ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags22a17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482574.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1814 Score = 781 bits (394), Expect = 0.0 Identities = 550/602 (91%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||| ||||| |||||||||||||||||| | || |||||||||||| Sbjct: 231 acgccgtccaaggtgctccacctccggaacatgccgtgggagtgcaccgaggaggagctc 290 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 ||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| Sbjct: 291 gtcgagctctgcaagcccttcggcagggtcgtcaacaccatgtgcaacgtcggcgccaac 350 Query: 141 cgcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatat 200 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cgcaaccaggccttcgtcgagttcgcagatcaaaaccaggcaatttcaatggtttcatat 410 Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatatattcagtattca 260 |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 411 tatgcttcttcttcagaacctgctcaagttcgtggcaaaactgtatatatccagtactca 470 Query: 261 aataggcaagaaataacaaacaataaaggcactggtgattcttctggcaatgtcctgctt 320 || || |||||||| || ||||||||||| ||||||||||| ||||||||||| || ||| Sbjct: 471 aacagacaagaaattaccaacaataaaggaactggtgattcctctggcaatgttcttctt 530 Query: 321 gtcacctttgaaggtgtccagcctaacgatgttagcatagatgttattcatttggtattt 380 ||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| Sbjct: 531 gtcacttttgaaggtgtccagcctaatgatattagcatagatgtcattcatttggtattt 590 Query: 381 tctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggca 440 || || ||||||||||| |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 591 tccgcatttgggtttgtccacaagatagcaacctttgagaaggctgctggtttccaggca 650 Query: 441 cttatccaatatactgatgctccaactgctctagaggcaaaaaattcgttagacggaaga 500 ||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||| Sbjct: 651 cttatccaatatactgatgctccaactgcactagaagcaaaaaattcgttggatggaaga 710 Query: 501 agcatcccgagatatctactggctgatcacgtcagcatttgtcacctgcgcataacattt 560 ||||||||||||||| |||| |||| || ||| || ||||||||||||||||| ||| Sbjct: 711 agcatcccgagatatttacttcctgaacatgtccccacctgtcacctgcgcataaccttt 770 Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagggattacacaaat 620 ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 771 tctgcgcacaaggatttgaatatcaagtttcaatcacatcgtagcagggattacacgaat 830 Query: 621 cc 622 || Sbjct: 831 cc 832
>dbj|AK067548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I22, full insert sequence Length = 1814 Score = 781 bits (394), Expect = 0.0 Identities = 550/602 (91%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||| ||||| |||||||||||||||||| | || |||||||||||| Sbjct: 231 acgccgtccaaggtgctccacctccggaacatgccgtgggagtgcaccgaggaggagctc 290 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 ||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| Sbjct: 291 gtcgagctctgcaagcccttcggcagggtcgtcaacaccatgtgcaacgtcggcgccaac 350 Query: 141 cgcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatat 200 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cgcaaccaggccttcgtcgagttcgcagatcaaaaccaggcaatttcaatggtttcatat 410 Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatatattcagtattca 260 |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 411 tatgcttcttcttcagaacctgctcaagttcgtggcaaaactgtatatatccagtactca 470 Query: 261 aataggcaagaaataacaaacaataaaggcactggtgattcttctggcaatgtcctgctt 320 || || |||||||| || ||||||||||| ||||||||||| ||||||||||| || ||| Sbjct: 471 aacagacaagaaattaccaacaataaaggaactggtgattcctctggcaatgttcttctt 530 Query: 321 gtcacctttgaaggtgtccagcctaacgatgttagcatagatgttattcatttggtattt 380 ||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| Sbjct: 531 gtcacttttgaaggtgtccagcctaatgatattagcatagatgtcattcatttggtattt 590 Query: 381 tctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggca 440 || || ||||||||||| |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 591 tccgcatttgggtttgtccacaagatagcaacctttgagaaggctgctggtttccaggca 650 Query: 441 cttatccaatatactgatgctccaactgctctagaggcaaaaaattcgttagacggaaga 500 ||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||| Sbjct: 651 cttatccaatatactgatgctccaactgcactagaagcaaaaaattcgttggatggaaga 710 Query: 501 agcatcccgagatatctactggctgatcacgtcagcatttgtcacctgcgcataacattt 560 ||||||||||||||| |||| |||| || ||| || ||||||||||||||||| ||| Sbjct: 711 agcatcccgagatatttacttcctgaacatgtccccacctgtcacctgcgcataaccttt 770 Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagggattacacaaat 620 ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 771 tctgcgcacaaggatttgaatatcaagtttcaatcacatcgtagcagggattacacgaat 830 Query: 621 cc 622 || Sbjct: 831 cc 832
>gb|AY107158.1| Zea mays PCO099160 mRNA sequence Length = 691 Score = 545 bits (275), Expect = e-152 Identities = 404/447 (90%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 |||||||||||||||||||| || ||||||||||| |||||| | || |||||||||||| Sbjct: 245 acgccgtccaaggtgctgcatcttcggaacatgccatgggagtgcaccgaggaggagctc 304 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 ||||| |||||||| || |||||| |||| || |||||||||||||||||||| || ||| Sbjct: 305 gtcgacctctgcaaacccttcggccgggtcgtaaacaccatgtgcaacgtcggcgctaac 364 Query: 141 cgcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatat 200 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| Sbjct: 365 cgcaaccaggcattcgtcgagtttgcagatcaaaaccaggcaatttcaatggtgtcctat 424 Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatatattcagtattca 260 ||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||| Sbjct: 425 tatgcttcatcttcagaacctgctcaagttcgtggtaaaactgtatatatccaatattca 484 Query: 261 aataggcaagaaataacaaacaataaaggcactggtgattcttctggcaatgtcctgctt 320 |||||||||||||| || ||||||||||||||||| ||||||||||||||||| || ||| Sbjct: 485 aataggcaagaaattactaacaataaaggcactggggattcttctggcaatgttctactt 544 Query: 321 gtcacctttgaaggtgtccagcctaacgatgttagcatagatgttattcatttggtattt 380 ||||| ||||||||||| |||||||| |||| || |||||| ||||||||||||| ||| Sbjct: 545 gtcacttttgaaggtgttcagcctaatgatgctaccatagaagttattcatttggctttt 604 Query: 381 tctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggca 440 || || ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct: 605 tcggcatttgggtttgttcacaagatagctacttttgagaaagcagctggtttccaggca 664 Query: 441 cttatccaatatactgatgctccaact 467 |||||||| ||||||||||| |||||| Sbjct: 665 cttatccagtatactgatgccccaact 691
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 287 bits (145), Expect = 2e-74 Identities = 196/213 (92%) Strand = Plus / Minus Query: 165 gcagatcaaaaccaggcaatttcaatggtttcatattatgcttcatcttcagaacctgcc 224 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 21169850 gcagatcaaaaccaggcaatttcaatggtttcatattatgcttcttcttcagaacctgct 21169791 Query: 225 caagttcgtgggaaaactgtatatattcagtattcaaataggcaagaaataacaaacaat 284 ||||||||||| |||||||||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 21169790 caagttcgtggcaaaactgtatatatccagtactcaaacagacaagaaattaccaacaat 21169731 Query: 285 aaaggcactggtgattcttctggcaatgtcctgcttgtcacctttgaaggtgtccagcct 344 ||||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||| Sbjct: 21169730 aaaggaactggtgattcctctggcaatgttcttcttgtcacttttgaaggtgtccagcct 21169671 Query: 345 aacgatgttagcatagatgttattcatttggta 377 || ||| ||||||||||||| |||||||||||| Sbjct: 21169670 aatgatattagcatagatgtcattcatttggta 21169638 Score = 208 bits (105), Expect = 2e-50 Identities = 135/145 (93%) Strand = Plus / Minus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||| ||||| |||||||||||||||||| | || |||||||||||| Sbjct: 21171692 acgccgtccaaggtgctccacctccggaacatgccgtgggagtgcaccgaggaggagctc 21171633 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 ||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| Sbjct: 21171632 gtcgagctctgcaagcccttcggcagggtcgtcaacaccatgtgcaacgtcggcgccaac 21171573 Query: 141 cgcaaccaggccttcgtggagttcg 165 ||||||||||||||||| ||||||| Sbjct: 21171572 cgcaaccaggccttcgtcgagttcg 21171548 Score = 119 bits (60), Expect = 1e-23 Identities = 72/76 (94%) Strand = Plus / Minus Query: 436 aggcacttatccaatatactgatgctccaactgctctagaggcaaaaaattcgttagacg 495 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || | Sbjct: 21168883 aggcacttatccaatatactgatgctccaactgcactagaagcaaaaaattcgttggatg 21168824 Query: 496 gaagaagcatcccgag 511 |||||||||||||||| Sbjct: 21168823 gaagaagcatcccgag 21168808 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 540 tgtcacctgcgcataacattttctgcgcacaaagatttgaatattaaatttcaatcacat 599 ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| Sbjct: 21168699 tgtcacctgcgcataaccttttctgcgcacaaggatttgaatatcaagtttcaatcacat 21168640 Query: 600 cgcagcagg 608 || |||||| Sbjct: 21168639 cgtagcagg 21168631 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggttt 433 ||||||||| || ||||||||||| |||||||||||||| |||||||| || |||||||| Sbjct: 21169017 ggtattttccgcatttgggtttgtccacaagatagcaacctttgagaaggctgctggttt 21168958 Query: 434 ccagg 438 ||||| Sbjct: 21168957 ccagg 21168953 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 tttgaatattaaatttcaat 594 |||||||||||||||||||| Sbjct: 2849354 tttgaatattaaatttcaat 2849373
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 287 bits (145), Expect = 2e-74 Identities = 196/213 (92%) Strand = Plus / Minus Query: 165 gcagatcaaaaccaggcaatttcaatggtttcatattatgcttcatcttcagaacctgcc 224 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 141060 gcagatcaaaaccaggcaatttcaatggtttcatattatgcttcttcttcagaacctgct 141001 Query: 225 caagttcgtgggaaaactgtatatattcagtattcaaataggcaagaaataacaaacaat 284 ||||||||||| |||||||||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 141000 caagttcgtggcaaaactgtatatatccagtactcaaacagacaagaaattaccaacaat 140941 Query: 285 aaaggcactggtgattcttctggcaatgtcctgcttgtcacctttgaaggtgtccagcct 344 ||||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||| Sbjct: 140940 aaaggaactggtgattcctctggcaatgttcttcttgtcacttttgaaggtgtccagcct 140881 Query: 345 aacgatgttagcatagatgttattcatttggta 377 || ||| ||||||||||||| |||||||||||| Sbjct: 140880 aatgatattagcatagatgtcattcatttggta 140848 Score = 208 bits (105), Expect = 2e-50 Identities = 135/145 (93%) Strand = Plus / Minus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||| ||||| |||||||||||||||||| | || |||||||||||| Sbjct: 142902 acgccgtccaaggtgctccacctccggaacatgccgtgggagtgcaccgaggaggagctc 142843 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 ||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| Sbjct: 142842 gtcgagctctgcaagcccttcggcagggtcgtcaacaccatgtgcaacgtcggcgccaac 142783 Query: 141 cgcaaccaggccttcgtggagttcg 165 ||||||||||||||||| ||||||| Sbjct: 142782 cgcaaccaggccttcgtcgagttcg 142758 Score = 119 bits (60), Expect = 1e-23 Identities = 72/76 (94%) Strand = Plus / Minus Query: 436 aggcacttatccaatatactgatgctccaactgctctagaggcaaaaaattcgttagacg 495 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || | Sbjct: 140093 aggcacttatccaatatactgatgctccaactgcactagaagcaaaaaattcgttggatg 140034 Query: 496 gaagaagcatcccgag 511 |||||||||||||||| Sbjct: 140033 gaagaagcatcccgag 140018 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 540 tgtcacctgcgcataacattttctgcgcacaaagatttgaatattaaatttcaatcacat 599 ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||| Sbjct: 139909 tgtcacctgcgcataaccttttctgcgcacaaggatttgaatatcaagtttcaatcacat 139850 Query: 600 cgcagcagg 608 || |||||| Sbjct: 139849 cgtagcagg 139841 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggttt 433 ||||||||| || ||||||||||| |||||||||||||| |||||||| || |||||||| Sbjct: 140227 ggtattttccgcatttgggtttgtccacaagatagcaacctttgagaaggctgctggttt 140168 Query: 434 ccagg 438 ||||| Sbjct: 140167 ccagg 140163
>dbj|AK104066.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C05, full insert sequence Length = 1209 Score = 285 bits (144), Expect = 9e-74 Identities = 213/236 (90%) Strand = Plus / Plus Query: 387 tttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggcacttatc 446 ||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 5 tttgggtttgtccacaagatagcaacctttgagaaggctgctggtttccaggcacttatc 64 Query: 447 caatatactgatgctccaactgctctagaggcaaaaaattcgttagacggaagaagcatc 506 ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||| Sbjct: 65 caatatactgatgctccaactgcactagaagcaaaaaattcgttggatggaagaagcatc 124 Query: 507 ccgagatatctactggctgatcacgtcagcatttgtcacctgcgcataacattttctgcg 566 ||||||||| |||| |||| || ||| || ||||||||||||||||| ||||||||| Sbjct: 125 ccgagatatttacttcctgaacatgtccccacctgtcacctgcgcataaccttttctgcg 184 Query: 567 cacaaagatttgaatattaaatttcaatcacatcgcagcagggattacacaaatcc 622 ||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||| Sbjct: 185 cacaaggatttgaatatcaagtttcaatcacatcgtagcagggattacacgaatcc 240
>dbj|AK061305.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H05, full insert sequence Length = 1216 Score = 285 bits (144), Expect = 9e-74 Identities = 213/236 (90%) Strand = Plus / Plus Query: 387 tttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggcacttatc 446 ||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 5 tttgggtttgtccacaagatagcaacctttgagaaggctgctggtttccaggcacttatc 64 Query: 447 caatatactgatgctccaactgctctagaggcaaaaaattcgttagacggaagaagcatc 506 ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||| Sbjct: 65 caatatactgatgctccaactgcactagaagcaaaaaattcgttggatggaagaagcatc 124 Query: 507 ccgagatatctactggctgatcacgtcagcatttgtcacctgcgcataacattttctgcg 566 ||||||||| |||| |||| || ||| || ||||||||||||||||| ||||||||| Sbjct: 125 ccgagatatttacttcctgaacatgtccccacctgtcacctgcgcataaccttttctgcg 184 Query: 567 cacaaagatttgaatattaaatttcaatcacatcgcagcagggattacacaaatcc 622 ||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||| Sbjct: 185 cacaaggatttgaatatcaagtttcaatcacatcgtagcagggattacacgaatcc 240
>ref|XM_470716.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1541 Score = 182 bits (92), Expect = 9e-43 Identities = 353/440 (80%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||||||||| |||||| ||||||||||| | | |||||||||||| Sbjct: 52 acgccgtccaaggtgctgcacctgcggaacctgccgtgggagtgcgcggaggaggagctc 111 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 |||||||||||||| || |||||| | | || ||||||| |||| |||||| |||||| Sbjct: 112 gtcgagctctgcaaccccttcggccgcatcgtcaacaccaagtgcggcgtcggcgccaac 171 Query: 141 cgcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatat 200 ||||||||||||||||| |||||| | || || || || ||||| |||||||| || Sbjct: 172 cgcaaccaggccttcgtcgagttcactgacattaatcaagctatttcgatggtttcttac 231 Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatatattcagtattca 260 | ||| |||||||| ||||| || ||| | || || |||||||| || |||||||||||| Sbjct: 232 tttgcatcatcttcggaaccagcgcaaatccgaggcaaaactgtttacattcagtattca 291 Query: 261 aataggcaagaaataacaaacaataaaggcactggtgattcttctggcaatgtcctgctt 320 || || ||||||||| ||||| || || |||| || || |||| ||||| |||| Sbjct: 292 aacagacaagaaatagttaacaacaagagccctggagagactgctggaaatgtgttgcta 351 Query: 321 gtcacctttgaaggtgtccagcctaacgatgttagcatagatgttattcatttggtattt 380 || || | |||||||| || | |||||||| | ||| ||||| || ||| |||| || Sbjct: 352 gttactatagaaggtgttcaagcaaacgatgtcaccatcgatgtgatccatctggttttc 411 Query: 381 tctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggca 440 || |||||||| ||||||||||| ||||| || |||||||| || || ||||| |||||| Sbjct: 412 tcagcttttggatttgttcacaaaatagccacttttgagaaggctgcaggttttcaggca 471 Query: 441 cttatccaatatactgatgc 460 || || ||||| || ||||| Sbjct: 472 ctgattcaatacacagatgc 491 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagggattacac 616 |||||||| || ||| ||||||| || || || ||||||||||||||||||||||| Sbjct: 592 tctgcgcataaggatctgaatatcaagttccagtcacatcgcagcagggattacac 647
>dbj|AK101213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031B03, full insert sequence Length = 1748 Score = 182 bits (92), Expect = 9e-43 Identities = 353/440 (80%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||||||||| |||||| ||||||||||| | | |||||||||||| Sbjct: 227 acgccgtccaaggtgctgcacctgcggaacctgccgtgggagtgcgcggaggaggagctc 286 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 |||||||||||||| || |||||| | | || ||||||| |||| |||||| |||||| Sbjct: 287 gtcgagctctgcaaccccttcggccgcatcgtcaacaccaagtgcggcgtcggcgccaac 346 Query: 141 cgcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatat 200 ||||||||||||||||| |||||| | || || || || ||||| |||||||| || Sbjct: 347 cgcaaccaggccttcgtcgagttcactgacattaatcaagctatttcgatggtttcttac 406 Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatatattcagtattca 260 | ||| |||||||| ||||| || ||| | || || |||||||| || |||||||||||| Sbjct: 407 tttgcatcatcttcggaaccagcgcaaatccgaggcaaaactgtttacattcagtattca 466 Query: 261 aataggcaagaaataacaaacaataaaggcactggtgattcttctggcaatgtcctgctt 320 || || ||||||||| ||||| || || |||| || || |||| ||||| |||| Sbjct: 467 aacagacaagaaatagttaacaacaagagccctggagagactgctgggaatgtgttgcta 526 Query: 321 gtcacctttgaaggtgtccagcctaacgatgttagcatagatgttattcatttggtattt 380 || || | |||||||| || | |||||||| | ||| ||||| || ||| |||| || Sbjct: 527 gttactatagaaggtgttcaagcaaacgatgtcaccatcgatgtgatccatctggttttc 586 Query: 381 tctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggca 440 || |||||||| ||||||||||| ||||| || |||||||| || || ||||| |||||| Sbjct: 587 tcagcttttggatttgttcacaaaatagccacttttgagaaggctgcaggttttcaggca 646 Query: 441 cttatccaatatactgatgc 460 || || ||||| || ||||| Sbjct: 647 ctgattcaatacacagatgc 666 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagggattacac 616 |||||||| || ||| ||||||| || || || ||||||||||||||||||||||| Sbjct: 767 tctgcgcataaggatctgaatatcaagttccagtcacatcgcagcagggattacac 822
>dbj|AK062562.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E01, full insert sequence Length = 1672 Score = 182 bits (92), Expect = 9e-43 Identities = 353/440 (80%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||||||||| |||||| ||||||||||| | | |||||||||||| Sbjct: 182 acgccgtccaaggtgctgcacctgcggaacctgccgtgggagtgcgcggaggaggagctc 241 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 |||||||||||||| || |||||| | | || ||||||| |||| |||||| |||||| Sbjct: 242 gtcgagctctgcaaccccttcggccgcatcgtcaacaccaagtgcggcgtcggcgccaac 301 Query: 141 cgcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatat 200 ||||||||||||||||| |||||| | || || || || ||||| |||||||| || Sbjct: 302 cgcaaccaggccttcgtcgagttcactgacattaatcaagctatttcgatggtttcttac 361 Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatatattcagtattca 260 | ||| |||||||| ||||| || ||| | || || |||||||| || |||||||||||| Sbjct: 362 tttgcatcatcttcggaaccagcgcaaatccgaggcaaaactgtttacattcagtattca 421 Query: 261 aataggcaagaaataacaaacaataaaggcactggtgattcttctggcaatgtcctgctt 320 || || ||||||||| ||||| || || |||| || || |||| ||||| |||| Sbjct: 422 aacagacaagaaatagttaacaacaagagccctggagagactgctggaaatgtgttgcta 481 Query: 321 gtcacctttgaaggtgtccagcctaacgatgttagcatagatgttattcatttggtattt 380 || || | |||||||| || | |||||||| | ||| ||||| || ||| |||| || Sbjct: 482 gttactatagaaggtgttcaagcaaacgatgtcaccatcgatgtgatccatctggttttc 541 Query: 381 tctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccaggca 440 || |||||||| ||||||||||| ||||| || |||||||| || || ||||| |||||| Sbjct: 542 tcagcttttggatttgttcacaaaatagccacttttgagaaggctgcaggttttcaggca 601 Query: 441 cttatccaatatactgatgc 460 || || ||||| || ||||| Sbjct: 602 ctgattcaatacacagatgc 621 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagggattacac 616 |||||||| || ||| ||||||| || || || ||||||||||||||||||||||| Sbjct: 722 tctgcgcataaggatctgaatatcaagttccagtcacatcgcagcagggattacac 777
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 145 bits (73), Expect = 2e-31 Identities = 127/145 (87%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||||||||| |||||| ||||||||||| | | |||||||||||| Sbjct: 14717162 acgccgtccaaggtgctgcacctgcggaacctgccgtgggagtgcgcggaggaggagctc 14717221 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 |||||||||||||| || |||||| | | || ||||||| |||| |||||| |||||| Sbjct: 14717222 gtcgagctctgcaaccccttcggccgcatcgtcaacaccaagtgcggcgtcggcgccaac 14717281 Query: 141 cgcaaccaggccttcgtggagttcg 165 ||||||||||||||||| ||||||| Sbjct: 14717282 cgcaaccaggccttcgtcgagttcg 14717306 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 183 atttcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaact 242 ||||| |||||||| || | ||| |||||||| ||||| || ||| | || || |||||| Sbjct: 14718245 atttcgatggtttcttactttgcatcatcttcggaaccagcgcaaatccgaggcaaaact 14718304 Query: 243 gtatatattcagtattcaaataggcaagaaata 275 || || |||||||||||||| || ||||||||| Sbjct: 14718305 gtttacattcagtattcaaacagacaagaaata 14718337 Score = 46.1 bits (23), Expect = 0.14 Identities = 47/55 (85%) Strand = Plus / Plus Query: 384 gcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccagg 438 |||||||| ||||||||||| ||||| || |||||||| || || ||||| |||| Sbjct: 14719164 gcttttggatttgttcacaaaatagccacttttgagaaggctgcaggttttcagg 14719218 Score = 40.1 bits (20), Expect = 8.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagg 608 |||||||| || ||| ||||||| || || || ||||||||||||||| Sbjct: 14719519 tctgcgcataaggatctgaatatcaagttccagtcacatcgcagcagg 14719566
>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete sequence Length = 130306 Score = 145 bits (73), Expect = 2e-31 Identities = 127/145 (87%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||||||||| |||||| ||||||||||| | | |||||||||||| Sbjct: 56074 acgccgtccaaggtgctgcacctgcggaacctgccgtgggagtgcgcggaggaggagctc 56133 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 |||||||||||||| || |||||| | | || ||||||| |||| |||||| |||||| Sbjct: 56134 gtcgagctctgcaaccccttcggccgcatcgtcaacaccaagtgcggcgtcggcgccaac 56193 Query: 141 cgcaaccaggccttcgtggagttcg 165 ||||||||||||||||| ||||||| Sbjct: 56194 cgcaaccaggccttcgtcgagttcg 56218 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 183 atttcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaact 242 ||||| |||||||| || | ||| |||||||| ||||| || ||| | || || |||||| Sbjct: 57157 atttcgatggtttcttactttgcatcatcttcggaaccagcgcaaatccgaggcaaaact 57216 Query: 243 gtatatattcagtattcaaataggcaagaaata 275 || || |||||||||||||| || ||||||||| Sbjct: 57217 gtttacattcagtattcaaacagacaagaaata 57249 Score = 46.1 bits (23), Expect = 0.14 Identities = 47/55 (85%) Strand = Plus / Plus Query: 384 gcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccagg 438 |||||||| ||||||||||| ||||| || |||||||| || || ||||| |||| Sbjct: 58076 gcttttggatttgttcacaaaatagccacttttgagaaggctgcaggttttcagg 58130 Score = 40.1 bits (20), Expect = 8.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagg 608 |||||||| || ||| ||||||| || || || ||||||||||||||| Sbjct: 58431 tctgcgcataaggatctgaatatcaagttccagtcacatcgcagcagg 58478
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 145 bits (73), Expect = 2e-31 Identities = 127/145 (87%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 ||||||||||||||||||||||| |||||| ||||||||||| | | |||||||||||| Sbjct: 14711696 acgccgtccaaggtgctgcacctgcggaacctgccgtgggagtgcgcggaggaggagctc 14711755 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 |||||||||||||| || |||||| | | || ||||||| |||| |||||| |||||| Sbjct: 14711756 gtcgagctctgcaaccccttcggccgcatcgtcaacaccaagtgcggcgtcggcgccaac 14711815 Query: 141 cgcaaccaggccttcgtggagttcg 165 ||||||||||||||||| ||||||| Sbjct: 14711816 cgcaaccaggccttcgtcgagttcg 14711840 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 183 atttcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaact 242 ||||| |||||||| || | ||| |||||||| ||||| || ||| | || || |||||| Sbjct: 14712779 atttcgatggtttcttactttgcatcatcttcggaaccagcgcaaatccgaggcaaaact 14712838 Query: 243 gtatatattcagtattcaaataggcaagaaata 275 || || |||||||||||||| || ||||||||| Sbjct: 14712839 gtttacattcagtattcaaacagacaagaaata 14712871 Score = 46.1 bits (23), Expect = 0.14 Identities = 47/55 (85%) Strand = Plus / Plus Query: 384 gcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggtttccagg 438 |||||||| ||||||||||| ||||| || |||||||| || || ||||| |||| Sbjct: 14713698 gcttttggatttgttcacaaaatagccacttttgagaaggctgcaggttttcagg 14713752 Score = 40.1 bits (20), Expect = 8.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 561 tctgcgcacaaagatttgaatattaaatttcaatcacatcgcagcagg 608 |||||||| || ||| ||||||| || || || ||||||||||||||| Sbjct: 14714053 tctgcgcataaggatctgaatatcaagttccagtcacatcgcagcagg 14714100
>gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete sequence Length = 120384 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 168 gatcaaaaccaggcaatttcaatggtttcatattatgcttcatcttcagaacctgcccaa 227 |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 70899 gatcaaaatcaagcaatttcaatggtttcatattacgcttcatcttcagagcctgctcag 70958 Query: 228 gttcgtgggaaaactgtatatattcagtattcaaataggcaagaaat 274 |||||||| |||||||| || || || ||||| ||||| || ||||| Sbjct: 70959 gttcgtggtaaaactgtttacatacaatattccaatagacacgaaat 71005 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 567 cacaaagatttgaatattaaatttcaatcacatcgcagcagg 608 |||| |||| ||||||| |||||||||||| ||||||||||| Sbjct: 73727 cacagagatctgaatatcaaatttcaatcaaatcgcagcagg 73768 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 378 ttttctgcttttgggtttgttcacaa 403 |||||||||||||| ||||||||||| Sbjct: 73346 ttttctgcttttggctttgttcacaa 73371
>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence Length = 130592 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 168 gatcaaaaccaggcaatttcaatggtttcatattatgcttcatcttcagaacctgcccaa 227 |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 20352 gatcaaaatcaagcaatttcaatggtttcatattacgcttcatcttcagagcctgctcag 20411 Query: 228 gttcgtgggaaaactgtatatattcagtattcaaataggcaagaaat 274 |||||||| |||||||| || || || ||||| ||||| || ||||| Sbjct: 20412 gttcgtggtaaaactgtttacatacaatattccaatagacacgaaat 20458 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 567 cacaaagatttgaatattaaatttcaatcacatcgcagcagg 608 |||| |||| ||||||| |||||||||||| ||||||||||| Sbjct: 23180 cacagagatctgaatatcaaatttcaatcaaatcgcagcagg 23221 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 378 ttttctgcttttgggtttgttcacaa 403 |||||||||||||| ||||||||||| Sbjct: 22799 ttttctgcttttggctttgttcacaa 22824
>gb|AC140544.21| Medicago truncatula clone mth2-17g16, complete sequence Length = 118777 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 168 gatcaaaaccaggcaatttcaatggtttcatattatgcttcatcttcagaacctgcccaa 227 |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 116813 gatcaaaatcaagcaatttcaatggtttcatattacgcttcatcttcagagcctgctcag 116872 Query: 228 gttcgtgggaaaactgtatatattcagtattcaaataggcaagaaat 274 |||||||| |||||||| || || || ||||| ||||| || ||||| Sbjct: 116873 gttcgtggtaaaactgtttacatacaatattccaatagacacgaaat 116919
>ref|NM_192822.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1569 Score = 99.6 bits (50), Expect = 1e-17 Identities = 155/190 (81%) Strand = Plus / Plus Query: 22 cgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctcg 81 ||||||| |||||| | ||||| ||||| |||||||||| | || ||||||||||| | Sbjct: 38 cgccgtcgaaggtgatccacctgaggaacctgccgtgggactgcacggaggaggagctgg 97 Query: 82 tcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaacc 141 |||||||| | | || ||||||| ||| || ||||| | ||||||||||| ||||||| Sbjct: 98 tcgagctcgggagccccttcggcaaggtcgtcaacacgaaatgcaacgtcggcgccaacc 157 Query: 142 gcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatatt 201 | |||||||||||||| || ||||| || ||||| ||||||||| | ||| | ||||||| Sbjct: 158 ggaaccaggccttcgtcgaattcgctgaccaaaatcaggcaattgctatgatatcatatt 217 Query: 202 atgcttcatc 211 ||| ||||| Sbjct: 218 ttgcatcatc 227 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 373 tggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaa 421 ||||||||||||||||||| |||||||| ||||| || || |||||||| Sbjct: 389 tggtattttctgcttttggctttgttcaaaagattgccacctttgagaa 437
>gb|AC148485.10| Medicago truncatula clone mth2-46j5, complete sequence Length = 111045 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 180 gcaatttcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaa 239 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| || Sbjct: 60060 gcaatttcaatggtttcatattatgcttcatcttcagagcctgctcaggttcgtggcaag 60001 Query: 240 actgtatatattcagtattcaaatag 265 ||||| || ||||| ||||| ||||| Sbjct: 60000 actgtttacattcaatattctaatag 59975
>gb|AC122724.36| Medicago truncatula clone mth2-14m14, complete sequence Length = 122740 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 180 gcaatttcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaa 239 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| || Sbjct: 113908 gcaatttcaatggtttcatattatgcttcatcttcagagcctgctcaggttcgtggcaag 113967 Query: 240 actgtatatattcagtattcaaatag 265 ||||| || ||||| ||||| ||||| Sbjct: 113968 actgtttacattcaatattctaatag 113993
>dbj|AK104869.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B01, full insert sequence Length = 2038 Score = 99.6 bits (50), Expect = 1e-17 Identities = 155/190 (81%) Strand = Plus / Plus Query: 22 cgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctcg 81 ||||||| |||||| | ||||| ||||| |||||||||| | || ||||||||||| | Sbjct: 218 cgccgtcgaaggtgatccacctgaggaacctgccgtgggactgcacggaggaggagctgg 277 Query: 82 tcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaacc 141 |||||||| | | || ||||||| ||| || ||||| | ||||||||||| ||||||| Sbjct: 278 tcgagctcgggagccccttcggcaaggtcgtcaacacgaaatgcaacgtcggcgccaacc 337 Query: 142 gcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatatt 201 | |||||||||||||| || ||||| || ||||| ||||||||| | ||| | ||||||| Sbjct: 338 ggaaccaggccttcgtcgaattcgctgaccaaaatcaggcaattgctatgatatcatatt 397 Query: 202 atgcttcatc 211 ||| ||||| Sbjct: 398 ttgcatcatc 407 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 373 tggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaa 421 ||||||||||||||||||| |||||||| ||||| || || |||||||| Sbjct: 569 tggtattttctgcttttggctttgttcaaaagattgccacctttgagaa 617
>dbj|AK068707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159M21, full insert sequence Length = 2171 Score = 99.6 bits (50), Expect = 1e-17 Identities = 155/190 (81%) Strand = Plus / Plus Query: 22 cgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctcg 81 ||||||| |||||| | ||||| ||||| |||||||||| | || ||||||||||| | Sbjct: 282 cgccgtcgaaggtgatccacctgaggaacctgccgtgggactgcacggaggaggagctgg 341 Query: 82 tcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaacc 141 |||||||| | | || ||||||| ||| || ||||| | ||||||||||| ||||||| Sbjct: 342 tcgagctcgggagccccttcggcaaggtcgtcaacacgaaatgcaacgtcggcgccaacc 401 Query: 142 gcaaccaggccttcgtggagttcgcagatcaaaaccaggcaatttcaatggtttcatatt 201 | |||||||||||||| || ||||| || ||||| ||||||||| | ||| | ||||||| Sbjct: 402 ggaaccaggccttcgtcgaattcgctgaccaaaatcaggcaattgctatgatatcatatt 461 Query: 202 atgcttcatc 211 ||| ||||| Sbjct: 462 ttgcatcatc 471 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 375 gtattttctgcttttgggtttgttcacaagatagcaacgtttgagaa 421 ||||||||||||||||| |||||||| ||||| || || |||||||| Sbjct: 693 gtattttctgcttttggctttgttcaaaagattgccacctttgagaa 739
>ref|NM_110980.2| Arabidopsis thaliana PTB (POLYPYRIMIDINE TRACT-BINDING); RNA binding / nucleic acid binding AT3G01150 (PTB) mRNA, complete cds Length = 1457 Score = 91.7 bits (46), Expect = 3e-15 Identities = 91/106 (85%) Strand = Plus / Plus Query: 354 agcatagatgttattcatttggtattttctgcttttgggtttgttcacaagatagcaacg 413 ||||| |||||||| ||| ||||||||||||||||||| ||||| || || || || || Sbjct: 468 agcatcgatgttatccatctggtattttctgcttttggatttgtgcataaaattgccaca 527 Query: 414 tttgagaaagccgctggtttccaggcacttatccaatatactgatg 459 ||||||||||| ||||||||||||||||| | |||| |||||||| Sbjct: 528 tttgagaaagctgctggtttccaggcactagttcaatttactgatg 573 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 186 tcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgta 245 ||||||||||| |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 300 tcaatggtttcgtattatgcttcatcttcagagcccgcacagattcgtgggaaaactgtc 359 Query: 246 tatattcagta 256 ||||||||||| Sbjct: 360 tatattcagta 370
>emb|BX825797.1|CNS0A7GJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL62ZH11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1433 Score = 91.7 bits (46), Expect = 3e-15 Identities = 91/106 (85%) Strand = Plus / Plus Query: 354 agcatagatgttattcatttggtattttctgcttttgggtttgttcacaagatagcaacg 413 ||||| |||||||| ||| ||||||||||||||||||| ||||| || || || || || Sbjct: 451 agcatcgatgttatccatctggtattttctgcttttggatttgtgcataaaattgccaca 510 Query: 414 tttgagaaagccgctggtttccaggcacttatccaatatactgatg 459 ||||||||||| ||||||||||||||||| | |||| |||||||| Sbjct: 511 tttgagaaagctgctggtttccaggcactagttcaatttactgatg 556 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 186 tcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgta 245 ||||||||||| |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 283 tcaatggtttcgtattatgcttcatcttcagagcccgcacagattcgtgggaaaactgtc 342 Query: 246 tatattcagta 256 ||||||||||| Sbjct: 343 tatattcagta 353
>gb|AF076924.1|AF076924 Arabidopsis thaliana polypyrimidine tract-binding protein homolog (PTB) mRNA, complete cds Length = 1425 Score = 91.7 bits (46), Expect = 3e-15 Identities = 91/106 (85%) Strand = Plus / Plus Query: 354 agcatagatgttattcatttggtattttctgcttttgggtttgttcacaagatagcaacg 413 ||||| |||||||| ||| ||||||||||||||||||| ||||| || || || || || Sbjct: 424 agcatcgatgttatccatctggtattttctgcttttggatttgtgcataaaattgccaca 483 Query: 414 tttgagaaagccgctggtttccaggcacttatccaatatactgatg 459 ||||||||||| ||||||||||||||||| | |||| |||||||| Sbjct: 484 tttgagaaagctgctggtttccaggcactagttcaatttactgatg 529 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 186 tcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgta 245 ||||||||||| |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 256 tcaatggtttcgtattatgcttcatcttcagagcccgcacagattcgtgggaaaactgtc 315 Query: 246 tatattcagta 256 ||||||||||| Sbjct: 316 tatattcagta 326
>dbj|AP004962.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT28H14, TM0141, complete sequence Length = 100810 Score = 91.7 bits (46), Expect = 3e-15 Identities = 94/110 (85%) Strand = Plus / Minus Query: 165 gcagatcaaaaccaggcaatttcaatggtttcatattatgcttcatcttcagaacctgcc 224 ||||||| ||| || || ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 35285 gcagatctaaatcaagccatttcgatggtttcatattatgcttcatcttcagaacctgct 35226 Query: 225 caagttcgtgggaaaactgtatatattcagtattcaaataggcaagaaat 274 || || ||||| |||| || ||||| |||||||| ||||| || ||||| Sbjct: 35225 caggtccgtggtaaaagcgtttatatacagtattctaatagacacgaaat 35176 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 572 agatttgaatattaaatttcaatcacatcgcagcagg 608 |||| ||||||| |||||||||||| ||||||||||| Sbjct: 32761 agatctgaatatcaaatttcaatcaaatcgcagcagg 32725 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 ttttctgcttttgggtttgttcacaa 403 |||||||||||||| ||||||||||| Sbjct: 33146 ttttctgcttttggctttgttcacaa 33121
>gb|DQ222499.1| Solanum tuberosum clone 106A06 polypyrimidine tract-binding-like mRNA, complete cds Length = 1710 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 189 atggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatat 248 ||||||||||||||||||||||||||||| ||||| ||||||||||| || || || || Sbjct: 259 atggtttcatattatgcttcatcttcagagcctgctcaagttcgtggcaagacggtgtac 318 Query: 249 attcagtattc 259 ||||||||||| Sbjct: 319 attcagtattc 329 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 360 gatgttattcatttggtattttctgcttttgggtttgttcacaagatagcaacgtttgag 419 ||||| ||||||||||||||||| || ||||| |||||||| ||||| || || |||||| Sbjct: 430 gatgtcattcatttggtattttcagcctttggttttgttcaaaagatcgctacttttgag 489 Query: 420 aaagccgctggtttccaggca 440 || || || ||||| |||||| Sbjct: 490 aaggctgcaggttttcaggca 510
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence, complete sequence Length = 93735 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 186 tcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgta 245 ||||||||||| |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 44989 tcaatggtttcgtattatgcttcatcttcagagcccgcacagattcgtgggaaaactgtc 44930 Query: 246 tatattcagta 256 ||||||||||| Sbjct: 44929 tatattcagta 44919 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggttt 433 |||||||||||||||||| ||||| || || || || || ||||||||||| |||||||| Sbjct: 44277 ggtattttctgcttttggatttgtgcataaaattgccacatttgagaaagctgctggttt 44218 Query: 434 ccagg 438 ||||| Sbjct: 44217 ccagg 44213
>gb|AY093218.1| Arabidopsis thaliana putative polypyrimidine tract-binding protein (At3g01150) mRNA, complete cds Length = 1513 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 186 tcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgta 245 ||||||||||| |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 302 tcaatggtttcgtattatgcttcatcttcagagcccgcacagattcgtgggaaaactgtc 361 Query: 246 tatattcagta 256 ||||||||||| Sbjct: 362 tatattcagta 372 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggttt 433 |||||||||||||||||| ||||| || || || || || ||||||||||| |||||||| Sbjct: 592 ggtattttctgcttttggatttgtgcataaaattgccacatttgagaaagctgctggttt 651 Query: 434 ccaggcacttatccaatatactgatg 459 ||||||||| | |||| |||||||| Sbjct: 652 ccaggcactagttcaatttactgatg 677
>emb|BX822327.1|CNS0A60G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB29ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1407 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 186 tcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgta 245 ||||||||||| |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 290 tcaatggtttcgtattatgcttcatcttcagagcccgcacagattcgtgggaaaactgtc 349 Query: 246 tatattcagta 256 ||||||||||| Sbjct: 350 tatattcagta 360 Score = 83.8 bits (42), Expect = 6e-13 Identities = 90/106 (84%) Strand = Plus / Plus Query: 354 agcatagatgttattcatttggtattttctgcttttgggtttgttcacaagatagcaacg 413 ||||| ||||| || ||| ||||||||||||||||||| ||||| || || || || || Sbjct: 458 agcatcgatgtaatccatctggtattttctgcttttggatttgtgcataaaattgccaca 517 Query: 414 tttgagaaagccgctggtttccaggcacttatccaatatactgatg 459 ||||||||||| ||||||||||||||||| | |||| |||||||| Sbjct: 518 tttgagaaagctgctggtttccaggcactagttcaatttactgatg 563
>emb|BX822973.1|CNS0A5VG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB78ZB08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1475 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 186 tcaatggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgta 245 ||||||||||| |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 256 tcaatggtttcgtattatgcttcatcttcagagcccgcacagattcgtgggaaaactgtc 315 Query: 246 tatattcagta 256 ||||||||||| Sbjct: 316 tatattcagta 326 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggttt 433 |||||||||||||||||| ||||| || || || || || ||||||||||| |||||||| Sbjct: 546 ggtattttctgcttttggatttgtgcataaaattgccacatttgagaaagctgctggttt 605 Query: 434 ccaggcacttatccaatatactgatg 459 ||||||||| | |||| |||||||| Sbjct: 606 ccaggcactagttcaatttactgatg 631
>gb|DQ252520.1| Solanum tuberosum clone 103F01 polypyrimidine tract-binding protein-like mRNA, complete cds Length = 1721 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 189 atggtttcatattatgcttcatcttcagaacctgcccaagttcgtgggaaaactgtatat 248 ||||||||||||||||||||||||||||| ||||| ||||||||||| || || || || Sbjct: 250 atggtttcatattatgcttcatcttcagagcctgctcaagttcgtggcaagacggtgtac 309 Query: 249 attcagtattc 259 ||||||||||| Sbjct: 310 attcagtattc 320 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 360 gatgttattcatttggtattttctgcttttgggtttgttcacaagatagcaacgtttgag 419 ||||| ||||||||||||||||| || ||||| |||||||| ||||| || || |||||| Sbjct: 421 gatgtcattcatttggtattttcagcctttggttttgttcaaaagatcgctacttttgag 480 Query: 420 aaagccgctggtttccaggca 440 || || || ||||| |||||| Sbjct: 481 aaggctgcaggttttcaggca 501
>gb|AY347783.1| Malus x domestica clone 6-6 polypyrimidine tract-binding protein mRNA, partial cds Length = 159 Score = 81.8 bits (41), Expect = 2e-12 Identities = 113/137 (82%) Strand = Plus / Plus Query: 21 acgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctc 80 |||||||| |||||||| ||||| || ||| | ||||||||| | | ||||||||||| Sbjct: 22 acgccgtcgaaggtgctccacctccgtaacctcccgtgggagtgcgccgaggaggagctg 81 Query: 81 gtcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaac 140 ||||||||||||| || ||||||| | | || ||||||| ||| || ||||| ||||| Sbjct: 82 atcgagctctgcaaacctttcggcaagatcgtcaacaccaagtgtaatgtcggcgccaat 141 Query: 141 cgcaaccaggccttcgt 157 ||||| ||||||||||| Sbjct: 142 cgcaatcaggccttcgt 158
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 1e-11 Identities = 112/136 (82%) Strand = Plus / Minus Query: 22 cgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctcg 81 ||||||| |||||| | ||||| ||||| |||||||||| | || ||||||||||| | Sbjct: 24635011 cgccgtcgaaggtgatccacctgaggaacctgccgtgggactgcacggaggaggagctgg 24634952 Query: 82 tcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaacc 141 |||||||| | | || ||||||| ||| || ||||| | ||||||||||| ||||||| Sbjct: 24634951 tcgagctcgggagccccttcggcaaggtcgtcaacacgaaatgcaacgtcggcgccaacc 24634892 Query: 142 gcaaccaggccttcgt 157 | |||||||||||||| Sbjct: 24634891 ggaaccaggccttcgt 24634876 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaa 421 |||||||||||||||||| |||||||| ||||| || || |||||||| Sbjct: 24632069 ggtattttctgcttttggctttgttcaaaagattgccacctttgagaa 24632022
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 79.8 bits (40), Expect = 1e-11 Identities = 112/136 (82%) Strand = Plus / Minus Query: 22 cgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctcg 81 ||||||| |||||| | ||||| ||||| |||||||||| | || ||||||||||| | Sbjct: 60974 cgccgtcgaaggtgatccacctgaggaacctgccgtgggactgcacggaggaggagctgg 60915 Query: 82 tcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaacc 141 |||||||| | | || ||||||| ||| || ||||| | ||||||||||| ||||||| Sbjct: 60914 tcgagctcgggagccccttcggcaaggtcgtcaacacgaaatgcaacgtcggcgccaacc 60855 Query: 142 gcaaccaggccttcgt 157 | |||||||||||||| Sbjct: 60854 ggaaccaggccttcgt 60839 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaa 421 |||||||||||||||||| |||||||| ||||| || || |||||||| Sbjct: 58032 ggtattttctgcttttggctttgttcaaaagattgccacctttgagaa 57985
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 79.8 bits (40), Expect = 1e-11 Identities = 112/136 (82%) Strand = Plus / Minus Query: 22 cgccgtccaaggtgctgcacctacggaacatgccgtgggagagtactgaggaggagctcg 81 ||||||| |||||| | ||||| ||||| |||||||||| | || ||||||||||| | Sbjct: 3588 cgccgtcgaaggtgatccacctgaggaacctgccgtgggactgcacggaggaggagctgg 3529 Query: 82 tcgagctctgcaagccattcggcagggttgtgaacaccatgtgcaacgtcggagccaacc 141 |||||||| | | || ||||||| ||| || ||||| | ||||||||||| ||||||| Sbjct: 3528 tcgagctcgggagccccttcggcaaggtcgtcaacacgaaatgcaacgtcggcgccaacc 3469 Query: 142 gcaaccaggccttcgt 157 | |||||||||||||| Sbjct: 3468 ggaaccaggccttcgt 3453 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaa 421 |||||||||||||||||| |||||||| ||||| || || |||||||| Sbjct: 646 ggtattttctgcttttggctttgttcaaaagattgccacctttgagaa 599
>gb|BT001239.1| Arabidopsis thaliana putative polypyrimidine tract-binding protein (At3g01150) mRNA, complete cds Length = 721 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 374 ggtattttctgcttttgggtttgttcacaagatagcaacgtttgagaaagccgctggttt 433 |||||||||||||||||| ||||| || || || || || ||||||||||| |||||||| Sbjct: 18 ggtattttctgcttttggatttgtgcataaaattgccacatttgagaaagctgctggttt 77 Query: 434 ccaggcacttatccaatatactgatg 459 ||||||||| | |||| |||||||| Sbjct: 78 ccaggcactagttcaatttactgatg 103
>ref|NM_124697.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G53180 mRNA, complete cds Length = 1607 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 347 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 390 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 ggaagaagcatcccgagatatctactggctga 526 |||||||||||||| || |||||||| ||||| Sbjct: 641 ggaagaagcatccctaggtatctactcgctga 672
>gb|BT020199.1| Arabidopsis thaliana At5g53180 mRNA, complete cds Length = 1290 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 223 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 266 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 ggaagaagcatcccgagatatctactggctga 526 |||||||||||||| || |||||||| ||||| Sbjct: 517 ggaagaagcatccctaggtatctactcgctga 548
>gb|BT015760.1| Arabidopsis thaliana At5g53180 mRNA, complete cds Length = 1392 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 286 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 329 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 ggaagaagcatcccgagatatctactggctga 526 |||||||||||||| || |||||||| ||||| Sbjct: 580 ggaagaagcatccctaggtatctactcgctga 611
>emb|BX831906.1|CNS0A1L9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH38ZG02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1489 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 286 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 329 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 ggaagaagcatcccgagatatctactggctga 526 |||||||||||||| || |||||||| ||||| Sbjct: 580 ggaagaagcatccctaggtatctactcgctga 611
>emb|BX831305.1|CNS0A0Q2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS77ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1543 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 347 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 390
>emb|BX831214.1|CNS0A0PY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS69ZC03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1571 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 347 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 390 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 495 ggaagaagcatcccgagatatctactggctga 526 |||||||||||||| || |||||||| ||||| Sbjct: 641 ggaagaagcatccctaggtatctactcgctga 672
>emb|BX830814.1|CNS0A0OQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS26ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1478 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 291 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 334
>dbj|AB025622.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFH8 Length = 62420 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Minus Query: 201 tatgcttcatcttcagaacctgcccaagttcgtgggaaaactgt 244 |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct: 47826 tatgcttcttcttcggagcctgctcaagttcgtggtaaaactgt 47783
>emb|AL033502.1|CAC38F10 C.albicans cosmid Ca38F10 Length = 39871 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 570 aaagatttgaatattaaatttca 592 ||||||||||||||||||||||| Sbjct: 12419 aaagatttgaatattaaatttca 12441
>emb|CR388016.11| Zebrafish DNA sequence from clone DKEY-106M5 in linkage group 16, complete sequence Length = 164212 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 aataacaaacaataaaggcact 293 |||||||||||||||||||||| Sbjct: 4560 aataacaaacaataaaggcact 4581
>gb|AC158966.5| Mus musculus chromosome 1, clone RP23-382I8, complete sequence Length = 183519 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 tatatattcagtattcaaata 264 ||||||||||||||||||||| Sbjct: 90083 tatatattcagtattcaaata 90063
>gb|BC104461.1| Homo sapiens cDNA clone IMAGE:40030758 Length = 894 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ccaagttcgtgggaaaactgt 244 ||||||||||||||||||||| Sbjct: 324 ccaagttcgtgggaaaactgt 304
>gb|BC104460.1| Homo sapiens cDNA clone IMAGE:40030753 Length = 752 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ccaagttcgtgggaaaactgt 244 ||||||||||||||||||||| Sbjct: 324 ccaagttcgtgggaaaactgt 304
>ref|XM_741628.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g02110) partial mRNA Length = 1941 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 gaggaggagctcgtcgagctc 89 ||||||||||||||||||||| Sbjct: 52 gaggaggagctcgtcgagctc 32
>emb|AL590617.10| Human DNA sequence from clone RP11-390P2 on chromosome 6, complete sequence Length = 124699 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ccaagttcgtgggaaaactgt 244 ||||||||||||||||||||| Sbjct: 42702 ccaagttcgtgggaaaactgt 42682
>emb|AL589165.10| Human DNA sequence from clone RP11-117P22 on chromosome 10 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 112670 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 tgttattcatttggtattttc 382 ||||||||||||||||||||| Sbjct: 96742 tgttattcatttggtattttc 96762
>gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence Length = 220468 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 aataaaggcactggtgattct 302 ||||||||||||||||||||| Sbjct: 213423 aataaaggcactggtgattct 213403
>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence Length = 196331 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 aataaaggcactggtgattct 302 ||||||||||||||||||||| Sbjct: 168427 aataaaggcactggtgattct 168447
>emb|BX784034.8| Zebrafish DNA sequence from clone CH211-194O4 in linkage group 20, complete sequence Length = 187846 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 atttcaatggtttcatattatgctt 207 |||||||||| |||||||||||||| Sbjct: 14843 atttcaatgggttcatattatgctt 14867
>gb|AE012229.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 137 of 460 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 gagaaagccgctggtttccag 437 ||||||||||||||||||||| Sbjct: 663 gagaaagccgctggtttccag 643
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 gagaaagccgctggtttccag 437 ||||||||||||||||||||| Sbjct: 3529164 gagaaagccgctggtttccag 3529184
>dbj|AK086745.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930049D22 product:unclassifiable, full insert sequence Length = 2041 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 tttcatattatgcttcatctt 213 ||||||||||||||||||||| Sbjct: 637 tttcatattatgcttcatctt 617
>gb|AC158680.4| Mus musculus 6 BAC RP23-112F6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206705 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 tttcatattatgcttcatctt 213 ||||||||||||||||||||| Sbjct: 3325 tttcatattatgcttcatctt 3305
>gb|AC101696.14| Mus musculus chromosome 1, clone RP23-238M18, complete sequence Length = 162270 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 tatatattcagtattcaaata 264 ||||||||||||||||||||| Sbjct: 19451 tatatattcagtattcaaata 19431
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 caacgtcggagccaaccgcaaccag 149 |||||||||||||| |||||||||| Sbjct: 3812212 caacgtcggagccagccgcaaccag 3812236
>gb|AC153803.1| Mus musculus 6 BAC RP24-276E19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155295 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 tttcatattatgcttcatctt 213 ||||||||||||||||||||| Sbjct: 66234 tttcatattatgcttcatctt 66254
>gb|AC024842.1| Caenorhabditis elegans cosmid Y59H11AR, complete sequence Length = 23841 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 569 caaagatttgaatattaaatttca 592 ||||||||||||||| |||||||| Sbjct: 1386 caaagatttgaatatcaaatttca 1363
>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2, complete sequence Length = 180904 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tcagtattcaaataggcaag 270 |||||||||||||||||||| Sbjct: 71671 tcagtattcaaataggcaag 71652
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ttcggcagggttgtgaacac 118 |||||||||||||||||||| Sbjct: 735664 ttcggcagggttgtgaacac 735645
>gb|AY505027.1| Helicobacter pylori isolate 34a hypothetical protein gene, partial cds; hypervariable region; and 16S ribosomal RNA gene, partial sequence Length = 1439 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 aagaaataacaaacaataaa 287 |||||||||||||||||||| Sbjct: 1039 aagaaataacaaacaataaa 1058
>ref|XM_417276.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC419084), mRNA Length = 2034 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gcagatcaaaaccaggcaat 184 |||||||||||||||||||| Sbjct: 1156 gcagatcaaaaccaggcaat 1175
>gb|BC055495.1| Danio rerio zgc:66118, mRNA (cDNA clone MGC:66118 IMAGE:2600590), complete cds Length = 1785 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 tattttctgcttttgggttt 395 |||||||||||||||||||| Sbjct: 1261 tattttctgcttttgggttt 1280
>gb|AC114645.9| Mus musculus chromosome 9, clone RP24-131G14, complete sequence Length = 214734 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ctggtttccaggcacttatc 446 |||||||||||||||||||| Sbjct: 91169 ctggtttccaggcacttatc 91150
>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete sequence Length = 170129 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 tgttattcatttggtatttt 381 |||||||||||||||||||| Sbjct: 100203 tgttattcatttggtatttt 100222
>ref|XM_571589.1| Cryptococcus neoformans var. neoformans JEC21 peroxisomal hydratase-dehydrogenase-epimerase (hde) (CNF02530) partial mRNA Length = 2892 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ttcggcagggttgtgaacac 118 |||||||||||||||||||| Sbjct: 525 ttcggcagggttgtgaacac 544
>emb|CT030303.1| Xenopus tropicalis finished cDNA, clone TEgg010e02 Length = 1532 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gcaagaaataacaaacaata 285 |||||||||||||||||||| Sbjct: 1152 gcaagaaataacaaacaata 1133
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggagctcgtcgagctctgca 93 |||||||||||||||||||| Sbjct: 100254 ggagctcgtcgagctctgca 100273
>emb|Z81088.1|CEF53F1 Caenorhabditis elegans Cosmid F53F1, complete sequence Length = 39478 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 aaaactgtatatattcagta 256 |||||||||||||||||||| Sbjct: 33495 aaaactgtatatattcagta 33514
>gb|AC117262.2| Mus musculus BAC clone RP24-537M7 from 2, complete sequence Length = 156547 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 tctgcttttgggtttgttca 400 |||||||||||||||||||| Sbjct: 118097 tctgcttttgggtttgttca 118078
>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence Length = 246921 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttattcatttggtattttct 383 |||||||||||||||||||| Sbjct: 137954 ttattcatttggtattttct 137973
>gb|AC120544.9| Mus musculus chromosome 1, clone RP23-299N6, complete sequence Length = 223752 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 tttggtattttctgcttttg 390 |||||||||||||||||||| Sbjct: 141923 tttggtattttctgcttttg 141904
>emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on chromosome 22q12.1, complete sequence Length = 117939 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttattcatttggtattttct 383 |||||||||||||||||||| Sbjct: 44955 ttattcatttggtattttct 44974
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgcttcatcttcagaacctg 222 |||||||||||||||||||| Sbjct: 843748 tgcttcatcttcagaacctg 843729
>emb|AL645743.10| Zebrafish DNA sequence from clone RP71-1N7 in linkage group 6 Contains a novel gene similar to human SEMA6D (semaphorin 6D), complete sequence Length = 138949 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gggaaaactgtatatattca 253 |||||||||||||||||||| Sbjct: 32338 gggaaaactgtatatattca 32319
>emb|BX908780.7| Zebrafish DNA sequence from clone CH211-198K9 in linkage group 1, complete sequence Length = 199679 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 tgttagcatagatgttattcattt 373 ||||| |||||||||||||||||| Sbjct: 30910 tgttatcatagatgttattcattt 30887
>gb|AF438486.1| Acanthotomicus tanganyikaensis 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 342 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 tttgaatattaaatttcaat 594 |||||||||||||||||||| Sbjct: 157 tttgaatattaaatttcaat 176
>gb|AF259846.1| Theoborus theobromae 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 340 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 tttgaatattaaatttcaat 594 |||||||||||||||||||| Sbjct: 161 tttgaatattaaatttcaat 180
>gb|AC084200.22| Homo sapiens 12q BAC RP11-654D12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191886 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ggtttcatattatgcttcat 210 |||||||||||||||||||| Sbjct: 166083 ggtttcatattatgcttcat 166102
>gb|AC090403.8| Homo sapiens chromosome 18, clone RP11-739N10, complete sequence Length = 181250 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 tattttctgcttttgggttt 395 |||||||||||||||||||| Sbjct: 110064 tattttctgcttttgggttt 110083
>gb|AC091225.2| Drosophila melanogaster 3L BAC RP98-34B24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174774 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 gcaagaaataacaaacaataaagg 289 |||||||| ||||||||||||||| Sbjct: 54233 gcaagaaagaacaaacaataaagg 54210
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgcttcatcttcagaacctg 222 |||||||||||||||||||| Sbjct: 883357 tgcttcatcttcagaacctg 883338
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgcttcatcttcagaacctg 222 |||||||||||||||||||| Sbjct: 795682 tgcttcatcttcagaacctg 795663
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgcttcatcttcagaacctg 222 |||||||||||||||||||| Sbjct: 861862 tgcttcatcttcagaacctg 861843
>dbj|AK018408.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430413N20 product:RIKEN cDNA 1110001N06 gene, full insert sequence Length = 1755 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 attcatttggtattttctgctttt 389 |||||||||||||| ||||||||| Sbjct: 952 attcatttggtattgtctgctttt 975
>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14, complete sequence Length = 181055 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 attatgcttcatcttcagaa 218 |||||||||||||||||||| Sbjct: 142987 attatgcttcatcttcagaa 143006
>gb|AC074317.5| Staphylococcus aureus clone sabac-103, complete sequence Length = 37669 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tgcttcatcttcagaacctg 222 |||||||||||||||||||| Sbjct: 3870 tgcttcatcttcagaacctg 3889
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgcttcatcttcagaacctg 222 |||||||||||||||||||| Sbjct: 859755 tgcttcatcttcagaacctg 859736
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015A04 Length = 152058 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 tttgaatattaaatttcaat 594 |||||||||||||||||||| Sbjct: 112503 tttgaatattaaatttcaat 112522
>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2, complete sequence Length = 185178 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 attttctgcttttgggtttg 396 |||||||||||||||||||| Sbjct: 36487 attttctgcttttgggtttg 36468
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 tttgaatattaaatttcaat 594 |||||||||||||||||||| Sbjct: 22416 tttgaatattaaatttcaat 22435
>emb|Z18852.1|SACFG S.aureus gene for clumping factor Length = 3499 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgcttcatcttcagaacctg 222 |||||||||||||||||||| Sbjct: 3016 tgcttcatcttcagaacctg 2997
>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the complete sequence Length = 287988 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 gcaagaaataacaaacaataaagg 289 |||||||| ||||||||||||||| Sbjct: 48385 gcaagaaagaacaaacaataaagg 48362
>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete sequence Length = 201723 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 219 cctgcccaagttcgtgggaaaactgtat 246 ||||||| |||| ||||||||||||||| Sbjct: 147151 cctgccccagtttgtgggaaaactgtat 147124
>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence Length = 227785 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 tgttattcatttggtatttt 381 |||||||||||||||||||| Sbjct: 18926 tgttattcatttggtatttt 18945
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tctgcttttgggtttgttca 400 |||||||||||||||||||| Sbjct: 149202 tctgcttttgggtttgttca 149221 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,729,136 Number of Sequences: 3902068 Number of extensions: 5729136 Number of successful extensions: 134936 Number of sequences better than 10.0: 101 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134253 Number of HSP's gapped (non-prelim): 679 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
