ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YMM1_CAEEL (P34489) Hypothetical protein K01B6.1 35 0.25

>YMM1_CAEEL (P34489) Hypothetical protein K01B6.1|
          Length = 732

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +2

Query: 272 EHELLFCISVHERKHSDDHTLQKLEVG--LSFAPAITLSNMDAEILF*YHYVNYFLF*RN 445
           +++LL  +  H+++ +  H L+ L      S  PA+  +N +  +L    +VN FL  + 
Sbjct: 270 QNDLLATLQQHQQQQAAFHPLRNLRFNPLQSIFPAVLANNNNNSVLATNKHVNNFLIKQE 329

Query: 446 VAEAPP--LHYGEIKVLLQKNKLP 511
            +E PP  +   ++K +L  N  P
Sbjct: 330 ESEVPPITMPMQDLKTMLDANSSP 353


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,673,500
Number of Sequences: 219361
Number of extensions: 1742985
Number of successful extensions: 3204
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3204
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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