ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags21l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYO10_BOVIN (P79114) Myosin-10 (Myosin X) 30 5.2
2GLMM_PSEPK (Q88DV3) Phosphoglucosamine mutase (EC 5.4.2.10) 30 5.2
3MYO10_HUMAN (Q9HD67) Myosin-10 (Myosin X) 30 5.2

>MYO10_BOVIN (P79114) Myosin-10 (Myosin X)|
          Length = 2052

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 350  PLPRADGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVG 469
            P+P   G +  G  LRP   +   Q ++Q  ++P  G VG
Sbjct: 1579 PIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVG 1618



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>GLMM_PSEPK (Q88DV3) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 446

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
 Frame = +2

Query: 284 FKEMLEAQKKAALENEMPVGPMPLP---------RADGHISYGGALRPGEGDAIAQYVQQ 436
           F+  LEA   AA  + M +GPMP P          A+  I    +  P + + I  +  Q
Sbjct: 57  FESALEAGLSAAGADVMLLGPMPTPAIAYLTRTFHAEAGIVISASHNPHDDNGIKFFSGQ 116

Query: 437 GKRIPRRGEVGLSADEI 487
           G ++P   EV L  +E+
Sbjct: 117 GTKLP--DEVELMIEEL 131



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>MYO10_HUMAN (Q9HD67) Myosin-10 (Myosin X)|
          Length = 2058

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 350  PLPRADGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVG 469
            P+P   G +  G  LRP   +   Q ++Q  ++P  G VG
Sbjct: 1585 PIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVG 1624


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,349,688
Number of Sequences: 219361
Number of extensions: 764308
Number of successful extensions: 2054
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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