| Clone Name | bags21l15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1668 Score = 500 bits (252), Expect = e-138 Identities = 441/504 (87%) Strand = Plus / Plus Query: 4 tgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcggcg 63 |||||||||||||| |||||||| ||||| |||||| | |||||||||||||| |||||| Sbjct: 415 tgggcattcctcgggctcactgccaccgtcgccacgcggacgctcccgttcaccgcggcg 474 Query: 64 ttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgg 123 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct: 475 ttcggggcgttcaccaacgaggtcatctggctcatcgtcatatccttcttcttcgcccgg 534 Query: 124 gggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggt 183 |||||||| |||||||| |||||||| || || |||||||| ||||||||||||||||| Sbjct: 535 gggttcgtgaagaccggactcggcgatcgtgtggccacctatttcgtcaagtggttgggg 594 Query: 184 ggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggcc 243 | ||||| |||||| | || ||||| ||| ||||||| |||||||||||||||||||| Sbjct: 595 cgcagcacgctgggcttgtcgtacgggctcgccatcagcgaggcatgcatcgcgccggcg 654 Query: 244 atgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcg 303 ||||||||||||||||||||||| || |||||||||||||| || ||||||||||| || Sbjct: 655 atgcccagcaccacggcgagggccggtggggtgttccttccaatagtcaagtcgctatct 714 Query: 304 ctatcggccggcagcaagccgaatgatccatcagcgaagaagctgggtgcctaccttgtg 363 || ||||| |||||||||||||| || ||||| |||| ||||||||| ||||||||||| Sbjct: 715 ctttcggctggcagcaagccgaacgacccatcggcgaggaagctgggctcctaccttgtg 774 Query: 364 cagtctcagctgcaggcatctggcaactccagtgctctctttttgaccgctgctgcgcag 423 ||||||||| | ||||||||||| ||||| ||||||||||| |||| ||||| || || Sbjct: 775 cagtctcagttacaggcatctggtaactcaagtgctctcttcctgactgctgcagcacaa 834 Query: 424 aatctcctgtgtttgaagttagcggaggaggctggtgtcaaaattgcaagcccttggata 483 |||||| ||||| |||||||||| |||||| |||||| || ||||||| ||| |||||| Sbjct: 835 aatctcttgtgtctgaagttagctgaggagattggtgttaagattgcaaacccatggata 894 Query: 484 tcatggttcaaggttgcaagtttg 507 || ||||| |||||||| |||||| Sbjct: 895 tcttggtttaaggttgctagtttg 918
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 406 bits (205), Expect = e-110 Identities = 328/369 (88%) Strand = Plus / Minus Query: 4 tgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcggcg 63 |||||||||||||| |||||||| ||||| |||||| | |||||||||||||| |||||| Sbjct: 23817395 tgggcattcctcgggctcactgccaccgtcgccacgcggacgctcccgttcaccgcggcg 23817336 Query: 64 ttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgg 123 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct: 23817335 ttcggggcgttcaccaacgaggtcatctggctcatcgtcatatccttcttcttcgcccgg 23817276 Query: 124 gggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggt 183 |||||||| |||||||| |||||||| || || |||||||| ||||||||||||||||| Sbjct: 23817275 gggttcgtgaagaccggactcggcgatcgtgtggccacctatttcgtcaagtggttgggg 23817216 Query: 184 ggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggcc 243 | ||||| |||||| | || ||||| ||| ||||||| |||||||||||||||||||| Sbjct: 23817215 cgcagcacgctgggcttgtcgtacgggctcgccatcagcgaggcatgcatcgcgccggcg 23817156 Query: 244 atgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcg 303 ||||||||||||||||||||||| || |||||||||||||| || ||||||||||| || Sbjct: 23817155 atgcccagcaccacggcgagggccggtggggtgttccttccaatagtcaagtcgctatct 23817096 Query: 304 ctatcggccggcagcaagccgaatgatccatcagcgaagaagctgggtgcctaccttgtg 363 || ||||| |||||||||||||| || ||||| |||| ||||||||| ||||||||||| Sbjct: 23817095 ctttcggctggcagcaagccgaacgacccatcggcgaggaagctgggctcctaccttgtg 23817036 Query: 364 cagtctcag 372 ||||||||| Sbjct: 23817035 cagtctcag 23817027 Score = 103 bits (52), Expect = 6e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 376 caggcatctggcaactccagtgctctctttttgaccgctgctgcgcagaatctcctgtgt 435 ||||||||||| ||||| ||||||||||| |||| ||||| || || |||||| ||||| Sbjct: 23815993 caggcatctggtaactcaagtgctctcttcctgactgctgcagcacaaaatctcttgtgt 23815934 Query: 436 ttgaagttagcggaggaggctggtgtcaaaattgcaagcccttggatatcatggttcaag 495 |||||||||| |||||| |||||| || ||||||| ||| |||||||| ||||| ||| Sbjct: 23815933 ctgaagttagctgaggagattggtgttaagattgcaaacccatggatatcttggtttaag 23815874 Query: 496 gttgcaagtttg 507 ||||| |||||| Sbjct: 23815873 gttgctagtttg 23815862
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 406 bits (205), Expect = e-110 Identities = 328/369 (88%) Strand = Plus / Minus Query: 4 tgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcggcg 63 |||||||||||||| |||||||| ||||| |||||| | |||||||||||||| |||||| Sbjct: 106595 tgggcattcctcgggctcactgccaccgtcgccacgcggacgctcccgttcaccgcggcg 106536 Query: 64 ttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgg 123 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct: 106535 ttcggggcgttcaccaacgaggtcatctggctcatcgtcatatccttcttcttcgcccgg 106476 Query: 124 gggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggt 183 |||||||| |||||||| |||||||| || || |||||||| ||||||||||||||||| Sbjct: 106475 gggttcgtgaagaccggactcggcgatcgtgtggccacctatttcgtcaagtggttgggg 106416 Query: 184 ggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggcc 243 | ||||| |||||| | || ||||| ||| ||||||| |||||||||||||||||||| Sbjct: 106415 cgcagcacgctgggcttgtcgtacgggctcgccatcagcgaggcatgcatcgcgccggcg 106356 Query: 244 atgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcg 303 ||||||||||||||||||||||| || |||||||||||||| || ||||||||||| || Sbjct: 106355 atgcccagcaccacggcgagggccggtggggtgttccttccaatagtcaagtcgctatct 106296 Query: 304 ctatcggccggcagcaagccgaatgatccatcagcgaagaagctgggtgcctaccttgtg 363 || ||||| |||||||||||||| || ||||| |||| ||||||||| ||||||||||| Sbjct: 106295 ctttcggctggcagcaagccgaacgacccatcggcgaggaagctgggctcctaccttgtg 106236 Query: 364 cagtctcag 372 ||||||||| Sbjct: 106235 cagtctcag 106227 Score = 103 bits (52), Expect = 6e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 376 caggcatctggcaactccagtgctctctttttgaccgctgctgcgcagaatctcctgtgt 435 ||||||||||| ||||| ||||||||||| |||| ||||| || || |||||| ||||| Sbjct: 105193 caggcatctggtaactcaagtgctctcttcctgactgctgcagcacaaaatctcttgtgt 105134 Query: 436 ttgaagttagcggaggaggctggtgtcaaaattgcaagcccttggatatcatggttcaag 495 |||||||||| |||||| |||||| || ||||||| ||| |||||||| ||||| ||| Sbjct: 105133 ctgaagttagctgaggagattggtgttaagattgcaaacccatggatatcttggtttaag 105074 Query: 496 gttgcaagtttg 507 ||||| |||||| Sbjct: 105073 gttgctagtttg 105062
>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_H02 Length = 108603 Score = 406 bits (205), Expect = e-110 Identities = 328/369 (88%) Strand = Plus / Minus Query: 4 tgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcggcg 63 |||||||||||||| |||||||| ||||| |||||| | |||||||||||||| |||||| Sbjct: 9099 tgggcattcctcgggctcactgccaccgtcgccacgcggacgctcccgttcaccgcggcg 9040 Query: 64 ttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgg 123 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct: 9039 ttcggggcgttcaccaacgaggtcatctggctcatcgtcatatccttcttcttcgcccgg 8980 Query: 124 gggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggt 183 |||||||| |||||||| |||||||| || || |||||||| ||||||||||||||||| Sbjct: 8979 gggttcgtgaagaccggactcggcgatcgtgtggccacctatttcgtcaagtggttgggg 8920 Query: 184 ggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggcc 243 | ||||| |||||| | || ||||| ||| ||||||| |||||||||||||||||||| Sbjct: 8919 cgcagcacgctgggcttgtcgtacgggctcgccatcagcgaggcatgcatcgcgccggcg 8860 Query: 244 atgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcg 303 ||||||||||||||||||||||| || |||||||||||||| || ||||||||||| || Sbjct: 8859 atgcccagcaccacggcgagggccggtggggtgttccttccaatagtcaagtcgctatct 8800 Query: 304 ctatcggccggcagcaagccgaatgatccatcagcgaagaagctgggtgcctaccttgtg 363 || ||||| |||||||||||||| || ||||| |||| ||||||||| ||||||||||| Sbjct: 8799 ctttcggctggcagcaagccgaacgacccatcggcgaggaagctgggctcctaccttgtg 8740 Query: 364 cagtctcag 372 ||||||||| Sbjct: 8739 cagtctcag 8731 Score = 103 bits (52), Expect = 6e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 376 caggcatctggcaactccagtgctctctttttgaccgctgctgcgcagaatctcctgtgt 435 ||||||||||| ||||| ||||||||||| |||| ||||| || || |||||| ||||| Sbjct: 7697 caggcatctggtaactcaagtgctctcttcctgactgctgcagcacaaaatctcttgtgt 7638 Query: 436 ttgaagttagcggaggaggctggtgtcaaaattgcaagcccttggatatcatggttcaag 495 |||||||||| |||||| |||||| || ||||||| ||| |||||||| ||||| ||| Sbjct: 7637 ctgaagttagctgaggagattggtgttaagattgcaaacccatggatatcttggtttaag 7578 Query: 496 gttgcaagtttg 507 ||||| |||||| Sbjct: 7577 gttgctagtttg 7566
>dbj|AB112938.1| Zea mays ZmpDCT2 mRNA for plastidic general dicarboxylate transporter, complete cds Length = 1992 Score = 319 bits (161), Expect = 5e-84 Identities = 380/453 (83%) Strand = Plus / Plus Query: 1 gcgtgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcg 60 |||||||| ||||| |||||||| || ||||| ||||| | |||||||| ||||| || Sbjct: 448 gcgtgggcgttccttggcctcacagccaccgtcgccacccgcacgctccccttcaccgcc 507 Query: 61 gcgttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgca 120 ||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || Sbjct: 508 gcgttcggggcgttcactaacgaagtcatctggctcatcgtcatatccttcttcttcgcg 567 Query: 121 cgggggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttg 180 || || || ||||| ||||| |||||||||||||| ||||||||||||||||| ||| || Sbjct: 568 cgcggctttgtcaaaaccggactcggcgaccgcgtcgccacctacttcgtcaaatggctg 627 Query: 181 ggtggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccg 240 || | |||||| ||||||||||||| || || ||||||| ||||| |||| | || Sbjct: 628 gggcgcagcactttgggcctatcctatgggcttgccatcagcgaggctctcatctcccct 687 Query: 241 gccatgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcgctg 300 |||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 688 gccatgcccagcaccacggccagggctggaggtgttttccttcccatcgtcaagtcgcta 747 Query: 301 tcgctatcggccggcagcaagccgaatgatccatcagcgaagaagctgggtgcctacctt 360 ||||| ||| |||| |||||||| || |||||||| |||||||| || || | || ||| Sbjct: 748 tcgctctcgtccggaagcaagcccaacgatccatcggcgaagaaactcggctcttatctt 807 Query: 361 gtgcagtctcagctgcaggcatctggcaactccagtgctctctttttgaccgctgctgcg 420 ||||| || ||| | |||||| ||| ||||||||||||||||| ||||| || ||||| Sbjct: 808 gtgcaatcgcagttacaggcagctgcgaactccagtgctctcttcttgacagcagctgca 867 Query: 421 cagaatctcctgtgtttgaagttagcggaggag 453 ||||| || ||||| |||||||||| |||||| Sbjct: 868 cagaacctgttgtgtctgaagttagcagaggag 900
>dbj|AB112939.1| Zea mays ZmpDCT3 mRNA for plastidic general dicarboxylate transporter, complete cds Length = 1990 Score = 311 bits (157), Expect = 1e-81 Identities = 379/453 (83%) Strand = Plus / Plus Query: 1 gcgtgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcg 60 |||||||| ||||| |||||||| || ||||| ||||| | |||||||| ||||| || Sbjct: 441 gcgtgggcgttccttggcctcacagccaccgtcgccacccgcacgctccccttcactgcc 500 Query: 61 gcgttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgca 120 ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| || Sbjct: 501 gcgttcggggcgttcactaacgaagtcatctggctcatcgtcatctccttcttcttcgcg 560 Query: 121 cgggggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttg 180 || || || ||||| ||||| |||||||||||||| ||||||||||||||||| ||| || Sbjct: 561 cgcggctttgtcaaaaccggactcggcgaccgcgtcgccacctacttcgtcaaatggctg 620 Query: 181 ggtggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccg 240 || | |||||| ||||||||||||| || || ||||||| ||||| |||| | || Sbjct: 621 gggcgcagcactttgggcctatcctatgggcttgccatcagcgaggctctcatctcccct 680 Query: 241 gccatgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcgctg 300 |||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 681 gccatgcccagcaccacggccagggctggaggtgttttccttcccatcgtcaagtcgcta 740 Query: 301 tcgctatcggccggcagcaagccgaatgatccatcagcgaagaagctgggtgcctacctt 360 ||||| || |||| |||||||| || |||||||| |||||||| || || | || ||| Sbjct: 741 tcgctctcatccggaagcaagcccaacgatccatcggcgaagaaactcggctcttatctt 800 Query: 361 gtgcagtctcagctgcaggcatctggcaactccagtgctctctttttgaccgctgctgcg 420 ||||| || ||| | |||||| ||| |||||||||||||| || ||||| || ||||| Sbjct: 801 gtgcaatcgcagttacaggcagctgcgaactccagtgctctattcttgacagcagctgca 860 Query: 421 cagaatctcctgtgtttgaagttagcggaggag 453 ||||| || ||||| |||||||||| |||||| Sbjct: 861 cagaacctgttgtgtctgaagttagcagaggag 893
>ref|XM_450963.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1653 Score = 266 bits (134), Expect = 6e-68 Identities = 224/254 (88%) Strand = Plus / Plus Query: 73 ttcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgggggttcgtc 132 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 469 ttcaccaacgaggtcatctggctcatcgtcatctccttcttcttcgcgagggggttcgtc 528 Query: 133 aagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggtggaagcact 192 |||||||| ||||||||||| | ||||||||||||||||||||| | || || ||||| Sbjct: 529 aagaccggtctcggcgaccgtatcgccacctacttcgtcaagtggctcgggggcagcacg 588 Query: 193 ctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggccatgcccagc 252 ||||| || ||||| || ||||||||||| ||||| | |||| ||||||||||||||||| Sbjct: 589 ctggggctgtcctatgggctcaccatcagcgaggcgttcatctcgccggccatgcccagc 648 Query: 253 accacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcgctatcggcc 312 ||||| |||||||| ||||| |||||||| ||||| |||||||||| ||||| ||||| Sbjct: 649 accaccgcgagggccggaggcgtgttcctgcccatcatcaagtcgctctcgctctcggca 708 Query: 313 ggcagcaagccgaa 326 || ||||||||||| Sbjct: 709 gggagcaagccgaa 722
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 266 bits (134), Expect = 6e-68 Identities = 224/254 (88%) Strand = Plus / Plus Query: 73 ttcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgggggttcgtc 132 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 17827692 ttcaccaacgaggtcatctggctcatcgtcatctccttcttcttcgcgagggggttcgtc 17827751 Query: 133 aagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggtggaagcact 192 |||||||| ||||||||||| | ||||||||||||||||||||| | || || ||||| Sbjct: 17827752 aagaccggtctcggcgaccgtatcgccacctacttcgtcaagtggctcgggggcagcacg 17827811 Query: 193 ctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggccatgcccagc 252 ||||| || ||||| || ||||||||||| ||||| | |||| ||||||||||||||||| Sbjct: 17827812 ctggggctgtcctatgggctcaccatcagcgaggcgttcatctcgccggccatgcccagc 17827871 Query: 253 accacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcgctatcggcc 312 ||||| |||||||| ||||| |||||||| ||||| |||||||||| ||||| ||||| Sbjct: 17827872 accaccgcgagggccggaggcgtgttcctgcccatcatcaagtcgctctcgctctcggca 17827931 Query: 313 ggcagcaagccgaa 326 || ||||||||||| Sbjct: 17827932 gggagcaagccgaa 17827945 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tcatcgtcatctccttcttc 114 |||||||||||||||||||| Sbjct: 17200658 tcatcgtcatctccttcttc 17200639
>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1595_D08 Length = 116351 Score = 266 bits (134), Expect = 6e-68 Identities = 224/254 (88%) Strand = Plus / Plus Query: 73 ttcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgggggttcgtc 132 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 68336 ttcaccaacgaggtcatctggctcatcgtcatctccttcttcttcgcgagggggttcgtc 68395 Query: 133 aagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggtggaagcact 192 |||||||| ||||||||||| | ||||||||||||||||||||| | || || ||||| Sbjct: 68396 aagaccggtctcggcgaccgtatcgccacctacttcgtcaagtggctcgggggcagcacg 68455 Query: 193 ctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggccatgcccagc 252 ||||| || ||||| || ||||||||||| ||||| | |||| ||||||||||||||||| Sbjct: 68456 ctggggctgtcctatgggctcaccatcagcgaggcgttcatctcgccggccatgcccagc 68515 Query: 253 accacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcgctatcggcc 312 ||||| |||||||| ||||| |||||||| ||||| |||||||||| ||||| ||||| Sbjct: 68516 accaccgcgagggccggaggcgtgttcctgcccatcatcaagtcgctctcgctctcggca 68575 Query: 313 ggcagcaagccgaa 326 || ||||||||||| Sbjct: 68576 gggagcaagccgaa 68589
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 266 bits (134), Expect = 6e-68 Identities = 224/254 (88%) Strand = Plus / Plus Query: 73 ttcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgggggttcgtc 132 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 136326 ttcaccaacgaggtcatctggctcatcgtcatctccttcttcttcgcgagggggttcgtc 136385 Query: 133 aagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggtggaagcact 192 |||||||| ||||||||||| | ||||||||||||||||||||| | || || ||||| Sbjct: 136386 aagaccggtctcggcgaccgtatcgccacctacttcgtcaagtggctcgggggcagcacg 136445 Query: 193 ctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggccatgcccagc 252 ||||| || ||||| || ||||||||||| ||||| | |||| ||||||||||||||||| Sbjct: 136446 ctggggctgtcctatgggctcaccatcagcgaggcgttcatctcgccggccatgcccagc 136505 Query: 253 accacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcgctatcggcc 312 ||||| |||||||| ||||| |||||||| ||||| |||||||||| ||||| ||||| Sbjct: 136506 accaccgcgagggccggaggcgtgttcctgcccatcatcaagtcgctctcgctctcggca 136565 Query: 313 ggcagcaagccgaa 326 || ||||||||||| Sbjct: 136566 gggagcaagccgaa 136579
>dbj|AB112937.1| Zea mays ZmpDCT1 mRNA for plastidic general dicarboxylate transporter, complete cds Length = 2109 Score = 262 bits (132), Expect = 1e-66 Identities = 264/308 (85%) Strand = Plus / Plus Query: 4 tgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcggcg 63 ||||| |||||||| ||||| || |||| ||||| | |||||||| ||||| || || Sbjct: 443 tgggccttcctcgggctcacagccgccgtcgccactcgcacgctccccttcaccgccgcc 502 Query: 64 ttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgg 123 ||| || |||||||||||||||||||||||||||||||| ||||||||||| || || Sbjct: 503 ttctccgccttcaccaacgaggtcatctggctcatcgtcatttccttcttcttcgcgcgc 562 Query: 124 gggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggt 183 |||||||||||||| |||||||||||||| | ||||||||||||||||||||| | || Sbjct: 563 gggttcgtcaagacgggcctcggcgaccgaatcgccacctacttcgtcaagtggctcggg 622 Query: 184 ggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggcc 243 | ||||| |||||||| |||||||| || ||| |||| ||||| ||||||||||||||| Sbjct: 623 agcagcacgctgggcctttcctacgggcttaccctcagcgaggcctgcatcgcgccggcc 682 Query: 244 atgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcgctgtcg 303 ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| ||| Sbjct: 683 atgcccagcaccacggcgagggccggaggcgtgttcctacccatcatcaagtcgctctcg 742 Query: 304 ctatcggc 311 || ||||| Sbjct: 743 ctgtcggc 750
>gb|AY123844.1| Sorghum bicolor glutamate/malate translocator (DiT1) mRNA, complete cds; nuclear gene for plastid product Length = 2088 Score = 190 bits (96), Expect = 3e-45 Identities = 213/252 (84%) Strand = Plus / Plus Query: 4 tgggcattcctcggcctcactgctaccgtggccacgggtacgctcccgttcacggcggcg 63 ||||| |||||||||||||| || |||| |||||| |||||||| ||| | || || Sbjct: 472 tgggctttcctcggcctcacggccgccgtcgccacgcacacgctccccttcgccgccgcc 531 Query: 64 ttcggggcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgg 123 |||| || |||||||||||| ||||||||||||||||||||||||||||||| || || Sbjct: 532 ttcgccgccttcaccaacgagatcatctggctcatcgtcatctccttcttcttcgcgcgc 591 Query: 124 gggttcgtcaagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttgggt 183 || ||||||||||| ||||||||||||||||| ||||||||||||||||||||| | || Sbjct: 592 ggcttcgtcaagacgggcctcggcgaccgcgtcgccacctacttcgtcaagtggctcggc 651 Query: 184 ggaagcactctgggcctatcctacggtctcaccatcagtgaggcatgcatcgcgccggcc 243 ||||| ||||| || |||||||| ||| || || | ||||| ||||| ||||||||| Sbjct: 652 aagagcacgctggggctgtcctacgggctcgccctcggcgaggcctgcatagcgccggcc 711 Query: 244 atgcccagcacc 255 |||||||||||| Sbjct: 712 atgcccagcacc 723
>gb|AY123846.1| Spinacia oleracea glutamate/malate translocator (DiT1) mRNA, complete cds; nuclear gene for plastid product Length = 1926 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 73 ttcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgggggttcgtc 132 |||||||| || |||||||||||||||||||||||||| ||||| || || || |||||| Sbjct: 534 ttcaccaatgaagtcatctggctcatcgtcatctcctttttcttcgcccgtggtttcgtc 593 Query: 133 aagaccggcctcggcgaccgcgttgccacctacttcgtcaagtggttggg 182 |||||||| |||||||| ||| ||||||||||||| |||||||||||||| Sbjct: 594 aagaccggtctcggcgatcgcattgccacctactttgtcaagtggttggg 643
>dbj|AB112936.1| Zea mays ZmpOMT1 mRNA for plastidic 2-oxoglutarate/malate transporter, complete cds Length = 1907 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 90 ctggctcatcgtcatctccttcttctttgcacgggggttcgtcaagaccggcctcggc 147 ||||||||||| || |||||||||| || |||||||| ||||||||||||||||| Sbjct: 595 ctggctcatcgcgctcgccttcttcttcgcgagggggttcatcaagaccggcctcggc 652
>gb|AY123845.1| Flaveria bidentis glutamate/malate translocator (DiT2) mRNA, complete cds; nuclear gene for plastid product Length = 1959 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 70 gcattcaccaacgaggtcatctggctcatcgtcatctccttcttctttgcacgggggttc 129 ||||||||||| || ||||||||| | ||||| ||||| ||||| || || || |||||| Sbjct: 643 gcattcaccaatgaagtcatctggttgatcgtgatctcgttctttttcgctcgtgggttc 702 Query: 130 gtcaagac 137 || ||||| Sbjct: 703 gtgaagac 710 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 238 ccggccatgcccagcaccacggcgagggctggaggggtgttccttcccattgtcaagtcg 297 ||||| |||||||||||||| || ||||| || || ||||| | |||||| |||||||| Sbjct: 811 ccggcgatgcccagcaccaccgctagggccggtggtgtgtttttgcccattatcaagtcg 870 Query: 298 ctgtcgctatc 308 ||||| |||| Sbjct: 871 ttgtcgttatc 881
>ref|XM_393735.2| PREDICTED: Apis mellifera similar to vrille (LOC410253), mRNA Length = 1215 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 48 cccgttcacggcggcgttcgggg 70 ||||||||||||||||||||||| Sbjct: 1209 cccgttcacggcggcgttcgggg 1187
>dbj|AB190775.1| Mesembryanthemum crystallinum DCT1 mRNA for putative plastidic 2-oxoglutarate/malate translocator, partial cds Length = 1719 Score = 44.1 bits (22), Expect = 0.44 Identities = 58/70 (82%) Strand = Plus / Plus Query: 90 ctggctcatcgtcatctccttcttctttgcacgggggttcgtcaagaccggcctcggcga 149 ||||||||||| | || |||||||||| || || || ||| |||| |||||||| ||| | Sbjct: 117 ctggctcatcgccctcgccttcttcttcgcccgaggattcatcaaaaccggcctgggcaa 176 Query: 150 ccgcgttgcc 159 |||| ||||| Sbjct: 177 ccgcattgcc 186
>emb|AL590427.15| Human DNA sequence from clone RP11-396N10 on chromosome 1 Contains the 5' end of the NTNG1 gene for netrin G1 and a CpG island, complete sequence Length = 160135 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 ggtgtcaaaattgcaagccct 477 ||||||||||||||||||||| Sbjct: 57029 ggtgtcaaaattgcaagccct 57049
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 235 gcgccggccatgcccagcaccacgg 259 |||||||| |||||||||||||||| Sbjct: 3089690 gcgccggcgatgcccagcaccacgg 3089714
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 atcgcgccggccatgcccagc 252 ||||||||||||||||||||| Sbjct: 989618 atcgcgccggccatgcccagc 989638
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 tggctcatcgtcatctccttc 111 ||||||||||||||||||||| Sbjct: 3387259 tggctcatcgtcatctccttc 3387279
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 gcgccggccatgcccagcacc 255 ||||||||||||||||||||| Sbjct: 4040345 gcgccggccatgcccagcacc 4040325
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 cgttcacggcggcgttcggg 69 |||||||||||||||||||| Sbjct: 3274573 cgttcacggcggcgttcggg 3274554
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 238 ccggccatgcccagcaccacggcgaggg 265 |||||||||||||||| |||||| |||| Sbjct: 2913519 ccggccatgcccagcagcacggcaaggg 2913546
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 107 ccttcttctttgcacgggggttcgtcaagaccggcctcgg 146 |||||||||| || || || ||| |||||||||||||||| Sbjct: 20046719 ccttcttcttcgcccgcggcttcatcaagaccggcctcgg 20046758
>gb|AC084609.1|CBRG44B02 Caenorhabditis briggsae cosmid G44B02, complete sequence Length = 43094 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tcatcgtcatctccttcttc 114 |||||||||||||||||||| Sbjct: 31594 tcatcgtcatctccttcttc 31575
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 cgctcccgttcacggcggcg 63 |||||||||||||||||||| Sbjct: 2370027 cgctcccgttcacggcggcg 2370008
>gb|AE004887.1| Pseudomonas aeruginosa PAO1, section 448 of 529 of the complete genome Length = 10139 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 tcaagaccggcctcggcgaccgcg 154 ||||||||||||||||| |||||| Sbjct: 7026 tcaagaccggcctcggcaaccgcg 7049
>gb|AE004778.1| Pseudomonas aeruginosa PAO1, section 339 of 529 of the complete genome Length = 11589 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgccggccatgcccagcacc 255 |||||||||||||||||||| Sbjct: 10167 cgccggccatgcccagcacc 10186
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 aagaagctgggtgcctacct 359 |||||||||||||||||||| Sbjct: 1207330 aagaagctgggtgcctacct 1207349
>dbj|AP006057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1342C04 Length = 172097 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tcatcgtcatctccttcttc 114 |||||||||||||||||||| Sbjct: 141415 tcatcgtcatctccttcttc 141396
>dbj|AK099798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097M20, full insert sequence Length = 1962 Score = 40.1 bits (20), Expect = 6.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 107 ccttcttctttgcacgggggttcgtcaagaccggcctcgg 146 |||||||||| || || || ||| |||||||||||||||| Sbjct: 538 ccttcttcttcgcccgcggcttcatcaagaccggcctcgg 577
>gb|AC154327.2| Mus musculus BAC clone RP23-289N10 from 14, complete sequence Length = 161835 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 atcatggttcaaggttgcaa 502 |||||||||||||||||||| Sbjct: 80424 atcatggttcaaggttgcaa 80443
>dbj|AK061957.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F09, full insert sequence Length = 1506 Score = 40.1 bits (20), Expect = 6.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 107 ccttcttctttgcacgggggttcgtcaagaccggcctcgg 146 |||||||||| || || || ||| |||||||||||||||| Sbjct: 146 ccttcttcttcgcccgcggcttcatcaagaccggcctcgg 185
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 107 ccttcttctttgcacgggggttcgtcaagaccggcctcgg 146 |||||||||| || || || ||| |||||||||||||||| Sbjct: 19972933 ccttcttcttcgcccgcggcttcatcaagaccggcctcgg 19972972
>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 99791 Score = 40.1 bits (20), Expect = 6.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 107 ccttcttctttgcacgggggttcgtcaagaccggcctcgg 146 |||||||||| || || || ||| |||||||||||||||| Sbjct: 26881 ccttcttcttcgcccgcggcttcatcaagaccggcctcgg 26920 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,815,141 Number of Sequences: 3902068 Number of extensions: 3815141 Number of successful extensions: 73473 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72761 Number of HSP's gapped (non-prelim): 711 length of query: 507 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 485 effective length of database: 17,147,199,772 effective search space: 8316391889420 effective search space used: 8316391889420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)