ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags21j01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550362.1| Oryza sativa (japonica cultivar-group), mRNA Length = 7053 Score = 505 bits (255), Expect = e-140 Identities = 433/494 (87%) Strand = Plus / Plus Query: 19 gcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagt 78 |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 6166 gcagttactacaaggacgaccaatgtgcatggagatgagctcatcatcacaacgaccagt 6225 Query: 79 ccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgct 138 |||||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct: 6226 ccatacgagcaacaagcatttgcatcaaagactgattggcgtgttagggctatctctgcc 6285 Query: 139 acaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagact 198 |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 6286 acaaacttgtatcttcgtgtcaatcacatttatgttaactcagatgatataaaggagact 6345 Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatcta 258 ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| || Sbjct: 6346 ggctacacttacattatgccaaagaatatattaaagaagttcatatgcatagcagattta 6405 Query: 259 cggacacaggttgcaggtttcctgtatggactgagtccacaggataatccccaagtcaag 318 |||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| || Sbjct: 6406 aggacacagattgcagggtttctgtatgggctgagcccacaggataatccccaagttaaa 6465 Query: 319 gagatcaggtgcatatccattcccccacagnatggaactcaccagatggtgactctgcca 378 |||||||| |||||| | ||||| || ||| | |||||||| ||||||||||| ||||| Sbjct: 6466 gagatcagatgcatagctattcctccgcagcacggaactcatcagatggtgacactgcct 6525 Query: 379 gcgaatctaccagagcatgagttcctngnggacttggagccattgggatggatgcatacc 438 || || || || ||||| |||||||| || ||||||||| ||||||||||||||||| Sbjct: 6526 gcaaaccttcccgagcacgagttccttaatgatttggagccactgggatggatgcatacc 6585 Query: 439 canccgaatgaagctcctcagctatcacctcaggacttgacatcacattccaagattttg 498 || || ||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||| Sbjct: 6586 caaccaaatgaagctcctcagctatcaccacaggatttgacatcacatgccaagatcttg 6645 Query: 499 gagaacaacaagca 512 |||||||||||||| Sbjct: 6646 gagaacaacaagca 6659
>dbj|AK099780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095K10, full insert sequence Length = 3618 Score = 505 bits (255), Expect = e-140 Identities = 433/494 (87%) Strand = Plus / Plus Query: 19 gcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagt 78 |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 2507 gcagttactacaaggacgaccaatgtgcatggagatgagctcatcatcacaacgaccagt 2566 Query: 79 ccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgct 138 |||||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct: 2567 ccatacgagcaacaagcatttgcatcaaagactgattggcgtgttagggctatctctgcc 2626 Query: 139 acaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagact 198 |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2627 acaaacttgtatcttcgtgtcaatcacatttatgttaactcagatgatataaaggagact 2686 Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatcta 258 ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| || Sbjct: 2687 ggctacacttacattatgccaaagaatatattaaagaagttcatatgcatagcagattta 2746 Query: 259 cggacacaggttgcaggtttcctgtatggactgagtccacaggataatccccaagtcaag 318 |||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| || Sbjct: 2747 aggacacagattgcagggtttctgtatgggctgagcccacaggataatccccaagttaaa 2806 Query: 319 gagatcaggtgcatatccattcccccacagnatggaactcaccagatggtgactctgcca 378 |||||||| |||||| | ||||| || ||| | |||||||| ||||||||||| ||||| Sbjct: 2807 gagatcagatgcatagctattcctccgcagcacggaactcatcagatggtgacactgcct 2866 Query: 379 gcgaatctaccagagcatgagttcctngnggacttggagccattgggatggatgcatacc 438 || || || || ||||| |||||||| || ||||||||| ||||||||||||||||| Sbjct: 2867 gcaaaccttcccgagcacgagttccttaatgatttggagccactgggatggatgcatacc 2926 Query: 439 canccgaatgaagctcctcagctatcacctcaggacttgacatcacattccaagattttg 498 || || ||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||| Sbjct: 2927 caaccaaatgaagctcctcagctatcaccacaggatttgacatcacatgccaagatcttg 2986 Query: 499 gagaacaacaagca 512 |||||||||||||| Sbjct: 2987 gagaacaacaagca 3000
>dbj|AK066230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057K01, full insert sequence Length = 2182 Score = 505 bits (255), Expect = e-140 Identities = 433/494 (87%) Strand = Plus / Plus Query: 19 gcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagt 78 |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 1023 gcagttactacaaggacgaccaatgtgcatggagatgagctcatcatcacaacgaccagt 1082 Query: 79 ccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgct 138 |||||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct: 1083 ccatacgagcaacaagcatttgcatcaaagactgattggcgtgttagggctatctctgcc 1142 Query: 139 acaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagact 198 |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1143 acaaacttgtatcttcgtgtcaatcacatttatgttaactcagatgatataaaggagact 1202 Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatcta 258 ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| || Sbjct: 1203 ggctacacttacattatgccaaagaatatattaaagaagttcatatgcatagcagattta 1262 Query: 259 cggacacaggttgcaggtttcctgtatggactgagtccacaggataatccccaagtcaag 318 |||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| || Sbjct: 1263 aggacacagattgcagggtttctgtatgggctgagcccacaggataatccccaagttaaa 1322 Query: 319 gagatcaggtgcatatccattcccccacagnatggaactcaccagatggtgactctgcca 378 |||||||| |||||| | ||||| || ||| | |||||||| ||||||||||| ||||| Sbjct: 1323 gagatcagatgcatagctattcctccgcagcacggaactcatcagatggtgacactgcct 1382 Query: 379 gcgaatctaccagagcatgagttcctngnggacttggagccattgggatggatgcatacc 438 || || || || ||||| |||||||| || ||||||||| ||||||||||||||||| Sbjct: 1383 gcaaaccttcccgagcacgagttccttaatgatttggagccactgggatggatgcatacc 1442 Query: 439 canccgaatgaagctcctcagctatcacctcaggacttgacatcacattccaagattttg 498 || || ||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||| Sbjct: 1443 caaccaaatgaagctcctcagctatcaccacaggatttgacatcacatgccaagatcttg 1502 Query: 499 gagaacaacaagca 512 |||||||||||||| Sbjct: 1503 gagaacaacaagca 1516
>dbj|AK062042.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A05, full insert sequence Length = 1339 Score = 505 bits (255), Expect = e-140 Identities = 433/494 (87%) Strand = Plus / Plus Query: 19 gcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagt 78 |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 180 gcagttactacaaggacgaccaatgtgcatggagatgagctcatcatcacaacgaccagt 239 Query: 79 ccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgct 138 |||||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct: 240 ccatacgagcaacaagcatttgcatcaaagactgattggcgtgttagggctatctctgcc 299 Query: 139 acaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagact 198 |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 300 acaaacttgtatcttcgtgtcaatcacatttatgttaactcagatgatataaaggagact 359 Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatcta 258 ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| || Sbjct: 360 ggctacacttacattatgccaaagaatatattaaagaagttcatatgcatagcagattta 419 Query: 259 cggacacaggttgcaggtttcctgtatggactgagtccacaggataatccccaagtcaag 318 |||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| || Sbjct: 420 aggacacagattgcagggtttctgtatgggctgagcccacaggataatccccaagttaaa 479 Query: 319 gagatcaggtgcatatccattcccccacagnatggaactcaccagatggtgactctgcca 378 |||||||| |||||| | ||||| || ||| | |||||||| ||||||||||| ||||| Sbjct: 480 gagatcagatgcatagctattcctccgcagcacggaactcatcagatggtgacactgcct 539 Query: 379 gcgaatctaccagagcatgagttcctngnggacttggagccattgggatggatgcatacc 438 || || || || ||||| |||||||| || ||||||||| ||||||||||||||||| Sbjct: 540 gcaaaccttcccgagcacgagttccttaatgatttggagccactgggatggatgcatacc 599 Query: 439 canccgaatgaagctcctcagctatcacctcaggacttgacatcacattccaagattttg 498 || || ||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||| Sbjct: 600 caaccaaatgaagctcctcagctatcaccacaggatttgacatcacatgccaagatcttg 659 Query: 499 gagaacaacaagca 512 |||||||||||||| Sbjct: 660 gagaacaacaagca 673
>dbj|AK065529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031D19, full insert sequence Length = 2204 Score = 498 bits (251), Expect = e-137 Identities = 432/494 (87%) Strand = Plus / Plus Query: 19 gcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagt 78 |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 1034 gcagttactacaaggacgaccaatgtgcatggagatgagctcatcatcacaacgaccagt 1093 Query: 79 ccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgct 138 |||||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct: 1094 ccatacgagcaacaagcatttgcatcaaagactgattggcgtgttagggctatctctgcc 1153 Query: 139 acaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagact 198 |||||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||| Sbjct: 1154 acaaacttgtatcttcgtgtcaatcacatttatgttaactcagatggtataaaggagact 1213 Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatcta 258 ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| || Sbjct: 1214 ggctacacttacattatgccaaagaatatattaaagaagttcatatgcatagcagattta 1273 Query: 259 cggacacaggttgcaggtttcctgtatggactgagtccacaggataatccccaagtcaag 318 |||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| || Sbjct: 1274 aggacacagattgcagggtttctgtatgggctgagcccacaggataatccccaagttaaa 1333 Query: 319 gagatcaggtgcatatccattcccccacagnatggaactcaccagatggtgactctgcca 378 |||||||| |||||| | ||||| || ||| | |||||||| ||||||||||| ||||| Sbjct: 1334 gagatcagatgcatagctattcctccgcagcacggaactcatcagatggtgacactgcct 1393 Query: 379 gcgaatctaccagagcatgagttcctngnggacttggagccattgggatggatgcatacc 438 || || || || ||||| |||||||| || ||||||||| ||||||||||||||||| Sbjct: 1394 gcaaaccttcccgagcacgagttccttaatgatttggagccactgggatggatgcatacc 1453 Query: 439 canccgaatgaagctcctcagctatcacctcaggacttgacatcacattccaagattttg 498 || || ||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||| Sbjct: 1454 caaccaaatgaagctcctcagctatcaccacaggatttgacatcacatgccaagatcttg 1513 Query: 499 gagaacaacaagca 512 |||||||||||||| Sbjct: 1514 gagaacaacaagca 1527
>ref|XM_475644.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 7053 Score = 476 bits (240), Expect = e-131 Identities = 430/495 (86%) Strand = Plus / Plus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 ||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 6165 tgcagttactacaaggacaaccaatgtgcatggagatgagctcatcatcacgacgaccag 6224 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgc 137 ||| || |||||| ||||||||| || || || ||||| |||||||||||||||||||| Sbjct: 6225 tccgtatgagcaacaagcatttgcatcaaagactgattggcgtgtcagggccatctctgc 6284 Query: 138 tacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagac 197 || ||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||| Sbjct: 6285 cacgaacttgtatcttcgtgttaatcacatttatgttaattcagatgatataaaggagac 6344 Query: 198 tggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatct 257 |||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| | Sbjct: 6345 tggctacacttacattatgccgaagaatatattaaagaagttcatatgcatagcagattt 6404 Query: 258 acggacacaggttgcaggtttcctgtatggactgagtccacaggataatccccaagtcaa 317 | |||||||| |||||||||| || ||||| ||||||||||||||||| |||||||| || Sbjct: 6405 aaggacacagattgcaggttttctatatgggctgagtccacaggataacccccaagttaa 6464 Query: 318 ggagatcaggtgcatatccattcccccacagnatggaactcaccagatggtgactctgcc 377 |||||||| |||||| | ||||| |||||| | |||||||| ||||||||||| ||||| Sbjct: 6465 agagatcagatgcatagctattcctccacagcacggaactcatcagatggtgacactgcc 6524 Query: 378 agcgaatctaccagagcatgagttcctngnggacttggagccattgggatggatgcatac 437 || || || || ||||| |||||||| || ||||||||| |||| ||||||||||| Sbjct: 6525 tgcaaaccttcctgagcacgagttccttaatgatttggagccactgggctggatgcatac 6584 Query: 438 ccanccgaatgaagctcctcagctatcacctcaggacttgacatcacattccaagatttt 497 ||| || ||||||||||| ||||||||||| ||||| |||||||| || ||||||| || Sbjct: 6585 ccagcctaatgaagctccccagctatcaccacaggatttgacatcgcacgccaagatctt 6644 Query: 498 ggagaacaacaagca 512 ||||||||||||||| Sbjct: 6645 ggagaacaacaagca 6659
>gb|AY104169.1| Zea mays PCO099315 mRNA sequence Length = 1640 Score = 391 bits (197), Expect = e-105 Identities = 423/500 (84%) Strand = Plus / Plus Query: 10 cagttaaatgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacg 69 ||||||| ||| || || |||||||| || |||||||| || ||||||||||||||||| Sbjct: 510 cagttaactgctgtaaccacaaggacgacgaatgtgcacggagatgaactcattatcaca 569 Query: 70 acaaccagtccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggcc 129 || || |||||||| |||||| |||||| || ||||| || ||||| |||||||| ||| Sbjct: 570 accacaagtccatatgagcaacaagcattcgcatcgaagactgattggcgtgtcagagcc 629 Query: 130 atctctgctacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatata 189 |||||||| |||||||| ||||| ||||| || ||||||||||| || || ||||||||| Sbjct: 630 atctctgccacaaacttgtatctacgtgtaaatcacatttatgtcaattctgatgatata 689 Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 ||||| |||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||| Sbjct: 690 aaggaaactggctacacttacattatgccaaagaacatattgaagaaattcatatgcata 749 Query: 250 gcagatctacggacacaggttgcaggtttcctgtatggactgagtccacaggataatccc 309 |||||||| || ||||| | || || ||| | ||||| |||||||||||||| ||||| Sbjct: 750 gcagatctgcgtacacaaatcgctggattcttatatgggctgagtccacaggacaatcct 809 Query: 310 caagtcaaggagatcaggtgcatatccattcccccacagnatggaactcaccagatggtg 369 |||||||| ||||| ||||| ||| |||| || || ||| ||||||| |||||||||||| Sbjct: 810 caagtcaaagagattaggtgtatagccatccctccgcagcatggaacacaccagatggtg 869 Query: 370 actctgccagcgaatctaccagagcatgagttcctngnggacttggagccattgggatgg 429 ||||||||| | ||||| || || ||||||||||| || | || || ||||||||| Sbjct: 870 actctgccatcaaatcttcctgaacatgagttccttaatgatcttgaacccttgggatgg 929 Query: 430 atgcatacccanccgaatgaagctcctcagctatcacctcaggacttgacatcacattcc 489 |||||||| || || ||||||||||| ||||||||||| |||||| ||||||||||| || Sbjct: 930 atgcatacacagccaaatgaagctccacagctatcaccacaggacctgacatcacatgcc 989 Query: 490 aagattttggagaacaacaa 509 |||||| ||||||||||||| Sbjct: 990 aagattctggagaacaacaa 1009
>gb|BT024006.1| Zea mays clone EL01N0311H08 mRNA sequence Length = 1486 Score = 383 bits (193), Expect = e-103 Identities = 422/500 (84%) Strand = Plus / Plus Query: 10 cagttaaatgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacg 69 ||||||| ||| || || |||||||| || |||||||| || ||||||||||||||||| Sbjct: 357 cagttaactgctgtaaccacaaggacgacgaatgtgcacggagatgaactcattatcaca 416 Query: 70 acaaccagtccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggcc 129 || || |||||||| |||||| |||||| || ||||| || ||||| |||||||| ||| Sbjct: 417 accacaagtccatatgagcaacaagcattcgcatcgaagactgattggcgtgtcagagcc 476 Query: 130 atctctgctacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatata 189 |||||||| |||||||| ||||| ||||| || ||||||||||| || || ||||||||| Sbjct: 477 atctctgccacaaacttgtatctacgtgtaaatcacatttatgtcaattctgatgatata 536 Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 ||||| |||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||| Sbjct: 537 aaggaaactggctacacttacattatgccaaagaacatattgaagaaattcatatgcata 596 Query: 250 gcagatctacggacacaggttgcaggtttcctgtatggactgagtccacaggataatccc 309 |||||||| || ||||| | || || ||| | ||||| |||||||||||||| ||||| Sbjct: 597 gcagatctgcgtacacaaatcgctggattcttatatgggctgagtccacaggacaatcct 656 Query: 310 caagtcaaggagatcaggtgcatatccattcccccacagnatggaactcaccagatggtg 369 |||||||| ||||| ||||| ||| |||| || || ||| ||||||| |||||||||||| Sbjct: 657 caagtcaaagagattaggtgtatagccatccctccgcagcatggaacacaccagatggtg 716 Query: 370 actctgccagcgaatctaccagagcatgagttcctngnggacttggagccattgggatgg 429 ||||||||| | ||||| || || ||||||||||| || | || || ||||||||| Sbjct: 717 actctgccatcaaatcttcctgaacatgagttccttaatgatcttgaacccttgggatgg 776 Query: 430 atgcatacccanccgaatgaagctcctcagctatcacctcaggacttgacatcacattcc 489 |||||||| || || ||||||||||| |||||||| || |||||| ||||||||||| || Sbjct: 777 atgcatacacaaccaaatgaagctccacagctatcgccacaggacctgacatcacatgcc 836 Query: 490 aagattttggagaacaacaa 509 |||||| ||||||||||||| Sbjct: 837 aagattctggagaacaacaa 856
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 274 bits (138), Expect = 3e-70 Identities = 245/282 (86%) Strand = Plus / Minus Query: 191 aggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatag 250 ||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 3364100 aggagactggctacacttacattatgccaaagaatatattaaagaagttcatatgcatag 3364041 Query: 251 cagatctacggacacaggttgcaggtttcctgtatggactgagtccacaggataatcccc 310 ||||| || |||||||| ||||||| || |||||||| ||||| |||||||||||||||| Sbjct: 3364040 cagatttaaggacacagattgcagggtttctgtatgggctgagcccacaggataatcccc 3363981 Query: 311 aagtcaaggagatcaggtgcatatccattcccccacagnatggaactcaccagatggtga 370 |||| || |||||||| |||||| | ||||| || ||| | |||||||| |||||||||| Sbjct: 3363980 aagttaaagagatcagatgcatagctattcctccgcagcacggaactcatcagatggtga 3363921 Query: 371 ctctgccagcgaatctaccagagcatgagttcctngnggacttggagccattgggatgga 430 | ||||| || || || || ||||| |||||||| || ||||||||| ||||||||| Sbjct: 3363920 cactgcctgcaaaccttcccgagcacgagttccttaatgatttggagccactgggatgga 3363861 Query: 431 tgcatacccanccgaatgaagctcctcagctatcacctcagg 472 |||||||||| || ||||||||||||||||||||||| |||| Sbjct: 3363860 tgcatacccaaccaaatgaagctcctcagctatcaccacagg 3363819 Score = 182 bits (92), Expect = 8e-43 Identities = 154/175 (88%) Strand = Plus / Minus Query: 19 gcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagt 78 |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 3364362 gcagttactacaaggacgaccaatgtgcatggagatgagctcatcatcacaacgaccagt 3364303 Query: 79 ccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgct 138 |||||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct: 3364302 ccatacgagcaacaagcatttgcatcaaagactgattggcgtgttagggctatctctgcc 3364243 Query: 139 acaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaagg 193 |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 3364242 acaaacttgtatcttcgtgtcaatcacatttatgttaactcagatgatataaagg 3364188 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 469 caggacttgacatcacattccaagattttggagaacaacaagca 512 ||||| |||||||||||| ||||||| ||||||||||||||||| Sbjct: 3363703 caggatttgacatcacatgccaagatcttggagaacaacaagca 3363660
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 274 bits (138), Expect = 3e-70 Identities = 245/282 (86%) Strand = Plus / Minus Query: 191 aggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatag 250 ||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 55654 aggagactggctacacttacattatgccaaagaatatattaaagaagttcatatgcatag 55595 Query: 251 cagatctacggacacaggttgcaggtttcctgtatggactgagtccacaggataatcccc 310 ||||| || |||||||| ||||||| || |||||||| ||||| |||||||||||||||| Sbjct: 55594 cagatttaaggacacagattgcagggtttctgtatgggctgagcccacaggataatcccc 55535 Query: 311 aagtcaaggagatcaggtgcatatccattcccccacagnatggaactcaccagatggtga 370 |||| || |||||||| |||||| | ||||| || ||| | |||||||| |||||||||| Sbjct: 55534 aagttaaagagatcagatgcatagctattcctccgcagcacggaactcatcagatggtga 55475 Query: 371 ctctgccagcgaatctaccagagcatgagttcctngnggacttggagccattgggatgga 430 | ||||| || || || || ||||| |||||||| || ||||||||| ||||||||| Sbjct: 55474 cactgcctgcaaaccttcccgagcacgagttccttaatgatttggagccactgggatgga 55415 Query: 431 tgcatacccanccgaatgaagctcctcagctatcacctcagg 472 |||||||||| || ||||||||||||||||||||||| |||| Sbjct: 55414 tgcatacccaaccaaatgaagctcctcagctatcaccacagg 55373 Score = 182 bits (92), Expect = 8e-43 Identities = 154/175 (88%) Strand = Plus / Minus Query: 19 gcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagt 78 |||||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 55916 gcagttactacaaggacgaccaatgtgcatggagatgagctcatcatcacaacgaccagt 55857 Query: 79 ccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgct 138 |||||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct: 55856 ccatacgagcaacaagcatttgcatcaaagactgattggcgtgttagggctatctctgcc 55797 Query: 139 acaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaagg 193 |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 55796 acaaacttgtatcttcgtgtcaatcacatttatgttaactcagatgatataaagg 55742 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 469 caggacttgacatcacattccaagattttggagaacaacaagca 512 ||||| |||||||||||| ||||||| ||||||||||||||||| Sbjct: 55257 caggatttgacatcacatgccaagatcttggagaacaacaagca 55214
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 266 bits (134), Expect = 6e-68 Identities = 244/282 (86%) Strand = Plus / Minus Query: 191 aggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatag 250 ||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 67586 aggagactggctacacttacattatgccgaagaatatattaaagaagttcatatgcatag 67527 Query: 251 cagatctacggacacaggttgcaggtttcctgtatggactgagtccacaggataatcccc 310 ||||| || |||||||| |||||||||| || ||||| ||||||||||||||||| |||| Sbjct: 67526 cagatttaaggacacagattgcaggttttctatatgggctgagtccacaggataaccccc 67467 Query: 311 aagtcaaggagatcaggtgcatatccattcccccacagnatggaactcaccagatggtga 370 |||| || |||||||| |||||| | ||||| |||||| | |||||||| |||||||||| Sbjct: 67466 aagttaaagagatcagatgcatagctattcctccacagcacggaactcatcagatggtga 67407 Query: 371 ctctgccagcgaatctaccagagcatgagttcctngnggacttggagccattgggatgga 430 | ||||| || || || || ||||| |||||||| || ||||||||| |||| |||| Sbjct: 67406 cactgcctgcaaaccttcctgagcacgagttccttaatgatttggagccactgggctgga 67347 Query: 431 tgcatacccanccgaatgaagctcctcagctatcacctcagg 472 |||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 67346 tgcatacccagcctaatgaagctccccagctatcaccacagg 67305 Score = 176 bits (89), Expect = 5e-41 Identities = 154/176 (87%) Strand = Plus / Minus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 ||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 67849 tgcagttactacaaggacaaccaatgtgcatggagatgagctcatcatcacgacgaccag 67790 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgc 137 ||| || |||||| ||||||||| || || || ||||| |||||||||||||||||||| Sbjct: 67789 tccgtatgagcaacaagcatttgcatcaaagactgattggcgtgtcagggccatctctgc 67730 Query: 138 tacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaagg 193 || ||||| ||||| ||||| || |||||||||||||| |||||||||||||||| Sbjct: 67729 cacgaacttgtatcttcgtgttaatcacatttatgttaattcagatgatataaagg 67674 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 469 caggacttgacatcacattccaagattttggagaacaacaagca 512 ||||| |||||||| || ||||||| ||||||||||||||||| Sbjct: 67215 caggatttgacatcgcacgccaagatcttggagaacaacaagca 67172
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 266 bits (134), Expect = 6e-68 Identities = 244/282 (86%) Strand = Plus / Minus Query: 191 aggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatag 250 ||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 3645239 aggagactggctacacttacattatgccgaagaatatattaaagaagttcatatgcatag 3645180 Query: 251 cagatctacggacacaggttgcaggtttcctgtatggactgagtccacaggataatcccc 310 ||||| || |||||||| |||||||||| || ||||| ||||||||||||||||| |||| Sbjct: 3645179 cagatttaaggacacagattgcaggttttctatatgggctgagtccacaggataaccccc 3645120 Query: 311 aagtcaaggagatcaggtgcatatccattcccccacagnatggaactcaccagatggtga 370 |||| || |||||||| |||||| | ||||| |||||| | |||||||| |||||||||| Sbjct: 3645119 aagttaaagagatcagatgcatagctattcctccacagcacggaactcatcagatggtga 3645060 Query: 371 ctctgccagcgaatctaccagagcatgagttcctngnggacttggagccattgggatgga 430 | ||||| || || || || ||||| |||||||| || ||||||||| |||| |||| Sbjct: 3645059 cactgcctgcaaaccttcctgagcacgagttccttaatgatttggagccactgggctgga 3645000 Query: 431 tgcatacccanccgaatgaagctcctcagctatcacctcagg 472 |||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 3644999 tgcatacccagcctaatgaagctccccagctatcaccacagg 3644958 Score = 176 bits (89), Expect = 5e-41 Identities = 154/176 (87%) Strand = Plus / Minus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 ||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 3645502 tgcagttactacaaggacaaccaatgtgcatggagatgagctcatcatcacgacgaccag 3645443 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgc 137 ||| || |||||| ||||||||| || || || ||||| |||||||||||||||||||| Sbjct: 3645442 tccgtatgagcaacaagcatttgcatcaaagactgattggcgtgtcagggccatctctgc 3645383 Query: 138 tacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaagg 193 || ||||| ||||| ||||| || |||||||||||||| |||||||||||||||| Sbjct: 3645382 cacgaacttgtatcttcgtgttaatcacatttatgttaattcagatgatataaagg 3645327 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Minus Query: 469 caggacttgacatcacattccaagattttggagaacaacaagca 512 ||||| |||||||| || ||||||| ||||||||||||||||| Sbjct: 3644868 caggatttgacatcgcacgccaagatcttggagaacaacaagca 3644825
>ref|NM_120038.3| Arabidopsis thaliana unknown protein AT4G38780 mRNA, complete cds Length = 7060 Score = 121 bits (61), Expect = 2e-24 Identities = 195/240 (81%) Strand = Plus / Plus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 |||||| |||||||| || || ||||| |||||||||||| | |||| ||| || | || Sbjct: 6117 tgcagtcacaacaagaaccacaaatgttcatggtgatgaattgattagcaccaccattag 6176 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgc 137 ||| ||||||||| | ||||| | || |||||||| || ||||| | || || || || Sbjct: 6177 tccgtacgagcaatctgcattcggatccaaaacagactggcgtgtgcgcgcaatttcagc 6236 Query: 138 tacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagac 197 ||| ||| | || ||| | ||||||||||| || || ||||||||||| |||||||| || Sbjct: 6237 tactaacctctacctcagggtcaaccacatctacgtgaactcagatgacataaaggaaac 6296 Query: 198 tggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatct 257 ||| || || ||||||||||| ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 6297 tggatacacctacatcatgccaaagaacatattgaagaagtttatatgcatagcggatct 6356
>ref|XM_415805.1| PREDICTED: Gallus gallus similar to splicing factor Prp8 (LOC417559), mRNA Length = 7356 Score = 113 bits (57), Expect = 6e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 160 aaccacatttatgttaactcagatgatataaaggagactggctatacttacatcatgccc 219 ||||||||||||||| |||||||| |||||||| || |||||||| ||||| | ||| Sbjct: 6484 aaccacatttatgtttcatcagatgacataaaggaaacgggctatacgtacattcttccc 6543 Query: 220 aagaatatattgaagaagttcatatgcatagcagatctacggacacaggttgcaggtttc 279 |||||| | |||||||| ||||| ||||| ||||||| || | ||| ||||||||| | Sbjct: 6544 aagaatgtgttgaagaaattcatctgcatctcagatctgcgagcccagattgcaggttac 6603 Query: 280 ctgtatggactgagtccacaggataatccccaagtcaaggagatcaggtgcat 332 ||||||||| |||| || | |||||||||||||| ||||||||| ||||||| Sbjct: 6604 ctgtatggagtgagccctcctgataatccccaagtgaaggagatccggtgcat 6656
>gb|DQ455359.1| Medicago truncatula cDNA-AFLP fragment BT21M22_296 sequence Length = 286 Score = 107 bits (54), Expect = 4e-20 Identities = 182/225 (80%) Strand = Plus / Plus Query: 25 acaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccagtccatac 84 ||||| ||||| || ||||| || ||||| ||||| ||| | || || || ||||| ||| Sbjct: 51 acaactaggaccacaaatgttcacggtgaagaacttattgtgaccaccactagtccctac 110 Query: 85 gagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgctacaaac 144 ||||||| || ||||| ||||| || ||||| |||||||| || || || || ||||| Sbjct: 111 gagcaaggtgcttttgcttcgaagactgattggcgtgtcagagcaatatcagccacaaat 170 Query: 145 ttatatctccgtgtcaaccacatttatgttaactcagatgatataaaggagactggctat 204 ||||| || || || |||||||| ||||| ||||| || ||||||||||| || |||||| Sbjct: 171 ttataccttcgagtaaaccacatatatgtgaactccgaggatataaaggaaacgggctat 230 Query: 205 acttacatcatgcccaagaatatattgaagaagttcatatgcata 249 || || |||||||| ||||| || ||||| ||||| ||||||||| Sbjct: 231 acctatatcatgccaaagaacattttgaaaaagtttatatgcata 275
>ref|NM_106656.2| Arabidopsis thaliana SUS2 (ABNORMAL SUSPENSOR 2) AT1G80070 (SUS2) mRNA, complete cds Length = 7386 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 157 gtcaaccacatttatgttaactcagatgatataaaggagactggctatacttacatcatg 216 ||||| ||||| ||||| ||||||||||| |||||||| || || || || ||||||||| Sbjct: 6400 gtcaatcacatatatgtgaactcagatgacataaaggaaaccggatacacctacatcatg 6459 Query: 217 cccaagaatatattgaagaagttcatatgc 246 || ||||| || |||||||||||||||||| Sbjct: 6460 ccaaagaacattttgaagaagttcatatgc 6489 Score = 52.0 bits (26), Expect = 0.002 Identities = 85/105 (80%) Strand = Plus / Plus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 |||||| |||||||| || || ||||| ||||||||||| |||||| |||| || || || Sbjct: 6261 tgcagtcacaacaagaactacaaatgttcatggtgatgagctcattgtcaccaccacaag 6320 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgt 122 || ||||||||| | ||||| | || || |||||||| ||||| Sbjct: 6321 cccttacgagcaatctgcattcggttccaagacagattggcgtgt 6365
>gb|AC153129.20| Medicago truncatula clone mth2-103o2, complete sequence Length = 111951 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatcta 258 ||||||||||| |||||||| ||||| || ||||| ||||| ||||||||||||||||| Sbjct: 78910 ggctatacttatatcatgccaaagaacattttgaaaaagtttatatgcatagcagatctt 78851 Query: 259 cggacacag 267 || |||||| Sbjct: 78850 cgaacacag 78842 Score = 52.0 bits (26), Expect = 0.002 Identities = 52/61 (85%) Strand = Plus / Minus Query: 412 ttggagccattgggatggatgcatacccanccgaatgaagctcctcagctatcacctcag 471 |||||||| ||||||||||||||||| || || ||||||| ||| ||| | || |||||| Sbjct: 78697 ttggagcctttgggatggatgcatactcaaccaaatgaagttccgcagttgtcgcctcag 78638 Query: 472 g 472 | Sbjct: 78637 g 78637
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 69.9 bits (35), Expect = 8e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 191 aggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatag 250 |||| ||||| || || ||||||||||| ||||| |||||||||||||| |||||||||| Sbjct: 16477 aggaaactggatacacctacatcatgccaaagaacatattgaagaagtttatatgcatag 16418 Query: 251 cagatct 257 | ||||| Sbjct: 16417 cggatct 16411 Score = 58.0 bits (29), Expect = 3e-05 Identities = 139/176 (78%) Strand = Plus / Minus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 |||||| |||||||| || || ||||| |||||||||||| | |||| ||| || | || Sbjct: 16722 tgcagtcacaacaagaaccacaaatgttcatggtgatgaattgattagcaccaccattag 16663 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgc 137 ||| ||||||||| | ||||| | || |||||||| || ||||| | || || || || Sbjct: 16662 tccgtacgagcaatctgcattcggatccaaaacagactggcgtgtgcgcgcaatttcagc 16603 Query: 138 tacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaagg 193 ||| ||| | || ||| | ||||||||||| || || ||||||||||| ||||||| Sbjct: 16602 tactaacctctacctcagggtcaaccacatctacgtgaactcagatgacataaagg 16547
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 69.9 bits (35), Expect = 8e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 191 aggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatag 250 |||| ||||| || || ||||||||||| ||||| |||||||||||||| |||||||||| Sbjct: 48892 aggaaactggatacacctacatcatgccaaagaacatattgaagaagtttatatgcatag 48833 Query: 251 cagatct 257 | ||||| Sbjct: 48832 cggatct 48826 Score = 58.0 bits (29), Expect = 3e-05 Identities = 139/176 (78%) Strand = Plus / Minus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 |||||| |||||||| || || ||||| |||||||||||| | |||| ||| || | || Sbjct: 49137 tgcagtcacaacaagaaccacaaatgttcatggtgatgaattgattagcaccaccattag 49078 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgc 137 ||| ||||||||| | ||||| | || |||||||| || ||||| | || || || || Sbjct: 49077 tccgtacgagcaatctgcattcggatccaaaacagactggcgtgtgcgcgcaatttcagc 49018 Query: 138 tacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaagg 193 ||| ||| | || ||| | ||||||||||| || || ||||||||||| ||||||| Sbjct: 49017 tactaacctctacctcagggtcaaccacatctacgtgaactcagatgacataaagg 48962
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome IV, complete sequence Length = 94770 Score = 69.9 bits (35), Expect = 8e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 191 aggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatag 250 |||| ||||| || || ||||||||||| ||||| |||||||||||||| |||||||||| Sbjct: 32012 aggaaactggatacacctacatcatgccaaagaacatattgaagaagtttatatgcatag 32071 Query: 251 cagatct 257 | ||||| Sbjct: 32072 cggatct 32078 Score = 58.0 bits (29), Expect = 3e-05 Identities = 139/176 (78%) Strand = Plus / Plus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 |||||| |||||||| || || ||||| |||||||||||| | |||| ||| || | || Sbjct: 31767 tgcagtcacaacaagaaccacaaatgttcatggtgatgaattgattagcaccaccattag 31826 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgtcagggccatctctgc 137 ||| ||||||||| | ||||| | || |||||||| || ||||| | || || || || Sbjct: 31827 tccgtacgagcaatctgcattcggatccaaaacagactggcgtgtgcgcgcaatttcagc 31886 Query: 138 tacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatataaagg 193 ||| ||| | || ||| | ||||||||||| || || ||||||||||| ||||||| Sbjct: 31887 tactaacctctacctcagggtcaaccacatctacgtgaactcagatgacataaagg 31942
>ref|XM_694534.1| PREDICTED: Danio rerio zgc:56504 (zgc:56504), mRNA Length = 9226 Score = 60.0 bits (30), Expect = 7e-06 Identities = 75/90 (83%) Strand = Plus / Plus Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatcta 258 ||||| ||||||||| |||||||||| | ||||||||||||| ||||| ||||||| Sbjct: 6359 ggctacacttacatcctgcccaagaacgttctgaagaagttcatctgcatctcagatctg 6418 Query: 259 cggacacaggttgcaggtttcctgtatgga 288 || | ||| ||||||||| |||||||||| Sbjct: 6419 cgtgctcagattgcaggttacctgtatgga 6448
>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence Length = 116905 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 208 tacatcatgcccaagaatatattgaagaagttcatatgc 246 ||||||||||| ||||| || |||||||||||||||||| Sbjct: 63484 tacatcatgccaaagaacattttgaagaagttcatatgc 63522 Score = 52.0 bits (26), Expect = 0.002 Identities = 85/105 (80%) Strand = Plus / Plus Query: 18 tgcagttacaacaaggacaactaatgtgcatggtgatgaactcattatcacgacaaccag 77 |||||| |||||||| || || ||||| ||||||||||| |||||| |||| || || || Sbjct: 63215 tgcagtcacaacaagaactacaaatgttcatggtgatgagctcattgtcaccaccacaag 63274 Query: 78 tccatacgagcaagcagcatttgcgtcgaaaacagattgncgtgt 122 || ||||||||| | ||||| | || || |||||||| ||||| Sbjct: 63275 cccttacgagcaatctgcattcggttccaagacagattggcgtgt 63319 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 157 gtcaaccacatttatgttaactcagatgatataaagg 193 ||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 63354 gtcaatcacatatatgtgaactcagatgacataaagg 63390
>gb|AC133216.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0049B20, complete sequence Length = 131337 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 428 ggatgcatacccanccgaatgaagctcctcagctatcacctcagg 472 ||||||||||| | | ||||||||||||||||||||||| |||| Sbjct: 55828 ggatgcatacctagacaaatgaagctcctcagctatcaccacagg 55784
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 428 ggatgcatacccanccgaatgaagctcctcagctatcacctcagg 472 ||||||||||| | | ||||||||||||||||||||||| |||| Sbjct: 27002540 ggatgcatacctagacaaatgaagctcctcagctatcaccacagg 27002496
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 428 ggatgcatacccanccgaatgaagctcctcagctatcacctcagg 472 ||||||||||| | | ||||||||||||||||||||||| |||| Sbjct: 27329593 ggatgcatacctagacaaatgaagctcctcagctatcaccacagg 27329549
>ref|NM_136891.2| Drosophila melanogaster CG8877-RA (CG8877), mRNA Length = 7317 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 187 ataaaggagactggctatacttacatcatgcccaagaatatattgaagaagtt 239 ||||||||||| ||||| || |||||| |||||||||| ||| | |||||||| Sbjct: 6469 ataaaggagaccggctacacctacatcctgcccaagaacatactcaagaagtt 6521
>gb|AY051826.1| Drosophila melanogaster LD33339 full length cDNA Length = 4296 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 187 ataaaggagactggctatacttacatcatgcccaagaatatattgaagaagtt 239 ||||||||||| ||||| || |||||| |||||||||| ||| | |||||||| Sbjct: 3435 ataaaggagaccggctacacctacatcctgcccaagaacatactcaagaagtt 3487
>gb|AC007475.7|AC007475 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR04E21, complete sequence Length = 173613 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 187 ataaaggagactggctatacttacatcatgcccaagaatatattgaagaagtt 239 ||||||||||| ||||| || |||||| |||||||||| ||| | |||||||| Sbjct: 148543 ataaaggagaccggctacacctacatcctgcccaagaacatactcaagaagtt 148491
>ref|XM_213385.3| PREDICTED: Rattus norvegicus pre-mRNA processing factor 8 (predicted) (Prpf8_predicted), mRNA Length = 7021 Score = 50.1 bits (25), Expect = 0.007 Identities = 103/129 (79%) Strand = Plus / Plus Query: 121 gtcagggccatctctgctacaaacttatatctccgtgtcaaccacatttatgttaactca 180 |||||||||||||||||| | ||| | |||| || ||| |||||||||||| || Sbjct: 6236 gtcagggccatctctgctgccaacctgcatctacggaccaatcacatttatgtttcatct 6295 Query: 181 gatgatataaaggagactggctatacttacatcatgcccaagaatatattgaagaagttc 240 ||||| || ||||||||||| ||||| ||||| | ||||| ||| | ||||||||||| Sbjct: 6296 gatgacatcaaggagactggttatacgtacattcttcccaaaaatgtgctgaagaagttc 6355 Query: 241 atatgcata 249 || |||||| Sbjct: 6356 atctgcata 6364
>gb|AE003823.3| Drosophila melanogaster chromosome 2R, section 27 of 73 of the complete sequence Length = 292919 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 187 ataaaggagactggctatacttacatcatgcccaagaatatattgaagaagtt 239 ||||||||||| ||||| || |||||| |||||||||| ||| | |||||||| Sbjct: 159388 ataaaggagaccggctacacctacatcctgcccaagaacatactcaagaagtt 159336
>gb|BC099197.1| Rattus norvegicus pre-mRNA processing factor 8, mRNA (cDNA clone IMAGE:7383791), partial cds Length = 1420 Score = 50.1 bits (25), Expect = 0.007 Identities = 103/129 (79%) Strand = Plus / Plus Query: 121 gtcagggccatctctgctacaaacttatatctccgtgtcaaccacatttatgttaactca 180 |||||||||||||||||| | ||| | |||| || ||| |||||||||||| || Sbjct: 449 gtcagggccatctctgctgccaacctgcatctacggaccaatcacatttatgtttcatct 508 Query: 181 gatgatataaaggagactggctatacttacatcatgcccaagaatatattgaagaagttc 240 ||||| || ||||||||||| ||||| ||||| | ||||| ||| | ||||||||||| Sbjct: 509 gatgacatcaaggagactggttatacgtacattcttcccaaaaatgtgctgaagaagttc 568 Query: 241 atatgcata 249 || |||||| Sbjct: 569 atctgcata 577
>ref|XM_523763.1| PREDICTED: Pan troglodytes similar to pre-mRNA processing 8 protein (LOC468374), mRNA Length = 8634 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 3544 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 3603
>ref|NM_006445.3| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8), mRNA Length = 7311 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 6406 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 6465
>gb|BC064370.1| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae), mRNA (cDNA clone MGC:74762 IMAGE:5587081), complete cds Length = 7276 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 6371 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 6430
>gb|BC034545.1| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4473590), with apparent retained intron Length = 1424 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 446 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 505
>dbj|AK126169.1| Homo sapiens cDNA FLJ44181 fis, clone THYMU2038301, highly similar to Homo sapiens mRNA for PRP8 protein Length = 2159 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 1271 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 1330
>emb|CR624543.1| full-length cDNA clone CS0DK002YE23 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1796 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 941 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 1000
>emb|CR605208.1| full-length cDNA clone CS0DI086YI24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1419 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 530 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 589
>gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, complete sequence Length = 217253 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Minus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 103133 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 103074
>gb|AF092565.1|AF092565 Homo sapiens splicing factor Prp8 mRNA, complete cds Length = 7239 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 6330 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 6389
>dbj|AK222905.1| Homo sapiens mRNA for U5 snRNP-specific protein variant, clone: HRC03173 Length = 1423 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 482 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 541
>emb|BX649099.1|HSM809250 Homo sapiens mRNA; cDNA DKFZp686L08123 (from clone DKFZp686L08123) Length = 11647 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 10735 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 10794
>dbj|AK058034.1| Homo sapiens cDNA FLJ25305 fis, clone SYN00254, highly similar to Homo sapiens mRNA for PRP8 protein Length = 1897 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 1009 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 1068
>dbj|AB007510.1| Homo sapiens mRNA for PRP8 protein, complete cds Length = 7221 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 190 aaggagactggctatacttacatcatgcccaagaatatattgaagaagttcatatgcata 249 |||||||||||||| || |||||| | ||||||||| | | ||||||||||| |||||| Sbjct: 6333 aaggagactggctacacctacatccttcccaagaatgtgcttaagaagttcatctgcata 6392
>emb|CR522882.5| Zebrafish DNA sequence from clone CH211-209M4 in linkage group 15, complete sequence Length = 129430 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 199 ggctatacttacatcatgcccaagaatatattgaagaagttcatatgcatagcagatct 257 ||||| ||||||||| |||||||||| | ||||||||||||| ||||| ||||||| Sbjct: 68765 ggctacacttacatcctgcccaagaacgttctgaagaagttcatctgcatctcagatct 68823
>ref|XM_422801.1| PREDICTED: Gallus gallus similar to SQTR9367 (LOC424994), mRNA Length = 1847 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 356 ctcaccagatggtgactctgcc 377 |||||||||||||||||||||| Sbjct: 399 ctcaccagatggtgactctgcc 378
>ref|XM_518616.1| PREDICTED: Pan troglodytes similar to KIAA1009 protein (LOC462859), mRNA Length = 2733 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 attttggagaacaacaagcag 513 ||||||||||||||||||||| Sbjct: 2140 attttggagaacaacaagcag 2160
>emb|AL138742.24| Human DNA sequence from clone RP1-76K10 on chromosome 6 Contains gene KIAA1009 or FLJ13551 and a CpG island, complete sequence Length = 118648 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 493 attttggagaacaacaagcag 513 ||||||||||||||||||||| Sbjct: 45663 attttggagaacaacaagcag 45643
>ref|NM_208516.1| Eremothecium gossypii ABR214Cp (ABR214C), mRNA Length = 4047 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 475 ttgacatcacattccaagattttgg 499 |||||| |||||||||||||||||| Sbjct: 650 ttgacaacacattccaagattttgg 674
>gb|AC126939.5| Mus musculus BAC clone RP23-62M8 from 13, complete sequence Length = 236514 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 aggacttgacatcacattcca 490 ||||||||||||||||||||| Sbjct: 15591 aggacttgacatcacattcca 15611
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 475 ttgacatcacattccaagattttgg 499 |||||| |||||||||||||||||| Sbjct: 809419 ttgacaacacattccaagattttgg 809395
>emb|AL606829.13| Mouse DNA sequence from clone RP23-10M12 on chromosome 11 Contains a novel gene (MOR280-1) similar to the olfactory receptor family, a novel gene (D330012D11Rik), the Zfp62 gene for zinc finger protein 62, the Mgat1 gene for mannoside acetylglucosaminyltransferase 1, a novel gene (MOR256-24) similar to the olfactory receptor family, a novel gene (MOR256-25) similar to the olfactory receptor family, a novel gene (LOC216715) similar to the olfactory receptor MOR256 family, a novel gene (MOR256-27) similar to the olfactory receptor family, a novel gene (MOR256-2) similar to the olfactory receptor family and three CpG islands, complete sequence Length = 203286 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 tcacattccaagattttgga 500 |||||||||||||||||||| Sbjct: 50681 tcacattccaagattttgga 50662
>gb|AC012048.11| Homo sapiens chromosome 10 clone RP11-43N22, complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 agattttggagaacaacaagcagt 514 ||||||||||||||||| |||||| Sbjct: 148593 agattttggagaacaaccagcagt 148570
>gb|AC098675.2| Homo sapiens BAC clone RP11-370K14 from 4, complete sequence Length = 91915 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 ctcaccagatggtgactctgccag 379 ||||||||||||||| |||||||| Sbjct: 44562 ctcaccagatggtgaatctgccag 44585
>gb|AF163311.1|AF163311 Danio rerio Kal1.2 mRNA, complete cds Length = 3179 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcattatcacgacaaccag 77 |||||||||||||||||||| Sbjct: 1252 ctcattatcacgacaaccag 1271
>emb|AL953867.18| Zebrafish DNA sequence from clone CH211-258L4 in linkage group 22, complete sequence Length = 177575 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ctcattatcacgacaaccag 77 |||||||||||||||||||| Sbjct: 93178 ctcattatcacgacaaccag 93159
>ref|NM_131379.1| Danio rerio Kallmann syndrome 1b sequence (kal1b), mRNA Length = 3179 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcattatcacgacaaccag 77 |||||||||||||||||||| Sbjct: 1252 ctcattatcacgacaaccag 1271
>emb|AL929163.5| Mouse DNA sequence from clone RP23-450P9 on chromosome 2, complete sequence Length = 184256 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcagggccatctctgctaca 141 |||||||||||||||||||| Sbjct: 105330 tcagggccatctctgctaca 105311 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,940,415 Number of Sequences: 3902068 Number of extensions: 3940415 Number of successful extensions: 68193 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67994 Number of HSP's gapped (non-prelim): 193 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
