| Clone Name | bags22b19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C08, full insert sequence Length = 1174 Score = 194 bits (98), Expect = 1e-46 Identities = 227/270 (84%) Strand = Plus / Plus Query: 1 gacttggtaaagctcgcgctggagctgactgaccttccgatctgtgtgtcatctgacgat 60 ||||| |||||||| || |||||||| ||| ||||||||| ||||| || || | ||| Sbjct: 344 gacttagtaaagcttgctctggagcttacttcccttccgatttgtgtctcctccgtagat 403 Query: 61 ccttcagcattccaatctgcggtagaagctggtgcgcaaatgattgagattggaaactac 120 ||||||||||||| ||||||||||||||||| || | |||||||||||||||||||| Sbjct: 404 ccttcagcattccgttctgcggtagaagctggagcaaagatgattgagattggaaactat 463 Query: 121 gattccttttatgacgcaggcatcgaattctcttctgagcaaatactgaacctgacaagg 180 ||||| ||||||||| ||||||||||||||||||||||| | || | || ||||| | | Sbjct: 464 gattctttttatgacacaggcatcgaattctcttctgagaagatcttaaagctgaccaag 523 Query: 181 gagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgagc 240 ||||||||| | || ||||||| || ||| |||| ||||||||||| || || |||||| Sbjct: 524 gagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgagc 583 Query: 241 ctcccagatcagatgagacttgcagagcta 270 |||| ||||||| | ||||||||||||||| Sbjct: 584 ctcctagatcaggtaagacttgcagagcta 613
>dbj|AK103931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E05, full insert sequence Length = 1167 Score = 194 bits (98), Expect = 1e-46 Identities = 227/270 (84%) Strand = Plus / Plus Query: 1 gacttggtaaagctcgcgctggagctgactgaccttccgatctgtgtgtcatctgacgat 60 ||||| |||||||| || |||||||| ||| ||||||||| ||||| || || | ||| Sbjct: 324 gacttagtaaagcttgctctggagcttacttcccttccgatttgtgtctcctccgtagat 383 Query: 61 ccttcagcattccaatctgcggtagaagctggtgcgcaaatgattgagattggaaactac 120 ||||||||||||| ||||||||||||||||| || | |||||||||||||||||||| Sbjct: 384 ccttcagcattccgttctgcggtagaagctggagcaaagatgattgagattggaaactat 443 Query: 121 gattccttttatgacgcaggcatcgaattctcttctgagcaaatactgaacctgacaagg 180 ||||| ||||||||| ||||||||||||||||||||||| | || | || ||||| | | Sbjct: 444 gattctttttatgacacaggcatcgaattctcttctgagaagatcttaaagctgaccaag 503 Query: 181 gagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgagc 240 ||||||||| | || ||||||| || ||| |||| ||||||||||| || || |||||| Sbjct: 504 gagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgagc 563 Query: 241 ctcccagatcagatgagacttgcagagcta 270 |||| ||||||| | ||||||||||||||| Sbjct: 564 ctcctagatcaggtaagacttgcagagcta 593
>dbj|AK068910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002B08, full insert sequence Length = 1196 Score = 194 bits (98), Expect = 1e-46 Identities = 227/270 (84%) Strand = Plus / Plus Query: 1 gacttggtaaagctcgcgctggagctgactgaccttccgatctgtgtgtcatctgacgat 60 ||||| |||||||| || |||||||| ||| ||||||||| ||||| || || | ||| Sbjct: 353 gacttagtaaagcttgctctggagcttacttcccttccgatttgtgtctcctccgtagat 412 Query: 61 ccttcagcattccaatctgcggtagaagctggtgcgcaaatgattgagattggaaactac 120 ||||||||||||| ||||||||||||||||| || | |||||||||||||||||||| Sbjct: 413 ccttcagcattccgttctgcggtagaagctggagcaaagatgattgagattggaaactat 472 Query: 121 gattccttttatgacgcaggcatcgaattctcttctgagcaaatactgaacctgacaagg 180 ||||| ||||||||| ||||||||||||||||||||||| | || | || ||||| | | Sbjct: 473 gattctttttatgacacaggcatcgaattctcttctgagaagatcttaaagctgaccaag 532 Query: 181 gagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgagc 240 ||||||||| | || ||||||| || ||| |||| ||||||||||| || || |||||| Sbjct: 533 gagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgagc 592 Query: 241 ctcccagatcagatgagacttgcagagcta 270 |||| ||||||| | ||||||||||||||| Sbjct: 593 ctcctagatcaggtaagacttgcagagcta 622
>gb|AY108970.1| Zea mays PCO099268 mRNA sequence Length = 1321 Score = 188 bits (95), Expect = 6e-45 Identities = 203/239 (84%) Strand = Plus / Plus Query: 32 accttccgatctgtgtgtcatctgacgatccttcagcattccaatctgcggtagaagctg 91 |||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||| |||| | Sbjct: 448 accttccgatctgtgtctcatctgtagatccttcagcgttccattctgcagtacaagcag 507 Query: 92 gtgcgcaaatgattgagattggaaactacgattccttttatgacgcaggcatcgaattct 151 | || ||||| |||||||||||||||| ||||| |||||||| ||||| || |||| Sbjct: 508 gggctaaaatggttgagattggaaactatgattctttttatgagatgggcattgagttct 567 Query: 152 cttctgagcaaatactgaacctgacaagggagacaaggaagatacttccaggcatcacat 211 | |||||||| |||||||| || |||||||| ||||||||||| ||||||| |||||| | Sbjct: 568 cctctgagcagatactgaagctaacaagggaaacaaggaagatgcttccagacatcacct 627 Query: 212 tgtcagtaacagttccccacactctgagcctcccagatcagatgagacttgcagagcta 270 | |||||||||||||| ||||| || || | ||||||||||||||||| ||||||||| Sbjct: 628 tatcagtaacagttcctcacacacttagtttgccagatcagatgagactagcagagcta 686
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 91.7 bits (46), Expect = 1e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 102 gattgagattggaaactacgattccttttatgacgcaggcatcgaattctcttctgag 159 |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| Sbjct: 139781 gattgagattggaaactatgattctttttatgacacaggcatcgaattctcttctgag 139724 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 58 gatccttcagcattccaatctgcggtagaagctgg 92 |||||||||||||||| ||||||||||||||||| Sbjct: 139915 gatccttcagcattccgttctgcggtagaagctgg 139881 Score = 50.1 bits (25), Expect = 0.004 Identities = 61/73 (83%) Strand = Plus / Minus Query: 180 ggagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgag 239 |||||||||| | || ||||||| || ||| |||| ||||||||||| || || ||||| Sbjct: 139598 ggagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgag 139539 Query: 240 cctcccagatcag 252 ||||| ||||||| Sbjct: 139538 cctcctagatcag 139526
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 91.7 bits (46), Expect = 1e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 102 gattgagattggaaactacgattccttttatgacgcaggcatcgaattctcttctgag 159 |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| Sbjct: 27909364 gattgagattggaaactatgattctttttatgacacaggcatcgaattctcttctgag 27909307 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 58 gatccttcagcattccaatctgcggtagaagctgg 92 |||||||||||||||| ||||||||||||||||| Sbjct: 27909498 gatccttcagcattccgttctgcggtagaagctgg 27909464 Score = 50.1 bits (25), Expect = 0.004 Identities = 61/73 (83%) Strand = Plus / Minus Query: 180 ggagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgag 239 |||||||||| | || ||||||| || ||| |||| ||||||||||| || || ||||| Sbjct: 27909181 ggagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgag 27909122 Query: 240 cctcccagatcag 252 ||||| ||||||| Sbjct: 27909121 cctcctagatcag 27909109
>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a novel gene, the 5' end of the TCF8 gene for transcription factor 8 (represses interleukin 2 expression) (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a pseudogene similar to part of serine palmitoyltransferase, long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1, SPT1, SPTI) and two CpG islands, complete sequence Length = 187517 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 238 agcctcccagatcagatgagact 260 ||||||||||||||||||||||| Sbjct: 14252 agcctcccagatcagatgagact 14230
>emb|AL513202.22| Human DNA sequence from clone RP11-165H20 on chromosome 1 Contains the 3' end of a novel transcript (DKFZp313J1722), the CHI3L2 gene for chitinase 3-like 2 protein, an unprocessed pseudogene, a gene for a novel protein containing a Glycosyl hydrolases family 18 domain and the gene for eosinophil chemotactic cytokine (CHIA), complete sequence Length = 93740 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ttccccacactctgagcctcc 244 ||||||||||||||||||||| Sbjct: 19061 ttccccacactctgagcctcc 19081
>gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, complete sequence Length = 211621 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tcttctgagcaaatactgaa 170 |||||||||||||||||||| Sbjct: 81603 tcttctgagcaaatactgaa 81622
>gb|AC157724.2| Xenopus tropicalis clone ISB1-282F2, complete sequence Length = 79417 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cttccaggcatcacattgtc 215 |||||||||||||||||||| Sbjct: 48002 cttccaggcatcacattgtc 47983
>gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, complete sequence Length = 148929 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tcttctgagcaaatactgaa 170 |||||||||||||||||||| Sbjct: 13209 tcttctgagcaaatactgaa 13228
>dbj|AB100514.1| Ophthalmotilapia ventralis DNA, 255 locus for SINE insertion analysis Length = 691 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctggagctgactgaccttcc 38 |||||||||||||||||||| Sbjct: 83 ctggagctgactgaccttcc 64 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,059,138 Number of Sequences: 3902068 Number of extensions: 2059138 Number of successful extensions: 33781 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33742 Number of HSP's gapped (non-prelim): 35 length of query: 270 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 248 effective length of database: 17,147,199,772 effective search space: 4252505543456 effective search space used: 4252505543456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)