| Clone Name | bags21i23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009629.1| Triticum aestivum clone wre1n.pk168.h11:fis, full insert mRNA sequence Length = 1391 Score = 979 bits (494), Expect = 0.0 Identities = 551/570 (96%) Strand = Plus / Plus Query: 8 gtatacttctcttggcaggccaatcttgggttctgctgataacgtcaagtctatcaccaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 gtatacttctcttggcaggccaatcttgggttctgctgataacgtcaagtctatcaccaa 201 Query: 68 aaaggatctcgtagactacattcaaaatcattacacggcttctagaatggttattactgc 127 |||| ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 202 aaagaatctcatagactacattcaaaagcattacacggcttctagaatggtcattactgc 261 Query: 128 tgctggtgctgttaagcatgatgatattgtacaacaggcaaaagagctgttcaaaacgct 187 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 262 tgctggtgctgttaagcatgatgatattgtacagcaggcaaaagagctgttcaaatcgct 321 Query: 188 gccaactgaccctacaacaaccaacatgttggttgctaagcagccagccatttttactgg 247 ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| Sbjct: 322 gccaactgaccctacaacaactaacatgttggttgctgaacagccagccatttttactgg 381 Query: 248 ttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgttgccttcaa 307 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 382 ttctgaggtacgaatcattgatgatgacatgcccctggcccaatttgctgttgccttcaa 441 Query: 308 tggagcatcctggacagatcccgattctattgcattaatggttatgcaaaccatgcttgg 367 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 442 tggagcatcctggacagatcctgattctattgcattaatggttatgcaaactatgcttgg 501 Query: 368 ttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgtacagagagt 427 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 ttcgtggaacaagagtgctggaggagggaagcacatgggttcggagcttgtacagagagt 561 Query: 428 agcaatcaatgacatagctgagagtataatggcattcaacacaaactataaggacactgg 487 |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 562 agcaatcaatgaaatagctgagagtataatggcattcaatacaaactacaaggacactgg 621 Query: 488 cctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgatttggcttttgcaat 547 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 622 cctgtttggtgtctatgctgtcgctaaggctgattgcttggatgatttggcttttgcaat 681 Query: 548 tatgcaagagatgagcaaattatcatacag 577 |||||||||||||||||||||||||||||| Sbjct: 682 tatgcaagagatgagcaaattatcatacag 711
>gb|AY108579.1| Zea mays PCO102927 mRNA sequence Length = 2137 Score = 537 bits (271), Expect = e-149 Identities = 493/567 (86%) Strand = Plus / Plus Query: 9 tatacttctcttggcaggccaatcttgggttctgctgataacgtcaagtctatcaccaaa 68 ||||| || |||||||| ||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 888 tatacatcccttggcagaccaatcttgggttctgcagataacgtcaagtcaatcaccaaa 947 Query: 69 aaggatctcgtagactacattcaaaatcattacacggcttctagaatggttattactgct 128 |||| |||| |||||||| || |||||| || ||||||||||||||||| || ||| Sbjct: 948 gaggacctcgagaactacattgcaactcattatacagcttctagaatggttatcacagct 1007 Query: 129 gctggtgctgttaagcatgatgatattgtacaacaggcaaaagagctgttcaaaacgctg 188 || || |||||| ||||| || ||||| | |||||||| || |||||| | ||| Sbjct: 1008 gcaggcaatgttaaacatgaagacattgttgagcaggcaaagaagttgttcagcaagcta 1067 Query: 189 ccaactgaccctacaacaaccaacatgttggttgctaagcagccagccatttttactggt 248 ||||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||| Sbjct: 1068 tcaactgaccctacaacaacaaacatgttggtctctaagcagccagcctctttcactggt 1127 Query: 249 tctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgttgccttcaat 308 |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 1128 tctgaggttcgaatcattgatgatgacatgcccctcgctcaatttgctgttgctttcaat 1187 Query: 309 ggagcatcctggacagatcccgattctattgcattaatggttatgcaaaccatgcttggt 368 |||||||| ||| ||||| |||||| ||||| | |||||||||||||| ||||||||| Sbjct: 1188 ggagcatcatgggtggatcctgattctgttgcactgatggttatgcaaacaatgcttggt 1247 Query: 369 tcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgtacagagagta 428 || ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||| | | Sbjct: 1248 tcatggaacaagagtgctggtggaggaaagcacatgggttcagagcttgtgcagagggca 1307 Query: 429 gcaatcaatgacatagctgagagtataatggcattcaacacaaactataaggacactggc 488 |||||||||||||| ||||||||| |||||| |||||| || || || ||||||||||| Sbjct: 1308 gcaatcaatgacatcgctgagagtgtaatgggattcaatacgaattacaaggacactggt 1367 Query: 489 ctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgatttggcttttgcaatt 548 || |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct: 1368 ctttttggtgtctatgctgttgctaaggctgattgcttggatgatttggcttttgcaatt 1427 Query: 549 atgcaagagatgagcaaattatcatac 575 ||||| |||||||||||||| |||||| Sbjct: 1428 atgcatgagatgagcaaattgtcatac 1454
>dbj|AK120113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025E12, full insert sequence Length = 2166 Score = 531 bits (268), Expect = e-148 Identities = 490/564 (86%) Strand = Plus / Plus Query: 12 acttctcttggcaggccaatcttgggttctgctgataacgtcaagtctatcaccaaaaag 71 |||||||||||||| ||||||||||||||||| || || |||||||| || ||| || || Sbjct: 903 acttctcttggcagaccaatcttgggttctgcagaaaatgtcaagtcaattacccaagag 962 Query: 72 gatctcgtagactacattcaaaatcattacacggcttctagaatggttattactgctgct 131 || ||| | || ||| ||| ||||| |||||| ||||||||||||| ||||||||| Sbjct: 963 gacctccagaagtatattgaaacacattatacggctcctagaatggttatcactgctgct 1022 Query: 132 ggtgctgttaagcatgatgatattgtacaacaggcaaaagagctgttcaaaacgctgcca 191 ||||||||||||||||||||||||||| | ||||| | | ||||| || || ||| Sbjct: 1023 ggtgctgttaagcatgatgatattgtagagatggcaacaaaactgtttaatgacctacca 1082 Query: 192 actgaccctacaacaaccaacatgttggttgctaagcagccagccatttttactggttct 251 ||||||||||||||||| | |||||||||| ||| || |||||| |||||||||||| Sbjct: 1083 actgaccctacaacaacaagcatgttggtttctacccaaccagcctgctttactggttct 1142 Query: 252 gaggtacgaatcattgatgatgacatgccccttgctcaatttgctgttgccttcaatgga 311 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1143 gaggtccgcatcattgatgatgacatgccccttgctcaatttgctgttgcctttaatgga 1202 Query: 312 gcatcctggacagatcccgattctattgcattaatggttatgcaaaccatgcttggttcc 371 ||||| |||| |||||| ||||||||||| || ||||| |||||| |||||||||| || Sbjct: 1203 gcatcatggatagatcctgattctattgccttgatggtcatgcaatccatgcttggctca 1262 Query: 372 tggaacaagagtgctggaggagggaagcacatgggttcggagcttgtacagagagtagca 431 |||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| Sbjct: 1263 tggaacaagagtgctggaggagggaaacacatgggttcagagcttgtacaaagggtagcg 1322 Query: 432 atcaatgacatagctgagagtataatggcattcaacacaaactataaggacactggcctg 491 ||||||||||| |||||||||||||||||||| || ||||| || |||||||||||||| Sbjct: 1323 atcaatgacattgctgagagtataatggcatttaatacaaattacaaggacactggcctc 1382 Query: 492 tttggtgtgtatgctgtcgctaagcctgattgcttggatgatttggcttttgcaattatg 551 |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 1383 tttggtgtctacgctgttgctaagcctgactgcttggatgatttggcttttgcaatcatg 1442 Query: 552 caagagatgagcaaattatcatac 575 |||||||| |||||| | |||||| Sbjct: 1443 caagagattagcaaactgtcatac 1466
>dbj|AK060718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E10, full insert sequence Length = 1410 Score = 523 bits (264), Expect = e-145 Identities = 489/564 (86%) Strand = Plus / Plus Query: 12 acttctcttggcaggccaatcttgggttctgctgataacgtcaagtctatcaccaaaaag 71 |||||||||||||| ||||||||||||||||| || || |||||||| || ||| || || Sbjct: 146 acttctcttggcagaccaatcttgggttctgcagaaaatgtcaagtcaattacccaagag 205 Query: 72 gatctcgtagactacattcaaaatcattacacggcttctagaatggttattactgctgct 131 || ||| | || ||| ||| ||||| |||||| ||||||||||||| ||||||||| Sbjct: 206 gacctccagaagtatattgaaacacattatacggctcctagaatggttatcactgctgct 265 Query: 132 ggtgctgttaagcatgatgatattgtacaacaggcaaaagagctgttcaaaacgctgcca 191 ||||||||||||||||||||||||||| | ||||| | | ||||| || || ||| Sbjct: 266 ggtgctgttaagcatgatgatattgtagagatggcaacaaaactgtttaatgacctacca 325 Query: 192 actgaccctacaacaaccaacatgttggttgctaagcagccagccatttttactggttct 251 ||||||||||||||||| | |||||||||| ||| || |||||| |||||||||||| Sbjct: 326 actgaccctacaacaacaagcatgttggtttctacccaaccagcctgctttactggttct 385 Query: 252 gaggtacgaatcattgatgatgacatgccccttgctcaatttgctgttgccttcaatgga 311 ||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct: 386 gaggtccgcatcattgatggtgacatgccccttgctcaatttgctgttgcctttaatgga 445 Query: 312 gcatcctggacagatcccgattctattgcattaatggttatgcaaaccatgcttggttcc 371 ||||| |||| |||||| ||||||||||| || ||||| |||||| |||||||||| || Sbjct: 446 gcatcatggatagatcctgattctattgccttgatggtcatgcaatccatgcttggctca 505 Query: 372 tggaacaagagtgctggaggagggaagcacatgggttcggagcttgtacagagagtagca 431 |||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| Sbjct: 506 tggaacaagagtgctggaggagggaaacacatgggttcagagcttgtacaaagggtagcg 565 Query: 432 atcaatgacatagctgagagtataatggcattcaacacaaactataaggacactggcctg 491 ||||||||||| |||||||||||||||||||| || ||||| || |||||||||||||| Sbjct: 566 atcaatgacattgctgagagtataatggcatttaatacaaattacaaggacactggcctc 625 Query: 492 tttggtgtgtatgctgtcgctaagcctgattgcttggatgatttggcttttgcaattatg 551 |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 626 tttggtgtctacgctgttgctaagcctgactgcttggatgatttggcttttgcaatcatg 685 Query: 552 caagagatgagcaaattatcatac 575 |||||||| |||||| | |||||| Sbjct: 686 caagagattagcaaactgtcatac 709
>gb|AY111909.1| Zea mays CL491_-2 mRNA sequence Length = 584 Score = 442 bits (223), Expect = e-121 Identities = 344/386 (89%) Strand = Plus / Plus Query: 190 caactgaccctacaacaaccaacatgttggttgctaagcagccagccatttttactggtt 249 ||||||||||||||||||| ||||||||||| |||||||| |||||| ||| || |||| Sbjct: 39 caactgaccctacaacaacaaacatgttggtcgctaagcaaccagcctctttcacgggtt 98 Query: 250 ctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgttgccttcaatg 309 ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 99 ctgaggttcgaatcattgacgatgacatgccccttgctcaatttgctgttgctttcaatg 158 Query: 310 gagcatcctggacagatcccgattctattgcattaatggttatgcaaaccatgcttggtt 369 ||||||| ||| |||||| |||||| ||||| | |||||||||||| | |||||||||| Sbjct: 159 gagcatcatgggtagatcctgattctgttgcactgatggttatgcaatcaatgcttggtt 218 Query: 370 cctggaacaagagtgctggaggagggaagcacatgggttcggagcttgtacagagagtag 429 | ||||||||||||||||| ||||| |||||||||||||||||||||||||||| || || Sbjct: 219 catggaacaagagtgctggtggaggaaagcacatgggttcggagcttgtacagaaagcag 278 Query: 430 caatcaatgacatagctgagagtataatggcattcaacacaaactataaggacactggcc 489 ||||||||||||| ||||||||| ||||| ||||||||| || || ||||||||||| | Sbjct: 279 caatcaatgacattgctgagagtgtaatgtcattcaacatgaattacaaggacactggtc 338 Query: 490 tgtttggtgtgtatgctgtcgctaagcctgattgcttggatgatttggcttttgcaatta 549 ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 339 nnnnnggtgtctatgctgttgctaaggctgattgcttggatgatttggcttttgcaatta 398 Query: 550 tgcaagagatgagcaaattatcatac 575 |||| |||||||||||||| |||||| Sbjct: 399 tgcatgagatgagcaaattgtcatac 424
>gb|AF297643.1|AF297643 Cucumis melo mitochondrial processing peptidase beta subunit mRNA, complete cds; nuclear gene for mitochondrial product Length = 1906 Score = 208 bits (105), Expect = 1e-50 Identities = 276/333 (82%) Strand = Plus / Plus Query: 215 gttggttgctaagcagccagccatttttactggttctgaggtacgaatcattgatgatga 274 ||||||||| ||| ||||||| ||||||||||| || ||||| || || ||||||| || Sbjct: 966 gttggttgcaaaggagccagcaatttttactggctccgaggttcggatagttgatgacga 1025 Query: 275 catgccccttgctcaatttgctgttgccttcaatggagcatcctggacagatcccgattc 334 | ||| | |||||||||||| |||| || ||||||||||||||||||||||| || || Sbjct: 1026 tgttcccttggctcaatttgctattgcttttaatggagcatcctggacagatccagactc 1085 Query: 335 tattgcattaatggttatgcaaaccatgcttggttcctggaacaagagtgctggaggagg 394 ||||| | ||||| |||||| | ||| | ||||||||||| || ||||||||||| || Sbjct: 1086 cattgccctgatggtcatgcaagctatgttgggttcctggaataaaagtgctggaggtgg 1145 Query: 395 gaagcacatgggttcggagcttgtacagagagtagcaatcaatgacatagctgagagtat 454 ||||| |||||||| ||||| | || ||||| || |||||||| |||| || ||||| Sbjct: 1146 aaagcatatgggttctgagctggcccaaagagttgccatcaatgaggtagcagaaagtat 1205 Query: 455 aatggcattcaacacaaactataaggacactggcctgtttggtgtgtatgctgtcgctaa 514 ||||| |||||||| || || ||||||||||| || |||||||| |||||||| || || Sbjct: 1206 gatggctttcaacaccaattacaaggacactggtctttttggtgtctatgctgttgcaaa 1265 Query: 515 gcctgattgcttggatgatttggcttttgcaat 547 |||||| ||||||||||||||||||| |||||| Sbjct: 1266 gcctgactgcttggatgatttggcttatgcaat 1298 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 111 agaatggttattactgctgctggtgctgttaagcatgatgatattgt 157 |||||||||||| ||||| | || |||||||||||||| ||| |||| Sbjct: 862 agaatggttattgctgcttccggagctgttaagcatgaggattttgt 908
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 202 bits (102), Expect = 9e-49 Identities = 135/146 (92%) Strand = Plus / Plus Query: 261 atcattgatgatgacatgccccttgctcaatttgctgttgccttcaatggagcatcctgg 320 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 5840289 atcattgatgatgacatgccccttgctcaatttgctgttgcctttaatggagcatcatgg 5840348 Query: 321 acagatcccgattctattgcattaatggttatgcaaaccatgcttggttcctggaacaag 380 | |||||| ||||||||||| || ||||| |||||| |||||||||| || ||||||||| Sbjct: 5840349 atagatcctgattctattgccttgatggtcatgcaatccatgcttggctcatggaacaag 5840408 Query: 381 agtgctggaggagggaagcacatggg 406 ||||||||||||||||| |||||||| Sbjct: 5840409 agtgctggaggagggaaacacatggg 5840434 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 406 gttcggagcttgtacagagagtagcaatcaatgacatagctgagagtataatggcattca 465 |||| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| | Sbjct: 5840540 gttcagagcttgtacaaagggtagcgatcaatgacattgctgagagtataatggcattta 5840599 Query: 466 acacaaactataaggacactggcctgtttggtgtgtatgctgtcgctaag 515 | ||||| || |||||||||||||| |||||||| || ||||| |||||| Sbjct: 5840600 atacaaattacaaggacactggcctctttggtgtctacgctgttgctaag 5840649 Score = 97.6 bits (49), Expect = 4e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 116 ggttattactgctgctggtgctgttaagcatgatgatattgtacaacaggcaaaagagct 175 |||||| |||||||||||||||||||||||||||||||||||| | ||||| | | || Sbjct: 5840075 ggttatcactgctgctggtgctgttaagcatgatgatattgtagagatggcaacaaaact 5840134 Query: 176 gttcaaaacgctgccaactgaccctacaacaaccaacatgttggttgctaagcagccagc 235 ||| || || |||||||||||||||||||| | |||||||||| ||| || ||||| Sbjct: 5840135 gtttaatgacctaccaactgaccctacaacaacaagcatgttggtttctacccaaccagc 5840194 Query: 236 catttttactggttctgaggt 256 | ||||||||||||||||| Sbjct: 5840195 ctgctttactggttctgaggt 5840215 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 514 agcctgattgcttggatgatttggcttttgcaattatgcaagagatgagcaaattatcat 573 ||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | |||| Sbjct: 5841336 agcctgactgcttggatgatttggcttttgcaatcatgcaagagattagcaaactgtcat 5841395 Query: 574 ac 575 || Sbjct: 5841396 ac 5841397 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 12 acttctcttggcaggccaatcttgggttctgctgataacgtcaagtc 58 |||||||||||||| ||||||||||||||||| || || |||||||| Sbjct: 5839847 acttctcttggcagaccaatcttgggttctgcagaaaatgtcaagtc 5839893
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 202 bits (102), Expect = 9e-49 Identities = 135/146 (92%) Strand = Plus / Plus Query: 261 atcattgatgatgacatgccccttgctcaatttgctgttgccttcaatggagcatcctgg 320 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 69119 atcattgatgatgacatgccccttgctcaatttgctgttgcctttaatggagcatcatgg 69178 Query: 321 acagatcccgattctattgcattaatggttatgcaaaccatgcttggttcctggaacaag 380 | |||||| ||||||||||| || ||||| |||||| |||||||||| || ||||||||| Sbjct: 69179 atagatcctgattctattgccttgatggtcatgcaatccatgcttggctcatggaacaag 69238 Query: 381 agtgctggaggagggaagcacatggg 406 ||||||||||||||||| |||||||| Sbjct: 69239 agtgctggaggagggaaacacatggg 69264 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 406 gttcggagcttgtacagagagtagcaatcaatgacatagctgagagtataatggcattca 465 |||| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| | Sbjct: 69370 gttcagagcttgtacaaagggtagcgatcaatgacattgctgagagtataatggcattta 69429 Query: 466 acacaaactataaggacactggcctgtttggtgtgtatgctgtcgctaag 515 | ||||| || |||||||||||||| |||||||| || ||||| |||||| Sbjct: 69430 atacaaattacaaggacactggcctctttggtgtctacgctgttgctaag 69479 Score = 97.6 bits (49), Expect = 4e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 116 ggttattactgctgctggtgctgttaagcatgatgatattgtacaacaggcaaaagagct 175 |||||| |||||||||||||||||||||||||||||||||||| | ||||| | | || Sbjct: 68905 ggttatcactgctgctggtgctgttaagcatgatgatattgtagagatggcaacaaaact 68964 Query: 176 gttcaaaacgctgccaactgaccctacaacaaccaacatgttggttgctaagcagccagc 235 ||| || || |||||||||||||||||||| | |||||||||| ||| || ||||| Sbjct: 68965 gtttaatgacctaccaactgaccctacaacaacaagcatgttggtttctacccaaccagc 69024 Query: 236 catttttactggttctgaggt 256 | ||||||||||||||||| Sbjct: 69025 ctgctttactggttctgaggt 69045 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 514 agcctgattgcttggatgatttggcttttgcaattatgcaagagatgagcaaattatcat 573 ||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | |||| Sbjct: 70166 agcctgactgcttggatgatttggcttttgcaatcatgcaagagattagcaaactgtcat 70225 Query: 574 ac 575 || Sbjct: 70226 ac 70227 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 12 acttctcttggcaggccaatcttgggttctgctgataacgtcaagtc 58 |||||||||||||| ||||||||||||||||| || || |||||||| Sbjct: 68677 acttctcttggcagaccaatcttgggttctgcagaaaatgtcaagtc 68723
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 202 bits (102), Expect = 9e-49 Identities = 135/146 (92%) Strand = Plus / Plus Query: 261 atcattgatgatgacatgccccttgctcaatttgctgttgccttcaatggagcatcctgg 320 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 5839502 atcattgatgatgacatgccccttgctcaatttgctgttgcctttaatggagcatcatgg 5839561 Query: 321 acagatcccgattctattgcattaatggttatgcaaaccatgcttggttcctggaacaag 380 | |||||| ||||||||||| || ||||| |||||| |||||||||| || ||||||||| Sbjct: 5839562 atagatcctgattctattgccttgatggtcatgcaatccatgcttggctcatggaacaag 5839621 Query: 381 agtgctggaggagggaagcacatggg 406 ||||||||||||||||| |||||||| Sbjct: 5839622 agtgctggaggagggaaacacatggg 5839647 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 406 gttcggagcttgtacagagagtagcaatcaatgacatagctgagagtataatggcattca 465 |||| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| | Sbjct: 5839753 gttcagagcttgtacaaagggtagcgatcaatgacattgctgagagtataatggcattta 5839812 Query: 466 acacaaactataaggacactggcctgtttggtgtgtatgctgtcgctaag 515 | ||||| || |||||||||||||| |||||||| || ||||| |||||| Sbjct: 5839813 atacaaattacaaggacactggcctctttggtgtctacgctgttgctaag 5839862 Score = 97.6 bits (49), Expect = 4e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 116 ggttattactgctgctggtgctgttaagcatgatgatattgtacaacaggcaaaagagct 175 |||||| |||||||||||||||||||||||||||||||||||| | ||||| | | || Sbjct: 5839288 ggttatcactgctgctggtgctgttaagcatgatgatattgtagagatggcaacaaaact 5839347 Query: 176 gttcaaaacgctgccaactgaccctacaacaaccaacatgttggttgctaagcagccagc 235 ||| || || |||||||||||||||||||| | |||||||||| ||| || ||||| Sbjct: 5839348 gtttaatgacctaccaactgaccctacaacaacaagcatgttggtttctacccaaccagc 5839407 Query: 236 catttttactggttctgaggt 256 | ||||||||||||||||| Sbjct: 5839408 ctgctttactggttctgaggt 5839428 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 514 agcctgattgcttggatgatttggcttttgcaattatgcaagagatgagcaaattatcat 573 ||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | |||| Sbjct: 5840549 agcctgactgcttggatgatttggcttttgcaatcatgcaagagattagcaaactgtcat 5840608 Query: 574 ac 575 || Sbjct: 5840609 ac 5840610 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 12 acttctcttggcaggccaatcttgggttctgctgataacgtcaagtc 58 |||||||||||||| ||||||||||||||||| || || |||||||| Sbjct: 5839060 acttctcttggcagaccaatcttgggttctgcagaaaatgtcaagtc 5839106
>emb|X80237.1|STBIMPP S.tuberosum mRNA for beta-I MPP Length = 1961 Score = 165 bits (83), Expect = 2e-37 Identities = 245/299 (81%) Strand = Plus / Plus Query: 229 agccagccatttttactggttctgaggtacgaatcattgatgatgacatgccccttgctc 288 ||||||| || ||||| ||||| ||| |||| |||||||||||||| |||| || |||| Sbjct: 977 agccagcaatatttacaggttcagagatacgtatcattgatgatgatctgcctctcgctc 1036 Query: 289 aatttgctgttgccttcaatggagcatcctggacagatcccgattctattgcattaatgg 348 ||||||||||||| || | |||||| || |||||||| || || || || || || |||| Sbjct: 1037 aatttgctgttgcatttagtggagcgtcatggacagaccctgactccatagctttgatgg 1096 Query: 349 ttatgcaaaccatgcttggttcctggaacaagagtgctggaggagggaagcacatgggtt 408 | |||||| ||||| || || |||||||| ||| | |||||||| ||||||||||||| Sbjct: 1097 tcatgcaacaaatgctaggatcatggaacaaaagttcaggaggaggaaagcacatgggtt 1156 Query: 409 cggagcttgtacagagagtagcaatcaatgacatagctgagagtataatggcattcaaca 468 | |||||||| ||||| || || || ||||| ||||||| ||| | ||||| || |||| Sbjct: 1157 cagagcttgtccagagggtggccattaatgagctagctgaaagtgtgatggcttttaaca 1216 Query: 469 caaactataaggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttg 527 | |||||||| || || || ||||||||||| ||||||| |||||||||||||||||| Sbjct: 1217 ccaactataaagatacagggctgtttggtgtctatgctgaagctaagcctgattgcttg 1275
>gb|AF363285.1|AF363285 Avicennia marina mitochondrial processing peptidase mRNA, complete cds; nuclear gene for mitochondrial product Length = 1870 Score = 163 bits (82), Expect = 8e-37 Identities = 256/314 (81%) Strand = Plus / Plus Query: 238 tttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctg 297 ||||||||||||| ||||| | || | ||||||||||| || ||||| |||||||||| Sbjct: 1006 tttttactggttcagaggtgaggatgctcgatgatgacattcctcttgcccaatttgctg 1065 Query: 298 ttgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaa 357 ||||||| | || || || ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 1066 ttgcctttgaaggggcttcatggacagatccagattccattgctttaatggtcatgcagt 1125 Query: 358 ccatgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttg 417 | ||| | ||||| ||||| || | ||||| || || ||||| |||||||| ||||||| Sbjct: 1126 cgatgttaggttcttggaataaaaatgctgttggtggaaagcatatgggttctgagcttg 1185 Query: 418 tacagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactata 477 ||||||||| | |||||||| ||||| ||||| || ||||| ||||| || ||||||| Sbjct: 1186 cacagagagttgggatcaatgaaatagccgagagcatgatggctttcaataccaactata 1245 Query: 478 aggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgatttgg 537 | |||||||| | |||||||| |||||| | ||||||||||| |||||||| ||||||| Sbjct: 1246 aagacactggtttatttggtgtttatgctattgctaagcctgactgcttggacgatttgg 1305 Query: 538 cttttgcaattatg 551 | | ||| |||||| Sbjct: 1306 cctatgcgattatg 1319 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 130 ctggtgctgttaagcatgatgatattgt 157 ||||||||||||||||||| ||| |||| Sbjct: 895 ctggtgctgttaagcatgaagattttgt 922
>ref|NM_111075.2| Arabidopsis thaliana MPPBETA; metalloendopeptidase AT3G02090 (MPPBETA) transcript variant AT3G02090.1 mRNA, complete cds Length = 2056 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 1035 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1094 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1095 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1154 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1155 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1214 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1215 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1274 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1275 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1331 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 878 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 937 Query: 142 agcatga 148 ||||||| Sbjct: 938 agcatga 944
>ref|NM_180169.1| Arabidopsis thaliana MPPBETA; metalloendopeptidase AT3G02090 (MPPBETA) transcript variant AT3G02090.2 mRNA, complete cds Length = 2060 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 1035 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1094 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1095 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1154 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1155 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1214 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1215 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1274 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1275 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1331 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 878 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 937 Query: 142 agcatga 148 ||||||| Sbjct: 938 agcatga 944
>gb|BT000830.1| Arabidopsis thaliana putative mitochondrial processing peptidase (At3g02090/F1C9_12) mRNA, complete cds Length = 1596 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 960 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1019 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1020 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1079 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1080 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1139 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1140 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1199 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1200 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1256 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 803 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 862 Query: 142 agcatga 148 ||||||| Sbjct: 863 agcatga 869
>gb|BT000662.1| Arabidopsis thaliana clone RAFL07-09-O22 (R10705) putative mitochondrial processing peptidase (At3g02090) mRNA, complete cds Length = 2036 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 1023 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1082 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1083 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1142 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1143 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1202 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1203 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1262 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1263 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1319 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 866 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 925 Query: 142 agcatga 148 ||||||| Sbjct: 926 agcatga 932
>gb|AY057579.1| Arabidopsis thaliana At3g02090 mRNA sequence Length = 2026 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 1031 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1090 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1091 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1150 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1151 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1210 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1211 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1270 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1271 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1327 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 873 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 932 Query: 142 agcatga 148 ||||||| Sbjct: 933 agcatga 939
>gb|AY126990.1| Arabidopsis thaliana AT3g02090/F1C9_12 mRNA, complete cds Length = 1911 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 1030 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1089 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1090 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1149 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1150 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1209 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1210 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1269 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1270 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1326 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 873 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 932 Query: 142 agcatga 148 ||||||| Sbjct: 933 agcatga 939
>emb|BX823363.1|CNS0A4RL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS27ZD01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1928 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 1026 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1085 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1086 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1145 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1146 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1205 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1206 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1265 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1266 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1322 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 869 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 928 Query: 142 agcatga 148 ||||||| Sbjct: 929 agcatga 935
>gb|BT001915.1| Arabidopsis thaliana clone C105149 putative mitochondrial processing peptidase (At3g02090) mRNA, complete cds Length = 1627 Score = 153 bits (77), Expect = 8e-34 Identities = 242/297 (81%) Strand = Plus / Plus Query: 239 ttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgt 298 |||||||||||||||||| ||||| |||||||| ||| | |||||||| ||||||||||| Sbjct: 960 ttttactggttctgaggtccgaatgattgatgacgacctaccccttgcacaatttgctgt 1019 Query: 299 tgccttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaac 358 |||||| | |||||||| ||||| ||||| ||||| |||| | |||||||||||||| Sbjct: 1020 tgcctttgagggagcatcttggactgatccagattccgttgctcttatggttatgcaaac 1079 Query: 359 catgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgt 418 ||| | ||||| |||||||| | || ||| || || || ||| ||||||| || || Sbjct: 1080 tatgttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgac 1139 Query: 419 acagagagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataa 478 ||||| || || || ||||| ||||| || || ||||||||||||||||| ||||| || Sbjct: 1140 ccagagggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaa 1199 Query: 479 ggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgattt 535 ||| ||||| ||||| || || ||||| || || ||| | ||||||||||||||||| Sbjct: 1200 ggatactggactgttcggcgtttatgcagttgccaaggccgattgcttggatgattt 1256 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 82 actacattcaaaatcattacacggcttctagaatggttattactgctgctggtgctgtta 141 |||||||| | | ||| ||||| ||||| || ||||| ||| ||||||| || ||||||| Sbjct: 803 actacattaagactcactacactgcttccaggatggtgattgctgctgcaggagctgtta 862 Query: 142 agcatga 148 ||||||| Sbjct: 863 agcatga 869
>gb|AY656733.1| Vitis vinifera clone 5-3 powdery mildew-resistant-like mRNA, partial sequence Length = 394 Score = 113 bits (57), Expect = 7e-22 Identities = 165/201 (82%) Strand = Plus / Minus Query: 215 gttggttgctaagcagccagccatttttactggttctgaggtacgaatcattgatgatga 274 ||||||||| || ||||||| | |||||||||||||||||| | || ||||||||||| Sbjct: 213 gttggttgcgaaagagccagctagttttactggttctgaggtcaggattattgatgatga 154 Query: 275 catgccccttgctcaatttgctgttgccttcaatggagcatcctggacagatcccgattc 334 | || || || |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct: 153 tgtcccactcgcacaatttgctgttgcattcaacggagcctcctggacagatcccgattc 94 Query: 335 tattgcattaatggttatgcaaaccatgcttggttcctggaacaagagtgctggaggagg 394 ||| | || ||||| ||||| | || || ||||| ||||| |||| | |||| ||||| Sbjct: 93 cattcctttgatggtcatgcagagtatactgggttcttggaataagaattctggtggagg 34 Query: 395 gaagcacatgggttcggagct 415 ||||||||||| || ||||| Sbjct: 33 aaagcacatggggtcagagct 13 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 111 agaatggttattactgctgctggtgctgttaagca 145 |||||||||||| ||||||||||||||||| |||| Sbjct: 317 agaatggttatttctgctgctggtgctgtttagca 283
>emb|BX825296.1|CNS0A4ZN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL27ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1939 Score = 109 bits (55), Expect = 1e-20 Identities = 233/291 (80%), Gaps = 1/291 (0%) Strand = Plus / Plus Query: 243 actggttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgttgcc 302 |||||||||||||| ||||| |||||||| ||| | ||||| || ||||||||||||||| Sbjct: 1015 actggttctgaggtccgaatgattgatgacgacctacccctagcacaatttgctgttgcc 1074 Query: 303 ttcaatggagcatcctggacagatcccgattctattgcattaatggttatgcaaaccatg 362 || | |||||||| ||||| ||||| ||||| || || ||||||||||| || ||| Sbjct: 1075 tttgagggagcatcttggactgatccagattc-cttttttttatggttatgcatactatg 1133 Query: 363 cttggttcctggaacaagagtgctggaggagggaagcacatgggttcggagcttgtacag 422 | ||||| |||||||| | || ||| || || || ||| ||||||| || || ||| Sbjct: 1134 ttgggttcgtggaacaaaaatgttggtggtggaaaacacgtgggttctgacctgacccag 1193 Query: 423 agagtagcaatcaatgacatagctgagagtataatggcattcaacacaaactataaggac 482 || || || || ||||| ||||| || || ||||||||||||||||| ||||| ||||| Sbjct: 1194 agggttgccattaatgaaatagcagaaagcataatggcattcaacactaactacaaggat 1253 Query: 483 actggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggatgat 533 ||||| ||||| || || ||||| || || ||| | ||||||||||||||| Sbjct: 1254 actggactgttcggcgtttatgcagttgccaaggccgattgcttggatgat 1304
>gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence Length = 103960 Score = 87.7 bits (44), Expect = 4e-14 Identities = 110/132 (83%) Strand = Plus / Minus Query: 248 ttctgaggtacgaatcattgatgatgacatgccccttgctcaatttgctgttgccttcaa 307 |||| |||| ||||| |||||||| ||| | |||||||| ||||||||||||||||| | Sbjct: 42084 ttctcaggtccgaatgattgatgacgacctaccccttgcacaatttgctgttgcctttga 42025 Query: 308 tggagcatcctggacagatcccgattctattgcattaatggttatgcaaaccatgcttgg 367 |||||||| ||||| ||||| ||||| |||| | |||||||||||||| ||| | || Sbjct: 42024 gggagcatcttggactgatccagattccgttgctcttatggttatgcaaactatgttggg 41965 Query: 368 ttcctggaacaa 379 ||| |||||||| Sbjct: 41964 ttcgtggaacaa 41953 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 435 aatgacatagctgagagtataatggcattcaacacaaactataaggacactggcctgtt 493 ||||| ||||| || || ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 41805 aatgaaatagcagaaagcataatggcattcaacactaactacaaggatactggactgtt 41747
>gb|DQ284488.1| Solanum tuberosum clone 028E08 mitochondrial processing peptidase-like mRNA, complete cds; nuclear gene for mitochondrial product Length = 1761 Score = 75.8 bits (38), Expect = 1e-10 Identities = 239/306 (78%) Strand = Plus / Plus Query: 231 ccagccatttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaa 290 ||||| |||||||| ||||| ||||| | | |||||||||||||| || | || ||| Sbjct: 1007 ccagcaatttttacaggttcagaggttagggtaattgatgatgacattccgttggcacaa 1066 Query: 291 tttgctgttgccttcaatggagcatcctggacagatcccgattctattgcattaatggtt 350 ||||||||||| || | || ||| | ||||| ||||| ||| | ||| | | ||||| Sbjct: 1067 tttgctgttgcttttcaaggggcaccatggactgatccagatgccattccgctgatggta 1126 Query: 351 atgcaaaccatgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcg 410 |||||| ||||||| || | ||||| || | ||| ||||||||||| |||||||| || Sbjct: 1127 atgcaatccatgctgggaacttggaataaaaatgccggaggagggaaacacatgggctcc 1186 Query: 411 gagcttgtacagagagtagcaatcaatgacatagctgagagtataatggcattcaacaca 470 || || | ||| || || || || ||||| |||||||||| || ||| | || ||||| Sbjct: 1187 gatctggcacaaagtgttgccattaatgaactagctgagagcatgatgtcttttaacacc 1246 Query: 471 aactataaggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggat 530 || |||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||| | Sbjct: 1247 aattataaggatactggtctgttcggcgtgtatgctgttgcaaagcctgattgtttgagt 1306 Query: 531 gatttg 536 |||||| Sbjct: 1307 gatttg 1312
>gb|BT013728.1| Lycopersicon esculentum clone 132587R, mRNA sequence Length = 1778 Score = 67.9 bits (34), Expect = 3e-08 Identities = 238/306 (77%) Strand = Plus / Plus Query: 231 ccagccatttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaa 290 ||||| |||||||| ||||| ||||| | | |||||||||||||| || | || ||| Sbjct: 1022 ccagcaatttttacaggttcagaggttagggtaattgatgatgacattccattggcacaa 1081 Query: 291 tttgctgttgccttcaatggagcatcctggacagatcccgattctattgcattaatggtt 350 ||||||||||| || | || ||| | ||||| ||||| ||| | ||| || | ||||| Sbjct: 1082 tttgctgttgcttttcaaggggcaccgtggactgatccagatgccattccactgatggta 1141 Query: 351 atgcaaaccatgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcg 410 |||||| ||||||| || | ||||| || | ||| ||||||||||| |||||||| || Sbjct: 1142 atgcaatccatgctgggcacttggaataaaaatgccggaggagggaaacacatgggctcc 1201 Query: 411 gagcttgtacagagagtagcaatcaatgacatagctgagagtataatggcattcaacaca 470 || || | ||| || || | || ||||| | |||||||| || ||| | || ||||| Sbjct: 1202 gatctggcacaaagtgttggcattaatgaacttgctgagagcatgatgtcttttaacacc 1261 Query: 471 aactataaggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggat 530 ||||||||||| ||||| |||| || ||||||||||| || ||||||||||| ||| | Sbjct: 1262 aactataaggatactggtttgttcggcgtgtatgctgttgcaaagcctgattgtttgagt 1321 Query: 531 gatttg 536 |||||| Sbjct: 1322 gatttg 1327
>emb|X80235.1|STBIIMPP S.tuberosum mRNA for beta-II MPP Length = 1848 Score = 67.9 bits (34), Expect = 3e-08 Identities = 238/306 (77%) Strand = Plus / Plus Query: 231 ccagccatttttactggttctgaggtacgaatcattgatgatgacatgccccttgctcaa 290 ||||| |||||||| ||||| ||||| | | |||||||||||||| || | || ||| Sbjct: 1006 ccagcaatttttacaggttcagaggttagggtaattgatgatgacattccgttggcacaa 1065 Query: 291 tttgctgttgccttcaatggagcatcctggacagatcccgattctattgcattaatggtt 350 ||||||||||| || | || ||| | ||||| ||||| ||| | ||| | | ||||| Sbjct: 1066 tttgctgttgcttttcaaggggcaccatggactgatccagatgccattccgctgatggta 1125 Query: 351 atgcaaaccatgcttggttcctggaacaagagtgctggaggagggaagcacatgggttcg 410 |||||| ||||||| || | ||||| || | ||| ||||||||||| |||||||| || Sbjct: 1126 atgcaatccatgctgggaacttggaataaaaatgccggaggagggaaacacatgggctcc 1185 Query: 411 gagcttgtacagagagtagcaatcaatgacatagctgagagtataatggcattcaacaca 470 || || | ||| || || || || ||||| |||||||||| || ||| | || ||||| Sbjct: 1186 gatctggcacaaagtgttgccattaatgaactagctgagagcatgatgtcttttaacacc 1245 Query: 471 aactataaggacactggcctgtttggtgtgtatgctgtcgctaagcctgattgcttggat 530 || |||||||| ||||| ||||| || ||||||||||| || ||| ||||||| ||| | Sbjct: 1246 aattataaggatactggtctgttcggcgtgtatgctgttgcaaagtctgattgtttgagt 1305 Query: 531 gatttg 536 |||||| Sbjct: 1306 gatttg 1311
>gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, complete sequence Length = 203003 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 gttattactgctgctggtgctg 138 |||||||||||||||||||||| Sbjct: 91293 gttattactgctgctggtgctg 91314
>emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chromosome 11p12-13, complete sequence Length = 106073 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 cctggaacaagagtgctggag 390 ||||||||||||||||||||| Sbjct: 76497 cctggaacaagagtgctggag 76477
>gb|AC026269.26| Homo sapiens chromosome 11, clone RP11-745E9, complete sequence Length = 173145 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 cctggaacaagagtgctggag 390 ||||||||||||||||||||| Sbjct: 12819 cctggaacaagagtgctggag 12799
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 aatcattgatgatgacatgcc 280 ||||||||||||||||||||| Sbjct: 1531145 aatcattgatgatgacatgcc 1531165
>dbj|AB010699.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9 Length = 61001 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 tgaccctacaacaaccaacat 214 ||||||||||||||||||||| Sbjct: 40444 tgaccctacaacaaccaacat 40424
>ref|XM_511581.1| PREDICTED: Pan troglodytes hypothetical protein XP_511581 (LOC454765), mRNA Length = 1261 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ggttattactgctgctggtg 135 |||||||||||||||||||| Sbjct: 695 ggttattactgctgctggtg 714
>gb|AC099884.12| Mus musculus chromosome 15, clone RP23-11F24, complete sequence Length = 265797 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tagaatggttattactgctg 129 |||||||||||||||||||| Sbjct: 116336 tagaatggttattactgctg 116317
>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete sequence Length = 210568 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 atgagcaaattatcatacag 577 |||||||||||||||||||| Sbjct: 103805 atgagcaaattatcatacag 103824
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ttactgctgctggtgctgtt 140 |||||||||||||||||||| Sbjct: 1693966 ttactgctgctggtgctgtt 1693985
>gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, complete sequence Length = 228206 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aagtctatcaccaaaaagga 73 |||||||||||||||||||| Sbjct: 91145 aagtctatcaccaaaaagga 91164
>gb|AC110247.9| Mus musculus chromosome 1, clone RP23-254H20, complete sequence Length = 209326 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acacggcttctagaatggtt 119 |||||||||||||||||||| Sbjct: 138244 acacggcttctagaatggtt 138263
>gb|AC119846.14| Mus musculus chromosome 1, clone RP23-45A13, complete sequence Length = 242338 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acacggcttctagaatggtt 119 |||||||||||||||||||| Sbjct: 3783 acacggcttctagaatggtt 3802
>gb|AC101729.8| Mus musculus chromosome 1, clone RP23-362J21, complete sequence Length = 177946 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aagcagccagccatttttac 244 |||||||||||||||||||| Sbjct: 162482 aagcagccagccatttttac 162463
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ttactgctgctggtgctgtt 140 |||||||||||||||||||| Sbjct: 5590190 ttactgctgctggtgctgtt 5590171
>gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, complete sequence Length = 223742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aagtctatcaccaaaaagga 73 |||||||||||||||||||| Sbjct: 211296 aagtctatcaccaaaaagga 211315
>gb|AC148348.6| Medicago truncatula clone mth2-28b4, complete sequence Length = 118633 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 atcattgatgatgacatgcc 280 |||||||||||||||||||| Sbjct: 61095 atcattgatgatgacatgcc 61114
>emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on chromosome 6, complete sequence Length = 113362 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 agagatgagcaaattatcat 573 |||||||||||||||||||| Sbjct: 75538 agagatgagcaaattatcat 75557
>emb|AL391821.7| Human DNA sequence from clone RP11-212B22 on chromosome Xq21.2-22.2 Contains the 3' end of the DIAPH2 gene for diaphanous (Drosophila, homolog) 2 and the 5' end of a novel gene (EPAG), complete sequence Length = 158408 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 acaggcaaaagagctgttcaaaac 184 |||||||||||| ||||||||||| Sbjct: 29558 acaggcaaaagacctgttcaaaac 29581
>ref|XM_966541.1| PREDICTED: Tribolium castaneum similar to CG5502-PA (LOC660298), mRNA Length = 1369 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gatgacatgccccttgctca 289 |||||||||||||||||||| Sbjct: 504 gatgacatgccccttgctca 485
>emb|X72832.1|SEDEXB S.equisimilis dexb, abc, lrp, skc, rel genes and ORF1 Length = 8931 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 ttggatgatttggcttttgc 544 |||||||||||||||||||| Sbjct: 3306 ttggatgatttggcttttgc 3287
>emb|BX004761.10| Zebrafish DNA sequence from clone DKEY-11I10 in linkage group 20 Contains a novel gene and a CpG island, complete sequence Length = 132841 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 tgccttcaatggagcatcct 318 |||||||||||||||||||| Sbjct: 38716 tgccttcaatggagcatcct 38697
>emb|BX296553.6| Zebrafish DNA sequence from clone CH211-222G19 in linkage group 8, complete sequence Length = 108215 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tgccttcaatggagcatcct 318 |||||||||||||||||||| Sbjct: 52958 tgccttcaatggagcatcct 52977
>gb|AC022819.8| Homo sapiens chromosome 15, clone RP11-41I15, complete sequence Length = 193803 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 ctgctgctggtgctgttaagcatg 147 ||||||||| |||||||||||||| Sbjct: 42734 ctgctgctgctgctgttaagcatg 42711
>gb|AC037479.9| Homo sapiens chromosome 15, clone RP11-616M17, complete sequence Length = 177761 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 ctgctgctggtgctgttaagcatg 147 ||||||||| |||||||||||||| Sbjct: 77334 ctgctgctgctgctgttaagcatg 77357
>gb|AC010314.6| Homo sapiens chromosome 5 clone CTB-83L16, complete sequence Length = 124861 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 attcaaaatcattacacggcttct 110 ||||||||||||| |||||||||| Sbjct: 74311 attcaaaatcattccacggcttct 74334
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gagctgttcaaaacgctgcc 190 |||||||||||||||||||| Sbjct: 1290157 gagctgttcaaaacgctgcc 1290138
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ttgcttggatgatttggctt 540 |||||||||||||||||||| Sbjct: 3363400 ttgcttggatgatttggctt 3363419
>ref|XM_575971.1| PREDICTED: Rattus norvegicus similar to hypothetical protein A530045M11 (LOC500597), mRNA Length = 2769 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgttgccttcaatggagcat 315 |||||||||||||||||||| Sbjct: 2257 tgttgccttcaatggagcat 2238
>dbj|AK068475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152H07, full insert sequence Length = 4125 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ttgcttggatgatttggctt 540 |||||||||||||||||||| Sbjct: 1318 ttgcttggatgatttggctt 1337
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ttactgctgctggtgctgtt 140 |||||||||||||||||||| Sbjct: 57109 ttactgctgctggtgctgtt 57090
>gb|AC101789.9| Mus musculus chromosome 1, clone RP24-150F11, complete sequence Length = 150474 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aagcagccagccatttttac 244 |||||||||||||||||||| Sbjct: 134926 aagcagccagccatttttac 134945
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ttgcttggatgatttggctt 540 |||||||||||||||||||| Sbjct: 3363345 ttgcttggatgatttggctt 3363364
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ttgcttggatgatttggctt 540 |||||||||||||||||||| Sbjct: 42453 ttgcttggatgatttggctt 42472 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,375,556 Number of Sequences: 3902068 Number of extensions: 5375556 Number of successful extensions: 103340 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103045 Number of HSP's gapped (non-prelim): 288 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)