ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags22b19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
2dbj|AK103931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
3dbj|AK068910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
4gb|AY108970.1| Zea mays PCO099268 mRNA sequence 188 6e-45
5gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome... 92 1e-15
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
7emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 46 0.057
8emb|AL513202.22| Human DNA sequence from clone RP11-165H20 on ch... 42 0.89
9gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, com... 40 3.5
10gb|AC157724.2| Xenopus tropicalis clone ISB1-282F2, complete seq... 40 3.5
11gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, co... 40 3.5
12dbj|AB100514.1| Ophthalmotilapia ventralis DNA, 255 locus for SI... 40 3.5

>dbj|AK104836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C08, full
           insert sequence
          Length = 1174

 Score =  194 bits (98), Expect = 1e-46
 Identities = 227/270 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacttggtaaagctcgcgctggagctgactgaccttccgatctgtgtgtcatctgacgat 60
           ||||| |||||||| || |||||||| |||  ||||||||| ||||| || || |  |||
Sbjct: 344 gacttagtaaagcttgctctggagcttacttcccttccgatttgtgtctcctccgtagat 403

                                                                       
Query: 61  ccttcagcattccaatctgcggtagaagctggtgcgcaaatgattgagattggaaactac 120
           |||||||||||||  ||||||||||||||||| ||  | |||||||||||||||||||| 
Sbjct: 404 ccttcagcattccgttctgcggtagaagctggagcaaagatgattgagattggaaactat 463

                                                                       
Query: 121 gattccttttatgacgcaggcatcgaattctcttctgagcaaatactgaacctgacaagg 180
           ||||| ||||||||| ||||||||||||||||||||||| | ||  | || ||||| | |
Sbjct: 464 gattctttttatgacacaggcatcgaattctcttctgagaagatcttaaagctgaccaag 523

                                                                       
Query: 181 gagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgagc 240
           ||||||||| | || |||||||  || ||| |||| ||||||||||| || || ||||||
Sbjct: 524 gagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgagc 583

                                         
Query: 241 ctcccagatcagatgagacttgcagagcta 270
           |||| ||||||| | |||||||||||||||
Sbjct: 584 ctcctagatcaggtaagacttgcagagcta 613



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>dbj|AK103931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E05, full
           insert sequence
          Length = 1167

 Score =  194 bits (98), Expect = 1e-46
 Identities = 227/270 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacttggtaaagctcgcgctggagctgactgaccttccgatctgtgtgtcatctgacgat 60
           ||||| |||||||| || |||||||| |||  ||||||||| ||||| || || |  |||
Sbjct: 324 gacttagtaaagcttgctctggagcttacttcccttccgatttgtgtctcctccgtagat 383

                                                                       
Query: 61  ccttcagcattccaatctgcggtagaagctggtgcgcaaatgattgagattggaaactac 120
           |||||||||||||  ||||||||||||||||| ||  | |||||||||||||||||||| 
Sbjct: 384 ccttcagcattccgttctgcggtagaagctggagcaaagatgattgagattggaaactat 443

                                                                       
Query: 121 gattccttttatgacgcaggcatcgaattctcttctgagcaaatactgaacctgacaagg 180
           ||||| ||||||||| ||||||||||||||||||||||| | ||  | || ||||| | |
Sbjct: 444 gattctttttatgacacaggcatcgaattctcttctgagaagatcttaaagctgaccaag 503

                                                                       
Query: 181 gagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgagc 240
           ||||||||| | || |||||||  || ||| |||| ||||||||||| || || ||||||
Sbjct: 504 gagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgagc 563

                                         
Query: 241 ctcccagatcagatgagacttgcagagcta 270
           |||| ||||||| | |||||||||||||||
Sbjct: 564 ctcctagatcaggtaagacttgcagagcta 593



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>dbj|AK068910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002B08, full
           insert sequence
          Length = 1196

 Score =  194 bits (98), Expect = 1e-46
 Identities = 227/270 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacttggtaaagctcgcgctggagctgactgaccttccgatctgtgtgtcatctgacgat 60
           ||||| |||||||| || |||||||| |||  ||||||||| ||||| || || |  |||
Sbjct: 353 gacttagtaaagcttgctctggagcttacttcccttccgatttgtgtctcctccgtagat 412

                                                                       
Query: 61  ccttcagcattccaatctgcggtagaagctggtgcgcaaatgattgagattggaaactac 120
           |||||||||||||  ||||||||||||||||| ||  | |||||||||||||||||||| 
Sbjct: 413 ccttcagcattccgttctgcggtagaagctggagcaaagatgattgagattggaaactat 472

                                                                       
Query: 121 gattccttttatgacgcaggcatcgaattctcttctgagcaaatactgaacctgacaagg 180
           ||||| ||||||||| ||||||||||||||||||||||| | ||  | || ||||| | |
Sbjct: 473 gattctttttatgacacaggcatcgaattctcttctgagaagatcttaaagctgaccaag 532

                                                                       
Query: 181 gagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgagc 240
           ||||||||| | || |||||||  || ||| |||| ||||||||||| || || ||||||
Sbjct: 533 gagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgagc 592

                                         
Query: 241 ctcccagatcagatgagacttgcagagcta 270
           |||| ||||||| | |||||||||||||||
Sbjct: 593 ctcctagatcaggtaagacttgcagagcta 622



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>gb|AY108970.1| Zea mays PCO099268 mRNA sequence
          Length = 1321

 Score =  188 bits (95), Expect = 6e-45
 Identities = 203/239 (84%)
 Strand = Plus / Plus

                                                                       
Query: 32  accttccgatctgtgtgtcatctgacgatccttcagcattccaatctgcggtagaagctg 91
           |||||||||||||||| |||||||  ||||||||||| ||||| ||||| ||| |||| |
Sbjct: 448 accttccgatctgtgtctcatctgtagatccttcagcgttccattctgcagtacaagcag 507

                                                                       
Query: 92  gtgcgcaaatgattgagattggaaactacgattccttttatgacgcaggcatcgaattct 151
           | ||  ||||| |||||||||||||||| ||||| ||||||||    ||||| || ||||
Sbjct: 508 gggctaaaatggttgagattggaaactatgattctttttatgagatgggcattgagttct 567

                                                                       
Query: 152 cttctgagcaaatactgaacctgacaagggagacaaggaagatacttccaggcatcacat 211
           | |||||||| |||||||| || |||||||| ||||||||||| ||||||| |||||| |
Sbjct: 568 cctctgagcagatactgaagctaacaagggaaacaaggaagatgcttccagacatcacct 627

                                                                      
Query: 212 tgtcagtaacagttccccacactctgagcctcccagatcagatgagacttgcagagcta 270
           | |||||||||||||| ||||| || ||  | ||||||||||||||||| |||||||||
Sbjct: 628 tatcagtaacagttcctcacacacttagtttgccagatcagatgagactagcagagcta 686



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>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02,
              complete sequence
          Length = 157106

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                        
Query: 102    gattgagattggaaactacgattccttttatgacgcaggcatcgaattctcttctgag 159
              |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 139781 gattgagattggaaactatgattctttttatgacacaggcatcgaattctcttctgag 139724



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 58     gatccttcagcattccaatctgcggtagaagctgg 92
              ||||||||||||||||  |||||||||||||||||
Sbjct: 139915 gatccttcagcattccgttctgcggtagaagctgg 139881



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                          
Query: 180    ggagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgag 239
              |||||||||| | || |||||||  || ||| |||| ||||||||||| || || |||||
Sbjct: 139598 ggagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgag 139539

                           
Query: 240    cctcccagatcag 252
              ||||| |||||||
Sbjct: 139538 cctcctagatcag 139526



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                          
Query: 102      gattgagattggaaactacgattccttttatgacgcaggcatcgaattctcttctgag 159
                |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct: 27909364 gattgagattggaaactatgattctttttatgacacaggcatcgaattctcttctgag 27909307



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 58       gatccttcagcattccaatctgcggtagaagctgg 92
                ||||||||||||||||  |||||||||||||||||
Sbjct: 27909498 gatccttcagcattccgttctgcggtagaagctgg 27909464



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                            
Query: 180      ggagacaaggaagatacttccaggcatcacattgtcagtaacagttccccacactctgag 239
                |||||||||| | || |||||||  || ||| |||| ||||||||||| || || |||||
Sbjct: 27909181 ggagacaagggaaatgcttccagatataacactgtccgtaacagttccacatacactgag 27909122

                             
Query: 240      cctcccagatcag 252
                ||||| |||||||
Sbjct: 27909121 cctcctagatcag 27909109



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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
             novel gene, the 5' end of the TCF8 gene for transcription
             factor 8 (represses interleukin 2 expression)
             (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
             pseudogene similar to part of serine palmitoyltransferase,
             long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1,
             LCB1, SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 238   agcctcccagatcagatgagact 260
             |||||||||||||||||||||||
Sbjct: 14252 agcctcccagatcagatgagact 14230



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>emb|AL513202.22| Human DNA sequence from clone RP11-165H20 on chromosome 1 Contains the
             3' end of a novel transcript (DKFZp313J1722), the CHI3L2
             gene for chitinase 3-like 2 protein, an unprocessed
             pseudogene, a gene for a novel protein containing a
             Glycosyl hydrolases family 18 domain and the gene for
             eosinophil chemotactic cytokine (CHIA), complete sequence
          Length = 93740

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   ttccccacactctgagcctcc 244
             |||||||||||||||||||||
Sbjct: 19061 ttccccacactctgagcctcc 19081



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>gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, complete sequence
          Length = 211621

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   tcttctgagcaaatactgaa 170
             ||||||||||||||||||||
Sbjct: 81603 tcttctgagcaaatactgaa 81622



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>gb|AC157724.2| Xenopus tropicalis clone ISB1-282F2, complete sequence
          Length = 79417

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   cttccaggcatcacattgtc 215
             ||||||||||||||||||||
Sbjct: 48002 cttccaggcatcacattgtc 47983



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>gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, complete sequence
          Length = 148929

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   tcttctgagcaaatactgaa 170
             ||||||||||||||||||||
Sbjct: 13209 tcttctgagcaaatactgaa 13228



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>dbj|AB100514.1| Ophthalmotilapia ventralis DNA, 255 locus for SINE insertion
          analysis
          Length = 691

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 19 ctggagctgactgaccttcc 38
          ||||||||||||||||||||
Sbjct: 83 ctggagctgactgaccttcc 64


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,059,138
Number of Sequences: 3902068
Number of extensions: 2059138
Number of successful extensions: 33781
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33742
Number of HSP's gapped (non-prelim): 35
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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