ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22a20 |
|---|---|
| Clone Library Name | barley_pub |
>SCAM2_MOUSE (Q9ERN0) Secretory carrier-associated membrane protein 2 (Secretory| carrier membrane protein 2) Length = 329 Score = 58.9 bits (141), Expect = 1e-08 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 9/171 (5%) Frame = +2 Query: 134 SVPPASNSRLSPLSHEPAGFYNVDIPMD-STKDVKKKEKELQAMXXXXXXXXXXXXXXXX 310 SV PA + + + AG +D ++++KE+ELQ Sbjct: 66 SVEPAQPTPQAVAAAAQAGLLRQQEELDRKAAELERKERELQ------------------ 107 Query: 311 XXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQKMQYLAFSSFLGIALCLFFN 472 + + D NWPP P + + S EIP Q++ + + ++ ++ LF N Sbjct: 108 -NTAANLHVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLN 166 Query: 473 IIATTTAWIKGEGV--MVWLLAIIYFISGVPGAYVLWYRPLYNAMRTGECF 619 ++A AW + + L+I++F+ P A++ WYRP+Y A R+ F Sbjct: 167 LLACL-AWFTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSF 216
>SCAM2_HUMAN (O15127) Secretory carrier-associated membrane protein 2 (Secretory| carrier membrane protein 2) Length = 329 Score = 57.8 bits (138), Expect = 3e-08 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 17/201 (8%) Frame = +2 Query: 68 EAGPMAGRNGFEDDDVNPFAGGSVPPASNSRLSPLSHEP--------AGFYNVDIPMD-S 220 E P + N V G S P + P P AG +D Sbjct: 36 EFNPFSETNAATTVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRK 95 Query: 221 TKDVKKKEKELQAMXXXXXXXXXXXXXXXXXXXXXGIVIEDKNWPPF------FPLIHHN 382 ++++KE+ELQ + + NWPP P + + Sbjct: 96 AAELERKERELQ-------------------NTVANLHVRQNNWPPLPSWCPVKPCFYQD 136 Query: 383 ISNEIPIHLQKMQYLAFSSFLGIALCLFFNIIATTTAWIKGEGV--MVWLLAIIYFISGV 556 S EIP Q++ + + ++ ++ LF N++A AW G + + L+I++F+ Sbjct: 137 FSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFSGNSSKGVDFGLSILWFLIFT 195 Query: 557 PGAYVLWYRPLYNAMRTGECF 619 P A++ WYRP+Y A R+ F Sbjct: 196 PCAFLCWYRPIYKAFRSDNSF 216
>SCAM1_RAT (P56603) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) (SCAMP 37) Length = 338 Score = 55.1 bits (131), Expect = 2e-07 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 11/187 (5%) Frame = +2 Query: 92 NGFEDDDVNPFAGGSVPPASNSR---LSPLSHEPAGFYNVDIPMDSTKDVKKKEKELQAM 262 N F D P G +P N++ + P PA + ++ K+++EL+ Sbjct: 38 NPFSDSRTPPPGGVKMPNVPNTQPAIMKPTEEHPAYTQITKEHALAQAELLKRQEELERK 97 Query: 263 XXXXXXXXXXXXXXXXXXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQKMQY 424 NWPP P + + S +IP+ QK Sbjct: 98 AAELDRREREMQNLSQHG-------RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVK 150 Query: 425 LAFSSFLGIALCLFFNIIATTTAW--IKGEGVMVWLLAIIYFISGVPGAYVLWYRPLYNA 598 L + ++ A+ LF NI AW + + + L+I++F+ P ++V WYRPLY A Sbjct: 151 LMYYLWMFHAVTLFLNIFGCL-AWFCVDSSRAVDFGLSILWFLLFTPCSFVCWYRPLYGA 209 Query: 599 MRTGECF 619 R+ F Sbjct: 210 FRSDSSF 216
>SCAM1_MOUSE (Q8K021) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) Length = 338 Score = 55.1 bits (131), Expect = 2e-07 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 19/190 (10%) Frame = +2 Query: 107 DDVNPFAGGSVPPASNSRL-----------SPLSHEPAGFYNVDIPMDSTKDVKKKEKEL 253 D+ NPF+ PP + ++ P PA + ++ K+++EL Sbjct: 35 DEYNPFSDSRTPPPGSVKMPNVPNTQPAIMKPTEEHPAYTQITKEHALAQAELLKRQEEL 94 Query: 254 QAMXXXXXXXXXXXXXXXXXXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQK 415 + NWPP P + + S +IP+ QK Sbjct: 95 ERKAAELDRREREMQNLSQHG-------RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQK 147 Query: 416 MQYLAFSSFLGIALCLFFNIIATTTAW--IKGEGVMVWLLAIIYFISGVPGAYVLWYRPL 589 L + ++ A+ LF NI AW + + + L+I++F+ P ++V WYRPL Sbjct: 148 TVKLMYYLWMFHAVTLFLNIFGCL-AWFCVDSSRAVDFGLSILWFLLFTPCSFVCWYRPL 206 Query: 590 YNAMRTGECF 619 Y A R+ F Sbjct: 207 YGAFRSDSSF 216
>SCAM1_HUMAN (O15126) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) Length = 338 Score = 54.7 bits (130), Expect = 2e-07 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 11/187 (5%) Frame = +2 Query: 92 NGFEDDDVNPFAGGSVPPASNSR---LSPLSHEPAGFYNVDIPMDSTKDVKKKEKELQAM 262 N F D P G +P N++ + P PA + ++ K+++EL+ Sbjct: 38 NPFSDSRTPPPGGVKMPNVPNTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERK 97 Query: 263 XXXXXXXXXXXXXXXXXXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQKMQY 424 NWPP P + + S +IP+ QK Sbjct: 98 AAELDRREREMQNLSQHG-------RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVK 150 Query: 425 LAFSSFLGIALCLFFNIIATTTAW--IKGEGVMVWLLAIIYFISGVPGAYVLWYRPLYNA 598 L + ++ A+ LF NI AW + + + L+I++F+ P ++V WYRPLY A Sbjct: 151 LMYYLWMFHAVTLFLNIFGCL-AWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGA 209 Query: 599 MRTGECF 619 R+ F Sbjct: 210 FRSDSSF 216
>SCAM3_BOVIN (Q58DR5) Secretory carrier-associated membrane protein 3 (Secretory| carrier membrane protein 3) Length = 347 Score = 54.3 bits (129), Expect = 3e-07 Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 12/175 (6%) Frame = +2 Query: 119 PFAGGSVPPASNSR-LSPLSHEPAGFYNVDIPMDS-TKDVKKKEKELQAMXXXXXXXXXX 292 P A S PP +SR LSP + G Y+ + T ++ KK++EL Sbjct: 60 PIAPPSAPPLQSSRKLSPTEPKNYGSYSTQASTAAATAELLKKQEELNRKAEELDRRERE 119 Query: 293 XXXXXXXXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQKMQYLAFSSFLGIA 454 NWPP P +IS EIP QK + ++ Sbjct: 120 LQHAALGSTAT----RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST 175 Query: 455 LCLFFNIIATTTAWI----KGEGVMVWLLAIIYFISGVPGAYVLWYRPLYNAMRT 607 L L N +A ++ G G + +L I+ F P ++V WYRP+Y A R+ Sbjct: 176 LALLLNFLACLASFCVETSNGSGFGLSILWILLF---TPCSFVCWYRPMYKAFRS 227
>SCAM1_PIG (O77735) Secretory carrier-associated membrane protein 1 (Secretory| carrier membrane protein 1) Length = 338 Score = 54.3 bits (129), Expect = 3e-07 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 20/191 (10%) Frame = +2 Query: 107 DDVNPFAGGSVPPASNSRL-----------SPLSHEPAGFYNVDIPMDSTKDVKKKEKEL 253 D+ NPF+ PP N ++ P PA + ++ K+++EL Sbjct: 35 DEYNPFSDSRTPPPGNVKMPNVPSTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEEL 94 Query: 254 QAMXXXXXXXXXXXXXXXXXXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQK 415 + NWPP P + + S +IP+ QK Sbjct: 95 ERKAAELDRREREMQNLSQHG-------RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQK 147 Query: 416 MQYLAFSSFLGIALCLFFNIIATTTAWI---KGEGVMVWLLAIIYFISGVPGAYVLWYRP 586 + + ++ A+ LF NI AW GV L +I++F+ P ++V WYRP Sbjct: 148 TVKIMYYLWMFHAVTLFLNIFGCL-AWFCVDPSRGVDFGL-SILWFLLFTPCSFVCWYRP 205 Query: 587 LYNAMRTGECF 619 LY A R+ F Sbjct: 206 LYGAFRSDSSF 216
>SCAM4_MOUSE (Q9JKV5) Secretory carrier-associated membrane protein 4 (Secretory| carrier membrane protein 4) (SC4) Length = 230 Score = 53.1 bits (126), Expect = 6e-07 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Frame = +2 Query: 353 PPFFPL---IHHNISNEIPIHLQKMQYLAFSSFLGIALCLFFNIIATTTAWIKGEGVMVW 523 PPF PL + + S+EIP+ Q + + ++ L N++A WI G + Sbjct: 12 PPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWIAGGAGANF 71 Query: 524 LLAIIYFISGVPGAYVLWYRPLYNAMRTGECF 619 LA+++ + P +YV W+RP Y A R F Sbjct: 72 GLALLWLVLFTPCSYVCWFRPAYKAFRADSSF 103
>SCAM4_HUMAN (Q969E2) Secretory carrier-associated membrane protein 4 (Secretory| carrier membrane protein 4) Length = 229 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%) Frame = +2 Query: 338 EDKNWPPF------FPLIHHNISNEIPIHLQKMQYLAFSSFLGIALCLFFNIIATTTAWI 499 ++ N+PP P + N S+EIP+ Q + + ++ L N+IA WI Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWI 63 Query: 500 KGEGVMVWLLAIIYFISGVPGAYVLWYRPLYNAMRTGECF 619 G + LA ++ + P YV W+RP+Y A R F Sbjct: 64 GGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSF 103
>SCAM3_HUMAN (O14828) Secretory carrier-associated membrane protein 3 (Secretory| carrier membrane protein 3) Length = 347 Score = 51.2 bits (121), Expect = 2e-06 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 14/181 (7%) Frame = +2 Query: 119 PFAGGSVPPAS------NSRLSPLSHEPAGFYNVDIPMDS-TKDVKKKEKELQAMXXXXX 277 P A +PP S + +LSP + G Y+ + T ++ KK++EL Sbjct: 55 PPAPAPLPPPSAPSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELD 114 Query: 278 XXXXXXXXXXXXXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQKMQYLAFSS 439 G NWPP P +IS EIP QK + Sbjct: 115 RRERELQHAALG----GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYL 170 Query: 440 FLGIALCLFFNIIATTTAW-IKGEGVMVWLLAIIYFISGVPGAYVLWYRPLYNAMRTGEC 616 ++ L L N +A ++ ++ + L+I++ + P ++V WYRP+Y A R+ Sbjct: 171 WMCSTLALLLNFLACLASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSS 230 Query: 617 F 619 F Sbjct: 231 F 231
>SCAM4_RAT (Q9ET20) Secretory carrier-associated membrane protein 4 (Secretory| carrier membrane protein 4) (SCAMP-4) Length = 230 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%) Frame = +2 Query: 338 EDKNWPP---FFPL---IHHNISNEIPIHLQKMQYLAFSSFLGIALCLFFNIIATTTAWI 499 ++ N+PP F PL + + S+EIP+ Q + + ++ L N++A WI Sbjct: 4 KENNFPPLPHFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCTTLGVNLVACLAWWI 63 Query: 500 KGEGVMVWLLAIIYFISGVPGAYVLWYRPLYNAMRTGECF 619 G + LA+++ + P +YV W+RP Y A R F Sbjct: 64 AGGAGANFGLAMLWLVLFTPCSYVCWFRPAYKAFRADSSF 103
>SCAM3_MOUSE (O35609) Secretory carrier-associated membrane protein 3 (Secretory| carrier membrane protein 3) Length = 349 Score = 50.1 bits (118), Expect = 5e-06 Identities = 49/179 (27%), Positives = 67/179 (37%), Gaps = 12/179 (6%) Frame = +2 Query: 119 PFAGGSVPPASNSR-LSPLSHEPAGFYNVDIPMDS-TKDVKKKEKELQAMXXXXXXXXXX 292 P S P +SR LSP G Y+ + T ++ KK++EL Sbjct: 62 PLPPPSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERE 121 Query: 293 XXXXXXXXXXXGIVIEDKNWPPF------FPLIHHNISNEIPIHLQK----MQYLAFSSF 442 G NWPP P +IS EIP QK M YL S Sbjct: 122 LQHVALG----GAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCST 177 Query: 443 LGIALCLFFNIIATTTAWIKGEGVMVWLLAIIYFISGVPGAYVLWYRPLYNAMRTGECF 619 L + L F + G G + +L ++ F P ++V WYRP+Y A R+ F Sbjct: 178 LALLLNFFACLARFCVDTGSGSGFGLSMLWLLLF---TPCSFVCWYRPMYKAFRSDSSF 233
>SCAM5_HUMAN (Q8TAC9) Secretory carrier-associated membrane protein 5 (Secretory| carrier membrane protein 5) Length = 235 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = +2 Query: 356 PFFPLIHHNISNEIPIHLQKMQYLAFSSFLGIALCLFFNIIATTTAWIKGEGVMVWLLAI 535 P P + + +IP M + ++ ++ L N++ I G G + LA Sbjct: 16 PLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAF 75 Query: 536 IYFISGVPGAYVLWYRPLYNAMRTGECF 619 ++ I P +YV W+RP+Y A +T F Sbjct: 76 LWLILFTPCSYVCWFRPIYKAFKTDSSF 103
>SCAM5_RAT (Q9JKE3) Secretory carrier-associated membrane protein 5 (Secretory| carrier membrane protein 5) Length = 235 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = +2 Query: 356 PFFPLIHHNISNEIPI-HLQKMQYLAFSSFLGIALCLFFNIIATTTAWIKGEGVMVWLLA 532 P P + + +IP HL + L + L ++ L N++ I G G + LA Sbjct: 16 PLKPCFYQDFEADIPPQHLSLTKRLYYLWMLN-SVTLAVNLVGCLAWLIGGGGATNFGLA 74 Query: 533 IIYFISGVPGAYVLWYRPLYNAMRTGECF 619 ++ I P +YV W+RP+Y A +T F Sbjct: 75 FLWLILFTPCSYVCWFRPIYKAFKTDSSF 103
>SCAM5_MOUSE (Q9JKD3) Secretory carrier-associated membrane protein 5 (Secretory| carrier membrane protein 5) Length = 235 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = +2 Query: 356 PFFPLIHHNISNEIPI-HLQKMQYLAFSSFLGIALCLFFNIIATTTAWIKGEGVMVWLLA 532 P P + + +IP HL + L + L ++ L N++ I G G + LA Sbjct: 16 PLKPCFYQDFEADIPPQHLSLTKRLYYLWMLN-SVTLAVNLVGCLAWLIGGGGATNFGLA 74 Query: 533 IIYFISGVPGAYVLWYRPLYNAMRTGECF 619 ++ I P +YV W+RP+Y A +T F Sbjct: 75 FLWLILFTPCSYVCWFRPIYKAFKTDSSF 103
>DD31_DICDI (Q02465) Prespore protein Dd31| Length = 269 Score = 35.4 bits (80), Expect = 0.14 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Frame = +2 Query: 347 NWPPFFPLIHHNISNEIPIHLQKMQYLAFSSFLGI--ALCLFFNIIATTTAWIKGEGVMV 520 N+P +P+I N+ +I I + Q + F F+ + A L +N W+ G +V Sbjct: 84 NFPSSYPMIRLNLEEDIAIR-EYRQIVKFGIFVFLWEAAALVYN-------WVVSIGTIV 135 Query: 521 W------LLAIIYFISGVPGAYVLWYRPLYNAMRTGE 613 + LA+ Y I GVP Y L R LY A E Sbjct: 136 YSAVDNFFLALFYMIVGVPTLYFL-TRKLYRAASVPE 171
>CTL1_TORMA (Q9I9B9) Choline transporter-like protein 1| Length = 646 Score = 29.6 bits (65), Expect = 7.6 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 512 VMVWLLAIIYFISGVPGAYVLWY 580 V+VW+LAI+ I + G VLW+ Sbjct: 234 VLVWILAILTIIGSIGGTAVLWW 256
>TRAL5_ECOLI (Q00187) Protein traL| Length = 241 Score = 29.6 bits (65), Expect = 7.6 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 326 GIVIEDKNWPPFFPLIHHNISNEIPIHLQKM 418 G VI D F PL H+ ISN++P LQ M Sbjct: 82 GDVIIDNGASSFVPLSHYLISNQVPALLQDM 112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,535,769 Number of Sequences: 219361 Number of extensions: 1882601 Number of successful extensions: 5407 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5395 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
