ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22b19 |
|---|---|
| Clone Library Name | barley_pub |
>YCF23_CYAPA (P31605) Hypothetical 26.6 kDa protein ycf23| Length = 243 Score = 81.6 bits (200), Expect = 5e-16 Identities = 39/85 (45%), Positives = 58/85 (68%) Frame = +1 Query: 10 KLALELTDLPICVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETR 189 K+ E+ +LPICVS+ P F V+AGA++IEIGN+DS Y+ G + + +L+L ++TR Sbjct: 55 KVKKEVPNLPICVSAIKPELFVPCVKAGAELIEIGNFDSLYNQGYKINFSDVLSLVKQTR 114 Query: 190 KILPGITLSVTVPHTLSLPDQMRLA 264 +LP LSVT+P+ L L Q+ LA Sbjct: 115 SLLPDTPLSVTIPYLLPLNLQLELA 139
>YCF23_ANTSP (P46314) Hypothetical 30.3 kDa protein ycf23 (ORF 277)| Length = 277 Score = 80.5 bits (197), Expect = 1e-15 Identities = 35/88 (39%), Positives = 58/88 (65%) Frame = +1 Query: 4 LVKLALELTDLPICVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRE 183 +V ++ +P+CVSS DP A +V AGA ++EIGN+D FY G+ S++QI+ + ++ Sbjct: 55 IVSFIKSISSIPVCVSSIDPRALYESVLAGADLVEIGNFDCFYTNGVYLSNDQIIAIVKQ 114 Query: 184 TRKILPGITLSVTVPHTLSLPDQMRLAE 267 + +LP + VT+PH L L +Q+ LA+ Sbjct: 115 VKYLLPYTDICVTIPHILKLHEQIYLAQ 142
>YCF23_PORPU (P51373) Hypothetical 29.1 kDa protein ycf23 (ORF265)| Length = 265 Score = 77.4 bits (189), Expect = 9e-15 Identities = 36/88 (40%), Positives = 56/88 (63%) Frame = +1 Query: 1 DLVKLALELTDLPICVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTR 180 D++K ++ +PICVS+ + G ++EIGNYD FY+ G F SE+I +++ Sbjct: 53 DIIKEVESVSKIPICVSAVKSKELLKCQKTGVNILEIGNYDCFYEQGRLFHSEEIKLISK 112 Query: 181 ETRKILPGITLSVTVPHTLSLPDQMRLA 264 ETR +LP TL VT+PH L + +Q++LA Sbjct: 113 ETRNLLPHATLCVTLPHILKIEEQVKLA 140
>YCF23_CYACA (O19904) Hypothetical 27.4 kDa protein ycf23| Length = 249 Score = 68.2 bits (165), Expect = 5e-12 Identities = 34/88 (38%), Positives = 53/88 (60%) Frame = +1 Query: 4 LVKLALELTDLPICVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRE 183 LVK+ ++PICVS + +AV AGA +IE+GNY+S Y S +I+ L E Sbjct: 54 LVKVVKANVNIPICVSGLEIQPIYNAVLAGADLIEVGNYESLYKRNTVLSVCKIITLVEE 113 Query: 184 TRKILPGITLSVTVPHTLSLPDQMRLAE 267 +K+ P + L+VT+P+ L+ DQ+ L + Sbjct: 114 IKKLCPRVPLTVTIPYILNQKDQINLCK 141
>GLMM_BUCAI (P57461) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 444 Score = 33.5 bits (75), Expect = 0.15 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +1 Query: 43 CVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILPGITLSVT 222 C+ + S F ++ A A ++ G+++ FYD GI+ + + LT+E ++ Sbjct: 78 CMPTSAISYFTKSLNASAGIVISGSHNPFYDNGIKIFYKNGVKLTKEIE-----FSIEQK 132 Query: 223 VPHTLSLPD 249 V HT PD Sbjct: 133 VQHTFLYPD 141
>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) (1A1-3B) Length = 966 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 199 PGITLSVTVPHTLSLPDQMR 258 PG+ L VT+P S+PDQ+R Sbjct: 834 PGVDLPVTIPEVSSVPDQIR 853
>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 894 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 199 PGITLSVTVPHTLSLPDQMR 258 PG+ L VT+P S+PDQ+R Sbjct: 762 PGVDLPVTIPEVSSVPDQIR 781
>PROB_LEPIN (P94871) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 290 Score = 28.9 bits (63), Expect = 3.6 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +1 Query: 19 LELTDLPICVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQIL 168 L L++LP +SS D A + A+ A Q + YDSF+ + + S QIL Sbjct: 68 LLLSELPSTISSGDSLAEKQALAAMGQNRLVNLYDSFF-SKVNLSIAQIL 116
>PROB_LEPIC (Q72NQ8) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 290 Score = 28.9 bits (63), Expect = 3.6 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +1 Query: 19 LELTDLPICVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQIL 168 L L++LP +SS D A + A+ A Q + YDSF+ + + S QIL Sbjct: 68 LLLSELPSTISSGDSLAEKQALAAMGQNRLVNLYDSFF-SKVNLSIAQIL 116
>GLE1_BRARE (Q6DRB1) Nucleoporin GLE1 (GLE1-like protein)| Length = 695 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/66 (27%), Positives = 31/66 (46%) Frame = -3 Query: 205 CLEVSSLSPLSGSVFAQKRIRCLRHKRNRSFQSQSFAHQLLPQIGMLKDRQMTHRSEGQS 26 C+EV SLSPLSG + + R L +RS + + L + + + ++ R + S Sbjct: 39 CVEVPSLSPLSGQILKRMSPRMLLKNCSRSSSVRDTSPGLSEEAAVCRSAPISPRLKRSS 98 Query: 25 APARAL 8 A+ Sbjct: 99 CSLPAV 104
>ECHB_MACFA (Q8HXX4) Trifunctional enzyme beta subunit, mitochondrial precursor| (TP-beta) [Includes: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Acetyl-CoA acyltransferase) (Beta-ketothiolase)] Length = 475 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/73 (24%), Positives = 35/73 (47%) Frame = +1 Query: 43 CVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILPGITLSVT 222 C+S++ A+ G +I G D G+E S+ + +R+ RK++ + + + Sbjct: 139 CISANQ------AMTTGVGLIASGQCDVIVAGGVELMSDIPIRHSRKMRKLMLDLNKAKS 192 Query: 223 VPHTLSLPDQMRL 261 + LSL + RL Sbjct: 193 MGQRLSLISKFRL 205
>PPDK_ENTHI (P37213) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,| orthophosphate dikinase) Length = 885 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Frame = +1 Query: 4 LVKLALELTDLPICVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDA--GIEFSSEQILNLT 177 ++K A E+ + + + D PSA + A+E GA+ I + + ++A + + IL+ T Sbjct: 524 ILKWANEIKKIGVFAAGDLPSAAKKALEFGAEGIGLCRTERMFNAVERLPIVVKMILSNT 583 Query: 178 RETRK 192 E RK Sbjct: 584 LEERK 588
>ECHB_RAT (Q60587) Trifunctional enzyme beta subunit, mitochondrial precursor| (TP-beta) [Includes: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Acetyl-CoA acyltransferase) (Beta-ketothiolase)] Length = 475 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = +1 Query: 43 CVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILPGITLSVT 222 C+SS+ A+ +I G D G+E S+ + +R RK++ + + T Sbjct: 139 CISSNQ------AMTTAVGLIASGQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKT 192 Query: 223 VPHTLSLPDQMRL 261 + LSL + RL Sbjct: 193 LAQRLSLLTKFRL 205
>ECHB_MOUSE (Q99JY0) Trifunctional enzyme beta subunit, mitochondrial precursor| (TP-beta) [Includes: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Acetyl-CoA acyltransferase) (Beta-ketothiolase)] Length = 475 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = +1 Query: 43 CVSSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTRETRKILPGITLSVT 222 C+SS+ A+ +I G D G+E S+ + +R RK++ + + T Sbjct: 139 CISSNQ------AMTTAVGLIASGQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKT 192 Query: 223 VPHTLSLPDQMRL 261 + LSL + RL Sbjct: 193 LGQRLSLLSKFRL 205
>RPGF2_HUMAN (Q9Y4G8) Rap guanine nucleotide exchange factor 2 (Neural RAP guanine| nucleotide exchange protein) (nRap GEP) (PDZ domain-containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF) Length = 1499 Score = 24.3 bits (51), Expect(2) = 7.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 174 DKGDKEDTSRHHIVSNSSPHSEP 242 D G E +SR IVSNSS S P Sbjct: 1142 DSGHSEISSRSSIVSNSSFDSVP 1164 Score = 21.9 bits (45), Expect(2) = 7.2 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = +1 Query: 52 SDDPSAFQSAVEAGAQMIEIGNYDSFYDAG 141 S P++ QS+ G + G D+F D+G Sbjct: 1115 SSPPTSPQSSPRKGYTLAPSGTVDNFSDSG 1144
>PCDG8_HUMAN (Q9Y5G5) Protocadherin gamma A8 precursor (PCDH-gamma-A8)| Length = 932 Score = 27.7 bits (60), Expect = 8.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 183 DKEDTSRHHIVSNSSPHSEPPRS 251 D+E+ + HH+V +S +PPRS Sbjct: 201 DREEEAAHHLVLTASDGGKPPRS 223
>GFPT2_RAT (Q4KMC4) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate aminotransferase 2) (D-fructose-6-phosphate amidotransferase 2) (GFAT 2) (GFAT2) Length = 681 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = +1 Query: 49 SSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTR-----ETRKILPG 204 +SDDPS ++ Q I GN+ +F I E + N R ET +L G Sbjct: 298 ASDDPSRAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRVNFETNTVLLG 354
>GFPT2_HUMAN (O94808) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate aminotransferase 2) (D-fructose-6-phosphate amidotransferase 2) (GFAT 2) (GFAT2) Length = 681 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = +1 Query: 49 SSDDPSAFQSAVEAGAQMIEIGNYDSFYDAGIEFSSEQILNLTR-----ETRKILPG 204 +SDDPS ++ Q I GN+ +F I E + N R ET +L G Sbjct: 298 ASDDPSRAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRVNFETNTVLLG 354
>TRPA_STRAW (Q82A81) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 277 Score = 27.7 bits (60), Expect = 8.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 1 DLVKLALELTDLPICVSSDDPSAFQSAVEAG 93 DLV+ TDLP+CV +A Q+A AG Sbjct: 204 DLVRRTRATTDLPVCVGLGVSNATQAAEVAG 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.135 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,307,644 Number of Sequences: 219361 Number of extensions: 598531 Number of successful extensions: 2204 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2204 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
