: 165178 ctctgtttcatttcatttac 165159
>emb|AL844563.15| Zebrafish DNA sequence from clone DKEY-5O10 in linkage group 7, complete sequence Length = 227750 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tatccaccatcgacctcacc 134 |||||||||||||||||||| Sbjct: 119272 tatccaccatcgacctcacc 119253
>gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone BACR23O04, complete sequence Length = 160817 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tgctctgtttcatttcattt 170 |||||||||||||||||||| Sbjct: 141587 tgctctgtttcatttcattt 141606
>gb|AE004647.1| Pseudomonas aeruginosa PAO1, section 208 of 529 of the complete genome Length = 10936 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tccatcgccatgcccaccat 93 |||||||||||||||||||| Sbjct: 6248 tccatcgccatgcccaccat 6267
>emb|BX640578.3| Mouse DNA sequence from clone RP23-261L3 on chromosome 2, complete sequence Length = 152285 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 aaggaccagaggtataagga 380 |||||||||||||||||||| Sbjct: 50434 aaggaccagaggtataagga 50415
>emb|BX005366.18| Zebrafish DNA sequence from clone DKEY-222J15 in linkage group 1, complete sequence Length = 162076 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 atccaccatcgacctcacct 135 |||||||||||||||||||| Sbjct: 48656 atccaccatcgacctcacct 48675
>gb|AC007786.1|AC007786 Homo sapiens chromosome 19, BAC 41855 (CIT-B-32o4), complete sequence Length = 229061 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cctctgctctctgctccatg 152 |||||||||||||||||||| Sbjct: 188792 cctctgctctctgctccatg 188773
>gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22 of 118 of the complete sequence Length = 214323 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tgctctgtttcatttcattt 170 |||||||||||||||||||| Sbjct: 161310 tgctctgtttcatttcattt 161329
>ref|NM_212790.1| Danio rerio yippee-like 3 (ypel3), mRNA Length = 1411 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ccagaggtataaggagggcaagtt 389 ||||| |||||||||||||||||| Sbjct: 334 ccagaagtataaggagggcaagtt 357
>gb|AY185349.1| Danio rerio Ypel1 mRNA, complete cds Length = 728 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ccagaggtataaggagggcaagtt 389 ||||| |||||||||||||||||| Sbjct: 562 ccagaagtataaggagggcaagtt 585
>gb|U24150.1|RNU24150 Rattus norvegicus tuberous sclerosis 2 homolog mRNA, complete cds Length = 5654 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tctgctctctgctccatgct 154 |||||||||||||||||||| Sbjct: 2286 tctgctctctgctccatgct 2305
>emb|AL772305.15| Mouse DNA sequence from clone RP23-86E8 on chromosome 4, complete sequence Length = 260935 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cccaccatgcctcaatcttg 105 |||||||||||||||||||| Sbjct: 162753 cccaccatgcctcaatcttg 162734
>gb|BC050961.1| Danio rerio yippee-like 3, mRNA (cDNA clone IMAGE:6034433) Length = 1657 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ccagaggtataaggagggcaagtt 389 ||||| |||||||||||||||||| Sbjct: 592 ccagaagtataaggagggcaagtt 615
>dbj|D50413.1|RATTSC2 Rat Tsc2 mRNA for tuberin, complete cds Length = 5573 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tctgctctctgctccatgct 154 |||||||||||||||||||| Sbjct: 2238 tctgctctctgctccatgct 2257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,826,179 Number of Sequences: 3902068 Number of extensions: 4826179 Number of successful extensions: 258238 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 257679 Number of HSP's gapped (non-prelim): 559 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
