Clone Information

BLAST Search Result

Clone Name	bags21m02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC120411.9\| Mus musculus chromosome 6, clone RP24-447O2, comp...	46	0.14
2	gb\|AC108919.7\| Mus musculus chromosome 6, clone RP23-52O21, comp...	46	0.14
3	ref\|XM_652319.1\| Entamoeba histolytica HM-1:IMSS chromosome part...	44	0.56
4	ref\|XM_720097.1\| Plasmodium yoelii yoelii str. 17XNL chloroquine...	44	0.56
5	ref\|XM_672182.1\| Plasmodium berghei strain ANKA hypothetical pro...	44	0.56
6	emb\|AL627129.8\| Zebrafish DNA sequence from clone RP71-1F1 in li...	44	0.56
7	gb\|AC159237.2\| Mus musculus BAC clone RP24-464G10 from chromosom...	44	0.56
8	dbj\|AB126459.1\| Bacillus halodurans gene for transposase A of IS...	44	0.56
9	dbj\|AP003732.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	44	0.56
10	emb\|BX465848.13\| Zebrafish DNA sequence from clone RP71-84E6, co...	42	2.2
11	emb\|AL449265.13\| Human DNA sequence from clone RP11-485I9 on chr...	42	2.2
12	emb\|AL603925.20\| Mouse DNA sequence from clone RP23-175K24 on ch...	42	2.2
13	gb\|AC107614.3\| Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cance...	42	2.2
14	emb\|AL928725.18\| Zebrafish DNA sequence from clone CH211-13O20 i...	42	2.2
15	gb\|AC110892.11\| Mus musculus chromosome 3, clone RP24-490D9, com...	42	2.2
16	dbj\|BS000078.1\| Pan troglodytes chromosome 22 clone:PTB-017L22, ...	42	2.2
17	dbj\|AB018118.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	2.2
18	dbj\|AP001684.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	42	2.2
19	dbj\|AP000561.2\| Homo sapiens genomic DNA, chromosome 21q, clone:...	42	2.2
20	emb\|CT030641.11\| Mouse DNA sequence from clone RP23-32M15 on chr...	42	2.2
21	dbj\|AP000953.2\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	42	2.2
22	emb\|AL672156.9\| Mouse DNA sequence from clone RP23-43L23 on chro...	42	2.2
23	gb\|AC162460.3\| Mus musculus chromosome 5, clone RP24-247A21, com...	40	8.7
24	gb\|AC141884.4\| Mus musculus BAC clone RP24-129E6 from chromosome...	40	8.7
25	gb\|AC164553.2\| Mus musculus BAC clone RP23-361L12 from chromosom...	40	8.7
26	emb\|CR450748.10\| Zebrafish DNA sequence from clone CH211-157P5, ...	40	8.7
27	gb\|AC122488.3\| Mus musculus BAC clone RP24-383B2 from chromosome...	40	8.7
28	ref\|XM_719044.1\| Plasmodium yoelii yoelii str. 17XNL hypothetica...	40	8.7
29	ref\|XM_961013.1\| Plasmodium falciparum 3D7 hypothetical protein ...	40	8.7
30	ref\|XM_670348.1\| Plasmodium berghei strain ANKA hypothetical pro...	40	8.7
31	emb\|AL391811.7\| Human DNA sequence from clone RP11-449J1 on chro...	40	8.7
32	gb\|AC124914.3\| Homo sapiens chromosome 3 clone RP11-146K16, comp...	40	8.7
33	emb\|AL078602.14\|HSJ360M22 Human DNA sequence from clone RP3-360M...	40	8.7
34	gb\|AC130509.6\| Homo sapiens 3 BAC RP11-429M9 (Roswell Park Cance...	40	8.7
35	emb\|CR382399.1\| Plasmodium falciparum chromosome 6, complete seq...	40	8.7
36	gb\|AC173914.3\| Nomascus leucogenys leucogenys clone CH271-445J13...	40	8.7
37	emb\|AL929353.1\|PFA929353 Plasmodium falciparum strain 3D7, chrom...	40	8.7
38	emb\|AL670543.1\|NCB7K22 Neurospora crassa DNA linkage group II BA...	40	8.7
39	emb\|AL390189.2\|NCB13I18 Neurospora crassa DNA linkage group II B...	40	8.7
40	emb\|AL031530.2\|SPCC970 S.pombe chromosome III cosmid c970	40	8.7
41	emb\|CR376848.7\| Zebrafish DNA sequence from clone CH211-197K23 i...	40	8.7
42	emb\|AL645596.7\| Mouse DNA sequence from clone RP23-301E19 on chr...	40	8.7
43	gb\|AC007655.1\| Homo sapiens 12p13 BAC RPCI11-233G1 (Roswell Park...	40	8.7
44	gb\|AC093560.2\| Homo sapiens chromosome 1 clone RP11-398H19, comp...	40	8.7
45	gb\|AC012294.15\| Mus musculus chromosome 11, clone RP23-328G11, c...	40	8.7
46	gb\|AC106755.2\| Homo sapiens chromosome 5 clone RP11-188E14, comp...	40	8.7
47	dbj\|AK158051.1\| Mus musculus adult inner ear cDNA, RIKEN full-le...	40	8.7
48	gb\|AC034159.7\| Homo sapiens BAC clone RP11-344G13 from 4, comple...	40	8.7
49	ref\|NM_001022841.1\| Schizosaccharomyces pombe 972h- hypothetical...	40	8.7
50	gb\|AC025451.6\| Homo sapiens chromosome 5 clone CTD-2141F16, comp...	40	8.7
51	gb\|AC135782.4\| Homo sapiens chromosome 16 clone CTD-2555A7, comp...	40	8.7
52	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
53	gb\|AC093684.4\| Homo sapiens BAC clone RP11-681B22 from 2, comple...	40	8.7
54	gb\|AC137627.10\| Homo sapiens 12 BAC RP11-592H6 (Roswell Park Can...	40	8.7
55	emb\|BX571825.6\| Zebrafish DNA sequence from clone DKEY-158E13 in...	40	8.7
56	dbj\|AP006159.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
57	gb\|AC155915.2\| Mus musculus 6 BAC RP24-462N21 (Roswell Park Canc...	40	8.7
58	gb\|AC105333.16\| Mus musculus chromosome 18, clone RP23-259G13, c...	40	8.7
59	emb\|CT030704.5\| Mouse DNA sequence from clone RP24-317K15 on chr...	40	8.7
60	gb\|AC154809.2\| Mus musculus BAC clone RP24-528G7 from chromosome...	40	8.7
61	gb\|AY098937.1\| Plasmodium falciparum RNA-binding protein Puf1 mR...	40	8.7
62	emb\|AL713839.1\|CNS07YOT Mus musculus chromosome 11 region in the...	40	8.7
63	emb\|AL807755.7\| Mouse DNA sequence from clone RP23-394N20 on chr...	40	8.7
64	emb\|AL161713.4\|CNS01RHE Human chromosome 14 DNA sequence BAC R-2...	40	8.7
65	emb\|X05921.1\|OCDHPR Rabbit mRNA for dihydropyridine (DHP) recept...	40	8.7
66	dbj\|AB047323.1\| Mus musculus gene for Cox17p, complete cds	40	8.7
67	emb\|AL607034.16\| Mouse DNA sequence from clone RP23-303K9 on chr...	40	8.7

>gb|AC120411.9| Mus musculus chromosome 6, clone RP24-447O2, complete sequence
          Length = 202938

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 197    atgtaagctatgtatgatatgga 219
              |||||||||||||||||||||||
Sbjct: 182670 atgtaagctatgtatgatatgga 182648

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>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 197   atgtaagctatgtatgatatgga 219
             |||||||||||||||||||||||
Sbjct: 67106 atgtaagctatgtatgatatgga 67084

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>ref|XM_652319.1| Entamoeba histolytica HM-1:IMSS chromosome partition protein,
            putative (2.t00101) partial mRNA
          Length = 3279

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 225  aataaatataaatgaaaaaaca 246
            ||||||||||||||||||||||
Sbjct: 3045 aataaatataaatgaaaaaaca 3066

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>ref|XM_720097.1| Plasmodium yoelii yoelii str. 17XNL chloroquine resistance marker
            protein (PY04837) partial mRNA
          Length = 2853

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 225  aataaatataaatgaaaaaaca 246
            ||||||||||||||||||||||
Sbjct: 2831 aataaatataaatgaaaaaaca 2810

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>ref|XM_672182.1| Plasmodium berghei strain ANKA hypothetical protein (PB000703.02.0)
            partial mRNA
          Length = 4917

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 225  aataaatataaatgaaaaaaca 246
            ||||||||||||||||||||||
Sbjct: 4868 aataaatataaatgaaaaaaca 4847

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>emb|AL627129.8| Zebrafish DNA sequence from clone RP71-1F1 in linkage group 24 Contains a
              novel gene for a protein similar to acyl-CoA thioester
              hydrolases, a novel gene similar to human SAT
              (spermidine/spermine N1-acetyltransferase), two novel
              genes, three novel genes for proteins similar to arylamine
              N-acetyltransferases, a novel gene similar to human ASP
              (AKAP-associated sperm protein), the 3' part of the dap1a
              gene for death associated protein 1a and a CpG island,
              complete sequence
          Length = 141894

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 422    aattatttcttattttgaagaaatgt 447
              |||||||| |||||||||||||||||
Sbjct: 139677 aattattttttattttgaagaaatgt 139652

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>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence
          Length = 222209

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 425    tatttcttattttgaagaaatg 446
              ||||||||||||||||||||||
Sbjct: 156471 tatttcttattttgaagaaatg 156450

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>dbj|AB126459.1| Bacillus halodurans gene for transposase A of IS643, transposase B of
            IS643
          Length = 2483

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 234  aaatgaaaaaacaagtctacttctct 259
            |||||||||||||||||| |||||||
Sbjct: 2236 aaatgaaaaaacaagtctgcttctct 2211

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>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete
             sequence
          Length = 193132

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 424   ttatttcttattttgaagaaat 445
             ||||||||||||||||||||||
Sbjct: 64338 ttatttcttattttgaagaaat 64317

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>emb|BX465848.13| Zebrafish DNA sequence from clone RP71-84E6, complete sequence
          Length = 179411

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 369    caataacactgtcaaatatgg 389
              |||||||||||||||||||||
Sbjct: 116794 caataacactgtcaaatatgg 116774

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>emb|AL449265.13| Human DNA sequence from clone RP11-485I9 on chromosome X, complete
             sequence
          Length = 125282

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 428   ttcttattttgaagaaatgta 448
             |||||||||||||||||||||
Sbjct: 47379 ttcttattttgaagaaatgta 47359

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>emb|AL603925.20| Mouse DNA sequence from clone RP23-175K24 on chromosome 11 Contains the
              gene for nuclear DNA binding protein C1d and a aldo-keto
              reductase family 1 member B3 (aldose reductase) (Akr1b3)
              pseudogene, complete sequence
          Length = 232869

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 417    atgttaattatttcttatttt 437
              |||||||||||||||||||||
Sbjct: 121121 atgttaattatttcttatttt 121101

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>gb|AC107614.3| Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160917

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 412   tcactatgttaattatttcttattt 436
             |||| ||||||||||||||||||||
Sbjct: 50382 tcacaatgttaattatttcttattt 50406

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>emb|AL928725.18| Zebrafish DNA sequence from clone CH211-13O20 in linkage group 23,
            complete sequence
          Length = 199910

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 369  caataacactgtcaaatatgg 389
            |||||||||||||||||||||
Sbjct: 3177 caataacactgtcaaatatgg 3157

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>gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, complete sequence
          Length = 150740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 420    ttaattatttcttattttgaa 440
              |||||||||||||||||||||
Sbjct: 123297 ttaattatttcttattttgaa 123317

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>dbj|BS000078.1| Pan troglodytes chromosome 22 clone:PTB-017L22, map 22, complete
              sequences
          Length = 161914

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 223    agaataaatataaatgaaaaa 243
              |||||||||||||||||||||
Sbjct: 139788 agaataaatataaatgaaaaa 139808

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>dbj|AB018118.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRI1
          Length = 50700

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   ataaatataaatgaaaaaaca 246
             |||||||||||||||||||||
Sbjct: 16029 ataaatataaatgaaaaaaca 16049

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>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 223    agaataaatataaatgaaaaa 243
              |||||||||||||||||||||
Sbjct: 178404 agaataaatataaatgaaaaa 178424

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>dbj|AP000561.2| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T48, complete
             sequence
          Length = 85203

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 223   agaataaatataaatgaaaaa 243
             |||||||||||||||||||||
Sbjct: 84382 agaataaatataaatgaaaaa 84402

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>emb|CT030641.11| Mouse DNA sequence from clone RP23-32M15 on chromosome 16, complete
              sequence
          Length = 224292

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 615    ggtctagtcatatatgttctt 635
              |||||||||||||||||||||
Sbjct: 160690 ggtctagtcatatatgttctt 160710

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>dbj|AP000953.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B697O17,
           LL56-APP region, complete sequence
          Length = 96067

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 223 agaataaatataaatgaaaaa 243
           |||||||||||||||||||||
Sbjct: 269 agaataaatataaatgaaaaa 289

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>emb|AL672156.9| Mouse DNA sequence from clone RP23-43L23 on chromosome X, complete
              sequence
          Length = 154583

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 219    aggcagaataaatataaatga 239
              |||||||||||||||||||||
Sbjct: 125857 aggcagaataaatataaatga 125877

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>gb|AC162460.3| Mus musculus chromosome 5, clone RP24-247A21, complete sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   cagaataaatataaatgaaa 241
             ||||||||||||||||||||
Sbjct: 35362 cagaataaatataaatgaaa 35343

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>gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome 14, complete sequence
          Length = 174973

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ttgttgacatgttttatgca 181
              ||||||||||||||||||||
Sbjct: 114507 ttgttgacatgttttatgca 114488

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>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete
             sequence
          Length = 217754

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ttgttgacatgttttatgca 181
             ||||||||||||||||||||
Sbjct: 57060 ttgttgacatgttttatgca 57041

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>emb|CR450748.10| Zebrafish DNA sequence from clone CH211-157P5, complete sequence
          Length = 191667

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    ttaattatttcttattttga 439
              ||||||||||||||||||||
Sbjct: 138939 ttaattatttcttattttga 138958

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>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete sequence
          Length = 206003

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    gatatggaggcagaataaat 231
              ||||||||||||||||||||
Sbjct: 126677 gatatggaggcagaataaat 126696

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>ref|XM_719044.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00416)
           partial mRNA
          Length = 9513

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 aataaatataaatgaaaaaa 244
           ||||||||||||||||||||
Sbjct: 207 aataaatataaatgaaaaaa 226

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>ref|XM_961013.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0575c) partial
            mRNA
          Length = 9747

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  agaataaatataaatgaaaa 242
            ||||||||||||||||||||
Sbjct: 2239 agaataaatataaatgaaaa 2258

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>ref|XM_670348.1| Plasmodium berghei strain ANKA hypothetical protein (PB103036.00.0)
           partial mRNA
          Length = 117

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 aataaatataaatgaaaaaa 244
           ||||||||||||||||||||
Sbjct: 39  aataaatataaatgaaaaaa 20

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>emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 150424

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 225    aataaatataaatgaaaaaacaagtctacttc 256
              ||||||||| |||||| || ||||||||||||
Sbjct: 107597 aataaatatcaatgaataatcaagtctacttc 107566

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>gb|AC124914.3| Homo sapiens chromosome 3 clone RP11-146K16, complete sequence
          Length = 187803

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 409   atatcactatgttaattatttcttattt 436
             |||||||||||| |||||| ||||||||
Sbjct: 85832 atatcactatgtaaattatgtcttattt 85805

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>emb|AL078602.14|HSJ360M22 Human DNA sequence from clone RP3-360M22 on chromosome 6q26-27 Contains
             a CpG island, complete sequence
          Length = 152129

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   aaatataaatgaaaaaacaa 247
             ||||||||||||||||||||
Sbjct: 92881 aaatataaatgaaaaaacaa 92900

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>gb|AC130509.6| Homo sapiens 3 BAC RP11-429M9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 64418

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   aacactgtcaaatatggatg 392
             ||||||||||||||||||||
Sbjct: 17856 aacactgtcaaatatggatg 17837

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>emb|CR382399.1| Plasmodium falciparum chromosome 6, complete sequence; segment 2/5
          Length = 348174

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    agaataaatataaatgaaaa 242
              ||||||||||||||||||||
Sbjct: 149529 agaataaatataaatgaaaa 149510

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>gb|AC173914.3| Nomascus leucogenys leucogenys clone CH271-445J13, complete sequence
          Length = 188657

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    aatataaatgaaaaaacaag 248
              ||||||||||||||||||||
Sbjct: 174904 aatataaatgaaaaaacaag 174885

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>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4
          Length = 343050

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    agaataaatataaatgaaaa 242
              ||||||||||||||||||||
Sbjct: 115161 agaataaatataaatgaaaa 115142

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>emb|AL670543.1|NCB7K22 Neurospora crassa DNA linkage group II BAC clone B7K22
          Length = 88306

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ttctcttggcattttgtgga 273
             ||||||||||||||||||||
Sbjct: 88215 ttctcttggcattttgtgga 88196

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>emb|AL390189.2|NCB13I18 Neurospora crassa DNA linkage group II BAC clone B13I18
          Length = 62393

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ttctcttggcattttgtgga 273
             ||||||||||||||||||||
Sbjct: 29360 ttctcttggcattttgtgga 29341

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>emb|AL031530.2|SPCC970 S.pombe chromosome III cosmid c970
          Length = 31438

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 238   gaaaaaacaagtctacttctcttg 261
             |||||||||||||||| |||||||
Sbjct: 15369 gaaaaaacaagtctacatctcttg 15392

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>emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 in linkage group 24,
              complete sequence
          Length = 218909

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    aataaatataaatgaaaaaa 244
              ||||||||||||||||||||
Sbjct: 114240 aataaatataaatgaaaaaa 114221

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>emb|AL645596.7| Mouse DNA sequence from clone RP23-301E19 on chromosome 11 Contains the
             Ccl11 and Ccl12 genes for chemokine (C-C motif) ligand 11
             and 12, complete sequence
          Length = 63924

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   cactgtcaaatatggatgct 394
             ||||||||||||||||||||
Sbjct: 46990 cactgtcaaatatggatgct 46971

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>gb|AC007655.1| Homo sapiens 12p13 BAC RPCI11-233G1 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 180069

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   tacattatggagaaattaaa 484
             ||||||||||||||||||||
Sbjct: 22628 tacattatggagaaattaaa 22647

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>gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, complete sequence
          Length = 199594

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 225   aataaatataaatgaaaaaacaagtctacttc 256
             ||||||||| |||||| || ||||||||||||
Sbjct: 48219 aataaatatcaatgaataatcaagtctacttc 48188

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>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence
          Length = 222121

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   cactgtcaaatatggatgct 394
             ||||||||||||||||||||
Sbjct: 45833 cactgtcaaatatggatgct 45852

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>gb|AC106755.2| Homo sapiens chromosome 5 clone RP11-188E14, complete sequence
          Length = 86871

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   taaatataaatgaaaaaaca 246
             ||||||||||||||||||||
Sbjct: 13441 taaatataaatgaaaaaaca 13460

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>dbj|AK158051.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930021H08 product:Cytochrome c oxidase
            copper chaperone, full insert sequence
          Length = 3687

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 345  aagtgggactgtcttttgctcctg 368
            ||||||||||||||||||| ||||
Sbjct: 2764 aagtgggactgtcttttgcacctg 2741

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>gb|AC034159.7| Homo sapiens BAC clone RP11-344G13 from 4, complete sequence
          Length = 202555

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 526    tacaaagggaagtaatggctacaa 549
              ||||||||||||| ||||||||||
Sbjct: 181898 tacaaagggaagttatggctacaa 181875

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>ref|NM_001022841.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC970.07c),
            partial mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 238  gaaaaaacaagtctacttctcttg 261
            |||||||||||||||| |||||||
Sbjct: 1168 gaaaaaacaagtctacatctcttg 1191

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>gb|AC025451.6| Homo sapiens chromosome 5 clone CTD-2141F16, complete sequence
          Length = 136371

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  taaatataaatgaaaaaaca 246
            ||||||||||||||||||||
Sbjct: 9795 taaatataaatgaaaaaaca 9776

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>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence
          Length = 163550

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   atttgttgacatgttttatg 179
             ||||||||||||||||||||
Sbjct: 60841 atttgttgacatgttttatg 60860

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 410      tatcactatgttaattatttcttatttt 437
                |||||| || ||||||||||||||||||
Sbjct: 14977694 tatcacaatattaattatttcttatttt 14977667

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>gb|AC093684.4| Homo sapiens BAC clone RP11-681B22 from 2, complete sequence
          Length = 160142

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   caataacactgtcaaatatg 388
             ||||||||||||||||||||
Sbjct: 77134 caataacactgtcaaatatg 77153

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>gb|AC137627.10| Homo sapiens 12 BAC RP11-592H6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155345

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    tgggactgtcttttgctcct 367
              ||||||||||||||||||||
Sbjct: 136607 tgggactgtcttttgctcct 136626

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>emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in linkage group 18,
             complete sequence
          Length = 200814

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   aataaatataaatgaaaaaa 244
             ||||||||||||||||||||
Sbjct: 19147 aataaatataaatgaaaaaa 19166

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>dbj|AP006159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1157F01
          Length = 181639

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 410    tatcactatgttaattatttcttatttt 437
              |||||| || ||||||||||||||||||
Sbjct: 117864 tatcacaatattaattatttcttatttt 117837

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>gb|AC155915.2| Mus musculus 6 BAC RP24-462N21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 152279

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    agaataaatataaatgaaaa 242
              ||||||||||||||||||||
Sbjct: 125193 agaataaatataaatgaaaa 125174

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>gb|AC105333.16| Mus musculus chromosome 18, clone RP23-259G13, complete sequence
          Length = 210768

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 469    ttatggagaaattaaagttt 488
              ||||||||||||||||||||
Sbjct: 103264 ttatggagaaattaaagttt 103245

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>emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chromosome 14, complete
            sequence
          Length = 161533

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  ttgttgacatgttttatgca 181
            ||||||||||||||||||||
Sbjct: 8168 ttgttgacatgttttatgca 8187

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>gb|AC154809.2| Mus musculus BAC clone RP24-528G7 from chromosome 16, complete sequence
          Length = 191524

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   aagtgggactgtcttttgctcctg 368
             ||||||||||||||||||| ||||
Sbjct: 66668 aagtgggactgtcttttgcacctg 66691

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>gb|AY098937.1| Plasmodium falciparum RNA-binding protein Puf1 mRNA, complete cds
          Length = 6321

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  agaataaatataaatgaaaa 242
            ||||||||||||||||||||
Sbjct: 5111 agaataaatataaatgaaaa 5130

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>emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
              clone 149H13 of library Caltech CITB-BAC from chromosome 11
              of Mus musculus (mouse)
          Length = 240425

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    cactgtcaaatatggatgct 394
              ||||||||||||||||||||
Sbjct: 128505 cactgtcaaatatggatgct 128486

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>emb|AL807755.7| Mouse DNA sequence from clone RP23-394N20 on chromosome X, complete
             sequence
          Length = 203068

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   cagaataaatataaatgaaa 241
             ||||||||||||||||||||
Sbjct: 71054 cagaataaatataaatgaaa 71073

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>emb|AL161713.4|CNS01RHE Human chromosome 14 DNA sequence BAC R-22K10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157383

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 416   tatgttaattatttcttattttga 439
             |||| |||||||||||||||||||
Sbjct: 63407 tatgataattatttcttattttga 63430

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>emb|X05921.1|OCDHPR Rabbit mRNA for dihydropyridine (DHP) receptor (from skeletal muscle)
          Length = 6083

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 8    aggccgtgatggctgtgtgctccacatgacca 39
            |||||||||||||||||   ||||||||||||
Sbjct: 5839 aggccgtgatggctgtggtgtccacatgacca 5870

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>dbj|AB047323.1| Mus musculus gene for Cox17p, complete cds
          Length = 9981

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 345  aagtgggactgtcttttgctcctg 368
            ||||||||||||||||||| ||||
Sbjct: 8896 aagtgggactgtcttttgcacctg 8873

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>emb|AL607034.16| Mouse DNA sequence from clone RP23-303K9 on chromosome 11, complete
             sequence
          Length = 143148

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   cactgtcaaatatggatgct 394
             ||||||||||||||||||||
Sbjct: 96160 cactgtcaaatatggatgct 96179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,432,359
Number of Sequences: 3902068
Number of extensions: 7432359
Number of successful extensions: 163035
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162760
Number of HSP's gapped (non-prelim): 275
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result